View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3106_low_10 (Length: 371)

Name: NF3106_low_10
Description: NF3106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3106_low_10
NF3106_low_10
[»] chr2 (8 HSPs)
chr2 (13-352)||(16152100-16152439)
chr2 (70-281)||(8685613-8685824)
chr2 (92-345)||(26653118-26653371)
chr2 (121-348)||(26654691-26654914)
chr2 (92-345)||(22132216-22132467)
chr2 (199-324)||(24215911-24216036)
chr2 (59-126)||(25348187-25348254)
chr2 (275-324)||(17417586-17417635)
[»] chr7 (15 HSPs)
chr7 (94-324)||(2641652-2641882)
chr7 (92-345)||(19142736-19142989)
chr7 (92-345)||(20742135-20742388)
chr7 (73-315)||(48358050-48358291)
chr7 (59-271)||(19842397-19842607)
chr7 (200-338)||(10983800-10983938)
chr7 (59-324)||(17915494-17915757)
chr7 (59-309)||(17918649-17918888)
chr7 (59-212)||(2278188-2278341)
chr7 (183-315)||(4876370-4876501)
chr7 (200-324)||(19414572-19414696)
chr7 (71-117)||(8807530-8807576)
chr7 (275-324)||(2278086-2278135)
chr7 (204-324)||(20053152-20053272)
chr7 (57-129)||(20053333-20053405)
[»] chr6 (6 HSPs)
chr6 (91-345)||(17208907-17209161)
chr6 (72-324)||(19731403-19731655)
chr6 (133-324)||(225326-225517)
chr6 (92-324)||(239829-240058)
chr6 (107-324)||(10482014-10482232)
chr6 (57-118)||(14201410-14201471)
[»] scaffold0062 (1 HSPs)
scaffold0062 (33-348)||(2484-2797)
[»] chr4 (6 HSPs)
chr4 (59-324)||(22316646-22316900)
chr4 (71-324)||(5842762-5843014)
chr4 (92-322)||(8911550-8911780)
chr4 (73-227)||(16322172-16322331)
chr4 (222-344)||(19555412-19555535)
chr4 (194-247)||(22222776-22222829)
[»] scaffold0711 (1 HSPs)
scaffold0711 (98-348)||(1595-1845)
[»] chr3 (7 HSPs)
chr3 (119-345)||(9323494-9323720)
chr3 (167-348)||(11829558-11829737)
chr3 (59-324)||(21318365-21318624)
chr3 (103-271)||(13177843-13178011)
chr3 (103-271)||(13340743-13340911)
chr3 (166-309)||(21528123-21528266)
chr3 (91-249)||(15331285-15331443)
[»] chr8 (7 HSPs)
chr8 (70-281)||(23432874-23433086)
chr8 (72-345)||(5826193-5826464)
chr8 (73-314)||(13645186-13645426)
chr8 (73-314)||(13745611-13745851)
chr8 (97-345)||(5828792-5829038)
chr8 (190-320)||(24987511-24987641)
chr8 (224-347)||(16227393-16227516)
[»] chr1 (4 HSPs)
chr1 (61-324)||(9756476-9756737)
chr1 (96-348)||(24006216-24006467)
chr1 (199-286)||(39476625-39476712)
chr1 (190-287)||(19223807-19223904)
[»] scaffold0041 (1 HSPs)
scaffold0041 (57-324)||(26368-26633)
[»] chr5 (8 HSPs)
chr5 (73-322)||(21216376-21216625)
chr5 (216-348)||(19569698-19569830)
chr5 (166-246)||(21215700-21215780)
chr5 (190-345)||(24163599-24163754)
chr5 (190-324)||(21391301-21391435)
chr5 (217-345)||(9824139-9824267)
chr5 (59-262)||(24885164-24885364)
chr5 (77-129)||(9824348-9824400)
[»] scaffold0002 (1 HSPs)
scaffold0002 (103-271)||(128977-129145)
[»] scaffold0527 (2 HSPs)
scaffold0527 (190-345)||(526-681)
scaffold0527 (190-345)||(8589-8744)
[»] scaffold0300 (2 HSPs)
scaffold0300 (190-345)||(11996-12151)
scaffold0300 (190-232)||(7381-7423)
[»] scaffold0053 (1 HSPs)
scaffold0053 (200-249)||(27860-27909)
[»] scaffold0068 (1 HSPs)
scaffold0068 (216-324)||(57018-57126)


Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 13 - 352
Target Start/End: Original strand, 16152100 - 16152439
Alignment:
Q  13 cagactcagaagatgactaccatacgtggatatgaggaacccatataatccacatatgcttttgtcttattctttgatttgtctctatcatagtatctga 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16152100 cagactcagaagatgactaccatacttggatatgaggaacccatataatccacatatgcttttgtcttattctttgatttgtctctatcatagtatctga 16152199  T
Q  113 tagagtagttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaagaacaaaaagaatgcaaaatataattcttctttcagcaaagga 212  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16152200 tagagtagttcttttgtatacttctatctatgcgtgaaaccagacataagacttcaagaacaaaaagaatgcaacatataattcttctttcagcaaagga 16152299  T
Q  213 aattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaatttatttgcgctggcactcttgtc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16152300 aattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaatttatttgcgctggcactcttgtc 16152399  T
Q  313 caacgtctctcatttcagtacctatataaggagttgcagg 352  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  16152400 caacgtctctcatttcagtacctatataaggagttgcagg 16152439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 70 - 281
Target Start/End: Complemental strand, 8685824 - 8685613
Alignment:
Q  70 gcttttgtcttattctttgatttgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaa 169  Q
    |||||||||||||| | ||| || ||||||||||||||||| |||||| |||| |||||| |  |||| ||||  |||| || |||||| | ||| ||||    
T  8685824 gcttttgtcttattatgtgagttttctctatcatagtatctaatagagaagtttttttgtcttattctgtctacatgtgcaaacagacaaaggacctcaa 8685725  T
Q  170 gaacaaaaagaatgcaaaatataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttg 269  Q
    ||||||| |||||| || | ||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||   |||||| |||| ||||||    
