View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3106_low_1 (Length: 551)
Name: NF3106_low_1
Description: NF3106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3106_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 13 - 378
Target Start/End: Complemental strand, 29786501 - 29786135
Alignment:
| Q |
13 |
aatataattgtttttctgcaacgtagccttggatttttgctttgagcctacttggacttgctcccctagctgaacgtgtcagcttcctcactgagtaagt |
112 |
Q |
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| T |
29786501 |
aatataattgtttttctgcaacgtagccttggatttttgctttgagcctacttggacttgctcccctagctgaacgtgtcagcttcctcactgagtaaga |
29786402 |
T |
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| Q |
113 |
ttgcatgttacattctaattttaattttacttactatagtaatatgattatttttcaaatttcatgtgtttctaacatttgctatctaatt-ttttgtta |
211 |
Q |
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| T |
29786401 |
ttgcatgttacattctaattttaattttactcactatagtaatatgattatttttcaaatttcatgtgtttctaacatttgctatctaatttttttgtta |
29786302 |
T |
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| Q |
212 |
ctcaaaattttcacctgaactgcttgaacttgaaggcaaattgcatattcccccggcccaacaggtacggttgctctttcatctatgagactaaactagc |
311 |
Q |
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| T |
29786301 |
ctcaaaattttcacctgaactgcttgaacttgaaggcaaattgcatatttcaccggcccaacaggtacggttgctctttcatctatgagactaaactagc |
29786202 |
T |
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| Q |
312 |
atacagatatcatttcagataaatcgtgcaacatcttatatatcaacatttatttttatatattagt |
378 |
Q |
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| T |
29786201 |
atacaaatatcatttcaaataaatcgtgcaacatcttatataccaatatttatttttgtatattagt |
29786135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 445 - 530
Target Start/End: Complemental strand, 29786123 - 29786038
Alignment:
| Q |
445 |
aatgaaattaatattatctaatagtagacaattttaccttgcactgcatctggagatcctaaatattatcaatattacccttgccc |
530 |
Q |
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| T |
29786123 |
aatgaaatcaatattatctaatagtggacaattttaccttgtactccatctggagatcctaaatattatcaatcttacccttgccc |
29786038 |
T |
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