T  8685724 gaacaaagagaatgtaacaaataattcttcttttagcaaaggaaattcaaaggatttaccaacggaattatccatatcatgcaaagggacaactttcttg 8685625  T
Q  270 attggagcttct 281  Q
    |||| |||||||    
T  8685624 attgaagcttct 8685613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 92 - 345
Target Start/End: Original strand, 26653118 - 26653371
Alignment:
Q  92 tgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaagaacaaaaagaatgcaaaatat 191  Q
    |||||||||||| ||||| ||||||| ||||||| ||  | ||||| |||| ||||| || || ||| | ||| ||||||||||| | ||||||| | ||    
T  26653118 tgtctctatcatcgtatcagatagagcagttcttatgccttcttctgtctacgtgtgcaaacaaacaaaggacctcaagaacaaagataatgcaacaaat 26653217  T
Q  192 aattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaattt 291  Q
    |||| | ||||||  ||||||||||||||||||| | ||||||||||||||||||||| ||||||| |||| |||||||||  | ||||||||| | | |    
T  26653218 aattatactttcacgaaaggaaattcaaaggactattcaacggaattatccatatcaggaaaagggccaacgttcttgattaaatcttctcaacgactct 26653317  T
Q  292 atttgcgctggcactcttgtccaacgtctctcatttcagtacctatataaggag 345  Q
    ||||||| | | ||| || |||||||| |||||  ||| |||||||||||||||    
T  26653318 atttgcgatagaacttttctccaacgtatctcaaatcactacctatataaggag 26653371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 121 - 348
Target Start/End: Original strand, 26654691 - 26654914
Alignment:
Q  121 ttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaagaacaaaaagaatgcaaaatataattcttctttcagcaaaggaaattcaaa 220  Q
    ||||||||| | ||| ||| || ||||| || |||||| | ||| |||||||||||| |||| |||   |||||||| |||||| |||||||||||||||    
T  26654691 ttcttttgtcttcttgtatgtacgtgtgcaaacagacaaaggacctcaagaacaaaaggaatacaatggataattctactttcaacaaaggaaattcaaa 26654790  T
Q  221 ggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaatttatttgcgctggcactcttgtccaacgtct 320  Q
    ||||| | ||| ||||||    ||||||| ||||||| ||||||||||||||   ||||||||||||  ||||||| | |  |||| || ||||||||||    
T  26654791 ggactattcaatggaatt----atatcaggaaaagggccaacattcttgattaatgcttctcaacaacgttatttgtgataacacttttctccaacgtct 26654886  T
Q  321 ctcatttcagtacctatataaggagttg 348  Q
    ||||  ||| | ||||||||||||||||    
T  26654887 ctcaaatcactgcctatataaggagttg 26654914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 92 - 345
Target Start/End: Original strand, 22132216 - 22132467
Alignment:
Q  92 tgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaagaacaaaaagaatgcaaaatat 191  Q
    |||| |||||| || || |||||||| |||| |||||| | ||||| |||| ||||| || |||||| | ||| |||||||||||| |||| ||| | ||    
T  22132216 tgtccctatcaaaggatatgatagagcagtt-ttttgtcttcttctgtctacgtgtgcaaacagacaaaggacctcaagaacaaaaggaatccaatagat 22132314  T
Q  192 aattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaattt 291  Q
    ||| || |||||| |||||||||||||||||||| | |||| ||||||| |||||||   |||||  |||| |||||||||| ||||||||||| | | |    
T  22132315 aat-ctactttcaccaaaggaaattcaaaggactattcaactgaattattcatatcaagcaaaggaccaacgttcttgattgaagcttctcaacgactat 22132413  T
Q  292 atttgcgctggcactcttgtccaacgtctctcatttcagtacctatataaggag 345  Q
    ||||  |||| | ||||| |||||||||||||| || | || | ||||||||||    
T  22132414 atttaggctgactctcttctccaacgtctctcaattgactagcaatataaggag 22132467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 199 - 324
Target Start/End: Complemental strand, 24216036 - 24215911
Alignment:
Q  199 ctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaatttatttgcg 298  Q
    |||||||||| |||||||||||| |||||||||||  ||||||||||||||  |||||| || | ||  |||||| ||||||| ||| ||| ||||||||    
T  24216036 ctttcagcaacggaaattcaaagtactttccaacgagattatccatatcagtcaaagggccatcgtttgtgattgaagcttcttaacgaatctatttgcg 24215937  T
Q  299 ctggcactcttgtccaacgtctctca 324  Q
    |||| |||||| |||||| |||||||    
T  24215936 ctggaactcttctccaacatctctca 24215911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 25348254 - 25348187
Alignment:
Q  59 aatccacatatgcttttgtcttattctttgatttgtctctatcatagtatctgatagagtagttcttt 126  Q
    ||||||| || | |||||| ||||||| ||| ||||||||||||||| ||||| ||||| ||||||||    
T  25348254 aatccacgtaagattttgtgttattctgtgagttgtctctatcatagcatctggtagagaagttcttt 25348187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 324
Target Start/End: Original strand, 17417586 - 17417635
Alignment:
Q  275 agcttctcaacaaatttatttgcgctggcactcttgtccaacgtctctca 324  Q
    ||||||||||||| | | | ||||||||||||||| ||||||||||||||    
T  17417586 agcttctcaacaactctttatgcgctggcactcttctccaacgtctctca 17417635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 6e-56; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 94 - 324
Target Start/End: Original strand, 2641652 - 2641882
Alignment:
Q  94 tctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaagaacaaaaagaatgcaaaatataa 193  Q
    |||||||||||||||||||||||| ||||||||||| | ||||| | |||||||| ||||||||| | ||| ||||||||||| ||||||||| ||||||    
T  2641652 tctctatcatagtatctgatagagcagttcttttgtcttcttctgtttatgtgtgcaaccagacaaaggacatcaagaacaaagagaatgcaacatataa 2641751  T
Q  194 ttcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaatttat 293  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| |||| || |||| ||||||||   ||||||||||  | | |||    
T  2641752 ttcttctttcaacaaaggaaatttaaaggacttttcaacggaattatccatatcaggaaaaaggtcaacgttcttgatcaaagcttctcaaggactctat 2641851  T
Q  294 ttgcgctggcactcttgtccaacgtctctca 324  Q
    |||| ||  ||||||| | ||||||||||||    
T  2641852 ttgcactaacactcttcttcaacgtctctca 2641882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 92 - 345
Target Start/End: Original strand, 19142736 - 19142989
Alignment:
Q  92 tgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaagaacaaaaagaatgcaaaatat 191  Q
    |||| |||| ||||||||||||| |||||||||||||| | ||||| |||| ||||| || |||||| | ||| ||||||||||| | |||| || | ||    
T  19142736 tgtccctataatagtatctgataaagtagttcttttgtcttcttctgtctacgtgtgcaaacagacaaaggacctcaagaacaaagaaaatgaaacagat 19142835  T
Q  192 aattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaattt 291  Q
    |||||||||||||  ||||||||||||||||||||  ||| |||||||||||||||||  |||| |   ||||||||||||| ||||||||||  | | |    
T  19142836 aattcttctttcaataaaggaaattcaaaggacttctcaatggaattatccatatcaggcaaagagaagacattcttgattgaagcttctcaatgactct 19142935  T
Q  292 atttgcgctggcactcttgtccaacgtctctcatttcagtacctatataaggag 345  Q
    ||||||||| ||||| || ||||||||||||||  | | | |||||||||||||    
T  19142936 atttgcgcttgcacttttctccaacgtctctcaaatgactgcctatataaggag 19142989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 92 - 345
Target Start/End: Original strand, 20742135 - 20742388
Alignment:
Q  92 tgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaagaacaaaaagaatgcaaaatat 191  Q
    |||| |||| ||||||||||||| |||||||||||||| | ||||| |||| ||||| || |||||| | ||| ||||||||||| | |||| || | ||    
T  20742135 tgtccctataatagtatctgataaagtagttcttttgtcttcttctgtctacgtgtgcaaacagacaaaggacctcaagaacaaagaaaatgaaacagat 20742234  T
Q  192 aattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaattt 291  Q
    |||||||||||||  ||||||||||||||||||||  ||| |||||||||||||||||  |||| |   ||||||||||||| ||||||||||  | | |    
T  20742235 aattcttctttcaataaaggaaattcaaaggacttctcaatggaattatccatatcaggcaaagagaagacattcttgattgaagcttctcaatgactct 20742334  T
Q  292 atttgcgctggcactcttgtccaacgtctctcatttcagtacctatataaggag 345  Q
    ||||||||| ||||| || ||||||||||||||  | | | |||||||||||||    
T  20742335 atttgcgcttgcacttttctccaacgtctctcaaatgactgcctatataaggag 20742388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 73 - 315
Target Start/End: Original strand, 48358050 - 48358291
Alignment:
Q  73 tttgtcttattctttgatttgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaagaa 172  Q
    |||||||||||||  || || || |||||||||||| |||||||  | ||||||||| | ||||| |||| ||||| || || ||| | ||| |||| ||    
T  48358050 tttgtcttattctgggaattatccctatcatagtatgtgatagaacaattcttttgtcttcttctgtctacgtgtgcaaacatacaaaggacctcaataa 48358149  T
Q  173 caaaaagaatgcaaaatataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgatt 272  Q
    ||||| |||||||| | |||||||| ||| || |||||||||||||||||||| | |||||||||||||||||||||  |||||| |||| |||||||||    
T  48358150 caaaaggaatgcaacagataattctactt-caacaaaggaaattcaaaggactattcaacggaattatccatatcaggcaaagggccaacgttcttgatt 48358248  T
Q  273 ggagcttctcaacaaatttatttgcgctggcactcttgtccaa 315  Q
    | ||||||||||| | | ||||| | ||||||||||| |||||    
T  48358249 gaagcttctcaacgactctatttacactggcactcttctccaa 48358291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 59 - 271
Target Start/End: Original strand, 19842397 - 19842607
Alignment:
Q  59 aatccacatatgcttttgtcttattctttgatttgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagaca 158  Q
    |||||||||| |||||||| ||||||| ||| |||| |||||||||||||||||||||| ||||||||||| | ||||| |||| ||||  ||||||| |    
T  19842397 aatccacataagcttttgttttattctgtgaattgtgtctatcatagtatctgatagagcagttcttttgtcttcttctgtctacgtgtacaaccagaaa 19842496  T
Q  159 taagacttcaagaacaaaaagaatgcaaaatataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaagggg 258  Q
       ||| | | |||| ||||||  |||| || ||||| |||||||| ||||||||||||||||||| |||||||   ||||||||||||||| ||| |      
T  19842497 agggacataaggaacgaaaaga--gcaacatctaatttttctttcaacaaaggaaattcaaaggacgttccaacatgattatccatatcagacaaacgac 19842594  T
Q  259 caacattcttgat 271  Q
    |||||||||||||    
T  19842595 caacattcttgat 19842607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 200 - 338
Target Start/End: Original strand, 10983800 - 10983938
Alignment:
Q  200 tttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaatttatttgcgc 299  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||  |||||| |||||||| ||||   | ||||||||  | | |||||||||    
T  10983800 tttcagcaaaggaaattcaaagtactttccaacgggattatccatatcaggcaaagggccaacattcatgatcaaaccttctcaatgactctatttgcgc 10983899  T
Q  300 tggcactcttgtccaacgtctctcatttcagtacctata 338  Q
    || || |||| ||||||||||||||  ||| ||||||||    
T  10983900 tgacattcttctccaacgtctctcaaatcactacctata 10983938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 59 - 324
Target Start/End: Complemental strand, 17915757 - 17915494
Alignment:
Q  59 aatccacatatgcttttgtcttattctttgatttgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagaca 158  Q
    ||||||| || |||||||||||||||| |||  |||||||  ||||||||||||||||||||| ||||||| | ||||| ||||  |||  |||  ||||    
T  17915757 aatccacgtaagcttttgtcttattctgtgagctgtctctgccatagtatctgatagagtagtgcttttgtcttcttctgtctacatgtacaacacgaca 17915658  T
Q  159 taagacttcaagaacaaaaagaatgcaaaatataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaagggg 258  Q
     | ||| ||     | || |||  |||| ||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||  | |||      
T  17915657 aaggacatcggtctcgaagaga--gcaacatataattcctctttcagcaaaggaaattcaaaggactttccaatgggattatccatatcaggcagaggac 17915560  T
Q  259 caacattcttgattggagcttctcaacaaatttatttgcgctggcactcttgtccaacgtctctca 324  Q
    |||  ||||||||   ||||||||||| | |||||||||| |  ||||||| |||||  |||||||    
T  17915559 caaagttcttgatgaaagcttctcaacgattttatttgcgttttcactcttctccaatatctctca 17915494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 309
Target Start/End: Complemental strand, 17918888 - 17918649
Alignment:
Q  59 aatccacatatgcttttgtcttattctttgatttgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagaca 158  Q
    |||||||||| ||||| |||||||  | ||| ||||| ||||||||||||| ||||||| | ||||||| | | ||||| |||| ||||| || ||||||    
T  17918888 aatccacataagcttt-gtcttatcatgtgaattgtccctatcatagtatccgatagagcatttcttttatcttcttctgtctacgtgtgcaaacagaca 17918790  T
Q  159 taagacttcaagaacaaaaagaatgcaaaatataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaagggg 258  Q
     | ||| ||||||| ||  ||||||||| |||||||||||| ||||            |||||||| || |||||||||||||||||||||  ||||||     
T  17918789 aatgacctcaagaataacgagaatgcaacatataattcttccttca-----------acaaaggacatttcaacggaattatccatatcaggtaaagggc 17918701  T
Q  259 caacattcttgattggagcttctcaac-aaatttatttgcgctggcactctt 309  Q
    | || |||||||||| || |||||||| |  ||||||||||||| |||||||    
T  17918700 cgacgttcttgattgaagattctcaacgacttttatttgcgctgacactctt 17918649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 59 - 212
Target Start/End: Complemental strand, 2278341 - 2278188
Alignment:
Q  59 aatccacatatgcttttgtcttattctttgatttgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagaca 158  Q
    |||||||||| |||||||||||||| | |||  |  |||||||||||||| ||||| |  | || |||||| | ||||| |||| || || ||||| |||    
T  2278341 aatccacataagcttttgtcttattttgtgagctaactctatcatagtatatgataaatcaattattttgtcttcttctgtctacgtttgcaaccaaaca 2278242  T
Q  159 taagacttcaagaacaaaaagaatgcaaaatataattcttctttcagcaaagga 212  Q
     | ||| ||||||||||| ||||||||| | ||||||||  |||||||||||||    
T  2278241 aaggacctcaagaacaaagagaatgcaacaaataattctattttcagcaaagga 2278188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 315
Target Start/End: Complemental strand, 4876501 - 4876370
Alignment:
Q  183 gcaaaatataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctc 282  Q
    |||| ||||||||||| || | ||||||||||| ||||||||||||||||||||||||||||| |||  ||||||  |  |||||||||   ||||||||    
T  4876501 gcaacatataattcttatt-ctgcaaaggaaatccaaaggactttccaacggaattatccataccagggaaagggctagtattcttgataaaagcttctc 4876403  T
Q  283 aacaaatttatttgcgctggcactcttgtccaa 315  Q
    ||| | | |||||| | ||||||| || |||||    
T  4876402 aacgactctatttgtgatggcacttttctccaa 4876370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 200 - 324
Target Start/End: Complemental strand, 19414696 - 19414572
Alignment:
Q  200 tttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaatttatttgcgc 299  Q
    ||||| ||||||| ||||| || |||||| ||| | | |||||||||||   |||||| |||  ||| |||||| ||||||||||| | | |||||||||    
T  19414696 tttcatcaaaggagattcacagtactttctaacaggactatccatatcaagcaaagggccaaagttcgtgattgaagcttctcaacgactctatttgcgc 19414597  T
Q  300 tggcactcttgtccaacgtctctca 324  Q
    | |||||||| | ||||||||||||    
T  19414596 ttgcactcttcttcaacgtctctca 19414572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 8807576 - 8807530
Alignment:
Q  71 cttttgtcttattctttgatttgtctctatcatagtatctgatagag 117  Q
    ||||||||||||||| |||  ||||||||||||| ||||||||||||    
T  8807576 cttttgtcttattctgtgagctgtctctatcataatatctgatagag 8807530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 2278135 - 2278086
Alignment:
Q  275 agcttctcaacaaatttatttgcgctggcactcttgtccaacgtctctca 324  Q
    ||||||||||||| | ||||||| ||| ||||||| ||||||||||||||    
T  2278135 agcttctcaacaactctatttgcactgacactcttctccaacgtctctca 2278086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 324
Target Start/End: Complemental strand, 20053272 - 20053152
Alignment:
Q  204 agcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaatttatttgcgctggc 303  Q
    |||||||||||||||||||||||| ||  || ||||| ||||||||  ||| || |||| ||| ||||   ||||| ||||  | | |||||| | ||||    
T  20053272 agcaaaggaaattcaaaggacttttcattgggattattcatatcaggcaaaaggccaacgttcatgatcaaagcttgtcaatgactctatttgtgttggc 20053173  T
Q  304 actcttgtccaacgtctctca 324  Q
    |||| | ||||||||||||||    
T  20053172 actcctctccaacgtctctca 20053152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 20053405 - 20053333
Alignment:
Q  57 ataatccacatatgcttttgtcttattctttgatttgtctctatcatagtatctgatagagtagttcttttgt 129  Q
    |||||||||||| ||| || | ||||| | ||| || |||||||||||| |||||||| || |||||||||||    
T  20053405 ataatccacataagctattttattattttgtgagttatctctatcatagcatctgatatagcagttcttttgt 20053333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 6e-56; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 91 - 345
Target Start/End: Complemental strand, 17209161 - 17208907
Alignment:
Q  91 ttgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaagaacaaaaagaatgcaaaata 190  Q
    |||||| ||| ||||||||| |||||| ||||||||||| | |||||||||| || || || |||||| |  || ||||||||||  ||||||||||| |    
T  17209161 ttgtctttattatagtatctaatagagaagttcttttgtcttcttctatctacgtctgcaaacagacaaagcacctcaagaacaatgagaatgcaaaaaa 17209062  T
Q  191 taattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaatt 290  Q
    ||||| |||||||| |||||||||||| ||||||||| ||||||||||||| |||||||  |||||| |||| |||||||||| ||||||||||| | |     
T  17209061 taattattctttcaacaaaggaaattcgaaggacttttcaacggaattatctatatcaggcaaagggccaacgttcttgattgaagcttctcaacgattc 17208962  T
Q  291 tatttgcgctggcactcttgtccaacgtctctcatttcagtacctatataaggag 345  Q
    |||||| |||| ||||||| |||||||||||| |||||| | |||||||||||||    
T  17208961 tatttgtgctgacactcttctccaacgtctcttatttcactgcctatataaggag 17208907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 72 - 324
Target Start/End: Complemental strand, 19731655 - 19731403
Alignment:
Q  72 ttttgtcttattctttgatttgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaaga 171  Q
    |||||||| ||||| |||  | |||||||||||||||||||||||| |||| |||||| | ||||| |||| ||||| ||||||||| | ||| ||||||    
T  19731655 ttttgtctcattctgtgagctatctctatcatagtatctgatagagcagttattttgtcttcttctgtctacgtgtgcaaccagacaaaggacatcaaga 19731556  T
Q  172 acaaaaagaatgcaaaatataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgat 271  Q
    ||||| ||||| ||| |||||||||||||||| ||||||||||||||||| | ||| ||| ||||||||| ||||||| |||| || ||||  |||||||    
T  19731555 acaaagagaatacaacatataattcttctttccgcaaaggaaattcaaagaaattttcaaaggaattatctatatcaggaaaaaggccaacgatcttgat 19731456  T
Q  272 tggagcttctcaacaaatttatttgcgctggcactcttgtccaacgtctctca 324  Q
       ||||||||||  | | |||||| | || ||||||| | ||||||||||||    
T  19731455 caaagcttctcaatgattatatttgtgatgacactcttctacaacgtctctca 19731403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 133 - 324
Target Start/End: Complemental strand, 225517 - 225326
Alignment:
Q  133 cttctatctatgtgtgaaaccagacataagacttcaagaacaaaaagaatgcaaaatataattcttctttcagcaaaggaaattcaaaggactttccaac 232  Q
    ||||| |||| ||||| || |||||| ||||| |||||||||| | |||||||  | |||||| | |||||| || || |||||||||||||| | ||||    
T  225517 cttctttctacgtgtgcaagcagacaaaagacctcaagaacaataggaatgcattagataattgtactttcaacatagaaaattcaaaggactattcaac 225418  T
Q  233 ggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaatttatttgcgctggcactcttgtccaacgtctctca 324  Q
    |||||| | ||||||||| ||| || |||| |||||||||| ||||| ||||  | | ||||||| |||  |||||| ||||||||||||||    
T  225417 ggaattgttcatatcagacaaatggtcaacgttcttgattgaagcttttcaatgactatatttgcactgaaactcttctccaacgtctctca 225326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 324
Target Start/End: Original strand, 239829 - 240058
Alignment:
Q  92 tgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaagaacaaaaagaatgcaaaatat 191  Q
    |||| |||||| || ||||| ||||| | || |||||| | ||||| |||| ||||| ||  ||||| | ||| |||||| ||||| ||||||||   |     
T  239829 tgtccctatcaaaggatctgctagaggaatttttttgtcttcttctgtctacgtgtgcaaatagaca-aggacctcaagagcaaaaggaatgcaacgaaa 239927  T
Q  192 aattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaattt 291  Q
    |||||| |||||| |||||||| || |||||||  | |||| ||||||||||||||||  |||||| |||| |||||||||| ||||||||||| |   |    
T  239928 aattctactttcaacaaaggaacttaaaaggaccattcaaccgaattatccatatcaggcaaagggacaacgttcttgattgaagcttctcaacga--ct 240025  T
Q  292 atttgcgctggcactcttgtccaacgtctctca 324  Q
    ||||| || | ||||||| ||||||||||||||    
T  240026 atttgtgcggacactcttctccaacgtctctca 240058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 107 - 324
Target Start/End: Complemental strand, 10482232 - 10482014
Alignment:
Q  107 atctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaagaacaaaaagaatgcaaaatataattcttctttcagc 206  Q
    ||||||||||| |||| |||| | | ||||| |||| ||||| || |||||| | ||| |||||| | |||| ||||||| |||||||| | ||||| ||    
T  10482232 atctgatagagcagttattttatcttcttctgtctacgtgtgcaaacagacaaaggacctcaagaccgaaaataatgcaacatataattttactttctgc 10482133  T
Q  207 aaaggaaattcaaaggactttccaacggaattatcc-atatcagaaaaaggggcaacattcttgattggagcttctcaacaaatttatttgcgctggcac 305  Q
    |||| ||| |||||||||| | ||||| |||||||| | ||||   |||||   |||||||||||||| ||||||||||| | | ||||| || || |||    
T  10482132 aaagaaaactcaaaggactattcaacgaaattatccaaaatcaagcaaaggtctaacattcttgattgaagcttctcaacgactctatttacgttgacac 10482033  T
Q  306 tcttgtccaacgtctctca 324  Q
    || | ||||||||| ||||    
T  10482032 tcgtctccaacgtccctca 10482014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 14201471 - 14201410
Alignment:
Q  57 ataatccacatatgcttttgtcttattctttgatttgtctctatcatagtatctgatagagt 118  Q
    ||||| ||| || ||||||||| |||||| |||| |||||||||||| ||||||||||||||    
T  14201471 ataattcacgtaagcttttgtcatattctgtgatatgtctctatcatggtatctgatagagt 14201410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 33 - 348
Target Start/End: Complemental strand, 2797 - 2484
Alignment:
Q  33 catacgtggatatgaggaacccatataatccacatatgcttttgtcttattctttgatttgtctctatcatagtatctgatagagtagttcttttgtata 132  Q
    ||||| ||||||||||| |||||||  || |||||| ||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||| |     
T  2797 catacttggatatgagggacccata--attcacataagcttttgtcttatactgtgagttgtctctatcatagtatctgatagagtagttcttttgtctt 2700  T
Q  133 cttctatctatgtgtgaaaccagacataagacttcaagaacaaaaagaatgcaaaatataattcttctttcagcaaaggaaattcaaaggactttccaac 232  Q
    ||||| |||||||||| ||| ||| | | ||| ||||||||||| | |||| || | |||||||||||||||||||||||||||||||||||||||||||    
T  2699 cttctgtctatgtgtgcaacaagaaaaaggacatcaagaacaaagaaaatgtaacaaataattcttctttcagcaaaggaaattcaaaggactttccaac 2600  T
Q  233 ggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaatttatttgcgctggcactcttgtccaacgtctctcatttcagta 332  Q
      |||||  ||||| ||  || ||| || | || || ||   | ||||| ||| | | |||||| |||||||||||| ||||||||||||||  ||| |     
T  2599 ataattaatcatattaggcaatgggccatcgttttttatcaaatcttcttaacgactctatttgtgctggcactcttctccaacgtctctcaaatcactg 2500  T
Q  333 cctatataaggagttg 348  Q
    | ||||||||||||||    
T  2499 cttatataaggagttg 2484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 59 - 324
Target Start/End: Original strand, 22316646 - 22316900
Alignment:
Q  59 aatccacatatgcttttgtcttattctttgatttgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagaca 158  Q
    ||||||| || |||||||||||||||| ||| ||||||||||||||||| ||||||||| ||||||||||| | ||||||| || ||||| |||||||||    
T  22316646 aatccacgtaagcttttgtcttattctgtgagttgtctctatcatagtaactgatagagcagttcttttgtcttcttctatgtacgtgtgcaaccagaca 22316745  T
Q  159 taagacttcaagaacaaaaagaatgcaaaatataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaagggg 258  Q
     ||||| ||||||||||| ||||||||| ||||||||||||||||| |||| ||||||||           ||||| ||||||||||||| | ||||||     
T  22316746 aaagacctcaagaacaaagagaatgcaacatataattcttctttcaacaaaagaaattca-----------aacgggattatccatatcaaacaaagggt 22316834  T
Q  259 caacattcttgattggagcttctcaacaaatttatttgcgctggcactcttgtccaacgtctctca 324  Q
    | |||||||| ||   ||||||||||||| | ||||| |||| ||||| || || |||||||||||    
T  22316835 cgacattctttatcaaagcttctcaacaactctatttacgctagcacttttctctaacgtctctca 22316900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 71 - 324
Target Start/End: Original strand, 5842762 - 5843014
Alignment:
Q  71 cttttgtcttattctttgatttgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaag 170  Q
    ||||| ||||||| | ||| ||||||||||||||||||||||||||| ||||||||||| | ||| | |||| ||||| ||||| | | | ||| | |||    
T  5842762 cttttatcttattatgtgagttgtctctatcatagtatctgatagagcagttcttttgtcttcttatgtctacgtgtgcaaccaaataaaggacattaag 5842861  T
Q  171 aacaaaaagaatgcaaaatataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttga 270  Q
    |||||| ||||||||| | |||||  |||||||||||||||||||||||| |||||| ||| ||| ||||||||| |||  ||||||  ||| |||||||    
T  5842862 aacaaagagaatgcaacagataatatttctttcagcaaaggaaattcaaaagacttttcaatggatttatccataccagtcaaagggctaacgttcttga 5842961  T
Q  271 ttggagcttctcaacaaatttatttgcgctggcactcttgtccaacgtctctca 324  Q
    |   | ||| ||||| | | ||||||| || |||||||| ||||||||||||||    
T  5842962 tcaaaacttatcaacgactctatttgcact-gcactcttctccaacgtctctca 5843014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 92 - 322
Target Start/End: Complemental strand, 8911780 - 8911550
Alignment:
Q  92 tgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaagaacaaaaagaatgcaaaatat 191  Q
    |||| |||||||||||||||||| ||||||| |||| |    || | |||| |||||||| |||||| | ||| ||||||| |||| |||||||| | ||    
T  8911780 tgtccctatcatagtatctgatatagtagttattttttcgtgttttgtctacgtgtgaaaacagacaaatgacctcaagaaaaaaaggaatgcaacagat 8911681  T
Q  192 aattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaattt 291  Q
    | |||| |||||| ||||||||||| |||| ||| |  || | ||||| |||||||||| |||| | |||||| |||||||| ||||||||||| | | |    
T  8911680 atttctactttcaacaaaggaaattaaaagtactatttaatgaaattacccatatcagacaaagagccaacatccttgattgaagcttctcaacgactct 8911581  T
Q  292 atttgcgctggcactcttgtccaacgtctct 322  Q
    |||||| ||  ||||||| ||||||||||||    
T  8911580 atttgcactaacactcttctccaacgtctct 8911550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 73 - 227
Target Start/End: Original strand, 16322172 - 16322331
Alignment:
Q  73 tttgtcttattctttgatttgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagaca----taa-gacttc 167  Q
    ||||||||||||| |||  |||| ||||||||||| || ||| || ||||||||||| | ||| |  ||| ||||| || ||||||    ||| ||| ||    
T  16322172 tttgtcttattctatgaactgtccctatcatagtacctaatatagcagttcttttgttttcttttgcctacgtgtgcaaacagacaaagctaatgacctc 16322271  T
Q  168 aagaacaaaaagaatgcaaaatataattcttctttcagcaaaggaaattcaaaggacttt 227  Q
    ||||||||| ||||||||| | ||||||||||||||| ||||||||||||||| ||||||    
T  16322272 aagaacaaagagaatgcaacagataattcttctttcaacaaaggaaattcaaaagacttt 16322331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 344
Target Start/End: Original strand, 19555412 - 19555535
Alignment:
Q  222 gactttccaacggaattatccatatcagaaaaaggggcaacattcttgattgga-gcttctcaacaaatttatttgcgctggcactcttgtccaacgtct 320  Q
    |||| ||||||||||||||||||||  || || ||  |||| | ||||||| || |||||||||| ||| | | |||| || ||||||| ||||||||||    
T  19555412 gactatccaacggaattatccatatacgacaatggctcaacgtccttgatttgaagcttctcaacgaatctttatgcgatgacactcttctccaacgtct 19555511  T
Q  321 ctcatttcagtacctatataagga 344  Q
    ||||  ||| | ||||||||||||    
T  19555512 ctcaaatcaatgcctatataagga 19555535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 22222776 - 22222829
Alignment:
Q  194 ttcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatc 247  Q
    ||||| |||||||||||||  ||| || |||| |||||||||||||||||||||    
T  22222776 ttcttgtttcagcaaaggattttcgaatgactatccaacggaattatccatatc 22222829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 98 - 348
Target Start/End: Original strand, 1595 - 1845
Alignment:
Q  98 tatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaagaacaaaaagaatgcaaaatataattct 197  Q
    |||||||||||||||||||||||||  ||||| | ||| | |||| ||||| || || ||| |  || ||||||||||| |||||||||   ||||||||    
T  1595 tatcatagtatctgatagagtagtttgtttgtcttcttttgtctacgtgtgcaaacaaacaaagaacctcaagaacaaagagaatgcaacggataattct 1694  T
Q  198 tctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaatttatttgc 297  Q
    |||||||||||| ||||||||||| ||||| |||||||| |||| |||||| | |||||| |||| |||||||||| ||||||||||||| | ||||| |    
T  1695 tctttcagcaaaagaaattcaaagaacttttcaacggaaatatctatatcatacaaagggccaacgttcttgattgaagcttctcaacaactctatttac 1794  T
Q  298 gctggcactcttgtccaacgtctctcatttcagtacctatataaggagttg 348  Q
     ||| ||||||| ||||||||||||||  | | | ||||||||||||||||    
T  1795 actgacactcttctccaacgtctctcaaatgactgcctatataaggagttg 1845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 119 - 345
Target Start/End: Complemental strand, 9323720 - 9323494
Alignment:
Q  119 agttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaagaacaaaaagaatgcaaaatataattcttctttcagcaaaggaaattca 218  Q
    |||| |||||| | ||||| |||| ||||| || || ||| | ||| ||||||||||| ||||||||| | ||||| |||||||||||||| ||||||||    
T  9323720 agtttttttgtcttcttctgtctacgtgtgcaaacaaacaaatgacctcaagaacaaagagaatgcaatagataatccttctttcagcaaaagaaattca 9323621  T
Q  219 aaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaatttatttgcgctggcactcttgtccaacgt 318  Q
    ||  ||||| |||||||||||||||||||||  |||| | |||  |||||||||| ||||||||||| | | |||||||| |||||||||| ||||| ||    
T  9323620 aaatacttttcaacggaattatccatatcaggcaaagcgccaatgttcttgattgaagcttctcaacgactctatttgcgttggcactcttctccaatgt 9323521  T
Q  319 ctctcatttcagtacctatataaggag 345  Q
    ||||||||||| |||||||||||||||    
T  9323520 ctctcatttcactacctatataaggag 9323494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 167 - 348
Target Start/End: Original strand, 11829558 - 11829737
Alignment:
Q  167 caagaacaaaaagaatgcaaaatataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattc 266  Q
    |||||||||| ||||||||| | ||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||| ||  |||||| ||||||||    
T  11829558 caagaacaaagagaatgcaacagataattcttctttcagcgaaggaaatttaaaggacttttcaacggaattatccatataaggcaaagggccaacattc 11829657  T
Q  267 ttgattggagcttctcaacaaatttatttgcgctggcactcttgtccaacgtctctcatttcagtacctatataaggagttg 348  Q
    ||||||| | ||||||||| |   |||||| ||||| |||||| ||||||||||||||||||| | |||||||||| |||||    
T  11829658 ttgattgaaacttctcaacga--ctatttgtgctggaactcttctccaacgtctctcatttcattgcctatataagtagttg 11829737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 59 - 324
Target Start/End: Complemental strand, 21318624 - 21318365
Alignment:
Q  59 aatccacatatgcttttgtcttattctttgatttgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagaca 158  Q
    ||||||| || |||||||||||||||| ||| || |||||||||||||||||||||||||||| ||||||| | ||||| |||| ||||| |||||||||    
T  21318624 aatccacgtaagcttttgtcttattctgtgagttatctctatcatagtatctgatagagtagtgcttttgtcttcttctgtctacgtgtgcaaccagaca 21318525  T
Q  159 taagacttcaagaacaaaaagaatgcaaaatataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaagggg 258  Q
     |||  || | |||| || |||  |||| | |||   |||  |||||||||||||||||||||||||||||||| ||||||| ||||||||  ||||||     
T  21318524 aaagcatt-aggaacgaagaga--gcaacaaata---ctttgttcagcaaaggaaattcaaaggactttccaacagaattatacatatcaggcaaagggc 21318431  T
Q  259 caacattcttgattggagcttctcaacaaatttatttgcgctggcactcttgtccaacgtctctca 324  Q
    |||  ||||||||   ||||||||||| | | ||||||||| | ||||||| ||||| ||||||||    
T  21318430 caatgttcttgatcaaagcttctcaacgactatatttgcgccgacactcttctccaaagtctctca 21318365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 103 - 271
Target Start/End: Original strand, 13177843 - 13178011
Alignment:
Q  103 tagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaagaacaaaaagaatgcaaaatataattcttcttt 202  Q
    |||||| |||||||| ||||||||||| | ||||| |||| ||||| ||| ||||| | ||| ||||||||||| ||||| ||| | ||||||| |||||    
T  13177843 tagtatttgatagaggagttcttttgtcttcttctgtctacgtgtgcaactagacaaatgacctcaagaacaaagagaatacaacacataattcatcttt 13177942  T
Q  203 cagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgat 271  Q
    ||| ||||||||||||||||| |||||||||||||||||||||||||  |||| | |||| ||||||||    
T  13177943 caggaaaggaaattcaaaggattttccaacggaattatccatatcaggcaaagagtcaactttcttgat 13178011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 103 - 271
Target Start/End: Original strand, 13340743 - 13340911
Alignment:
Q  103 tagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaagaacaaaaagaatgcaaaatataattcttcttt 202  Q
    ||||||||||||||| ||||||||||| | ||||| |||| ||||| ||| ||||| | ||| | ||||||||| ||||| ||| |  |||||| |||||    
T  13340743 tagtatctgatagaggagttcttttgtcttcttctgtctacgtgtgcaactagacaaaggaccttaagaacaaagagaatacaacacgtaattcatcttt 13340842  T
Q  203 cagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgat 271  Q
    |||||||||||||||||| || |||||||||||||||||||||||||  |||| | |||| ||||||||    
T  13340843 cagcaaaggaaattcaaaagattttccaacggaattatccatatcaggcaaagagtcaactttcttgat 13340911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 166 - 309
Target Start/End: Original strand, 21528123 - 21528266
Alignment:
Q  166 tcaagaacaaaaagaatgcaaaatataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacatt 265  Q
    |||||||||||| ||||||||   |||||| | |||||| |||||||||||||||| ||| | |||| ||||||||||||||||  |||||| | || ||    
T  21528123 tcaagaacaaaaggaatgcaatggataattatactttcaacaaaggaaattcaaagaactattcaacagaattatccatatcaggcaaagggtcgacgtt 21528222  T
Q  266 cttgattggagcttctcaacaaatttatttgcgctggcactctt 309  Q
    |||||||| || |||||||| | | ||||||||||| |||||||    
T  21528223 cttgattgaagattctcaacgactctatttgcgctgacactctt 21528266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 91 - 249
Target Start/End: Original strand, 15331285 - 15331443
Alignment:
Q  91 ttgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaagaacaaaaagaatgcaaaata 190  Q
    ||||| ||||||| ||||||||||||| |||| |||| | | ||| | ||||  |||| || || ||| | ||| ||||||||||| ||||| ||| | |    
T  15331285 ttgtccctatcattgtatctgatagagcagttattttctcttcttttgtctacatgtgcaaacaaacaaaggacctcaagaacaaagagaatacaacaaa 15331384  T
Q  191 taattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcag 249  Q
    ||||||  |||||||||||||||||| |||||||| | |||||||||||||||||||||    
T  15331385 taattccactttcagcaaaggaaatttaaaggactattcaacggaattatccatatcag 15331443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 70 - 281
Target Start/End: Original strand, 23432874 - 23433086
Alignment:
Q  70 gcttttgtcttattctttgatttgtctctatcatagtatctgatagagtagttctttt-gtatacttctatctatgtgtgaaaccagacataagacttca 168  Q
    |||||||||||||||| ||| ||| ||||||||||||||||||||||| |||| |||| || |  |||| ||||  |||||||  ||||| | ||| |||    
T  23432874 gcttttgtcttattctgtgagttgcctctatcatagtatctgatagagcagttttttttgtctttttctgtctacatgtgaaaatagacaaaggacctca 23432973  T
Q  169 agaacaaaaagaatgcaaaatataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattctt 268  Q
    |||||||| ||||||||| | ||| ||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||  |||||| |||| |||||    
T  23432974 agaacaaagagaatgcaacagatagttcttcttttagcaaaggaaattcaaaggatcttccaacggaattatccatatcaggcaaagggacaacgttctt 23433073  T
Q  269 gattggagcttct 281  Q
    ||||| |||||||    
T  23433074 gattgaagcttct 23433086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 72 - 345
Target Start/End: Complemental strand, 5826464 - 5826193
Alignment:
Q  72 ttttgtcttattctttgatttgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaaga 171  Q
    |||||||||||| | ||| ||||  |||||||| |||||||||||| | | ||||||| |  ||||||||| ||||| ||||||||| | ||| ||||||    
T  5826464 ttttgtcttattatgtgagttgttactatcataatatctgatagagcaatgcttttgtctttttctatctacgtgtgcaaccagacaaaggacatcaaga 5826365  T
Q  172 acaaaaagaatgcaaaatataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgat 271  Q
    || || ||||  |||   ||||||||||||||||||||| |||||||||||||||||||||   ||||||||||||||  |||||| |||| ||||||||    
T  5826364 acgaagagaa--caacggataattcttctttcagcaaagaaaattcaaaggactttccaacacgattatccatatcaggcaaagggccaactttcttgat 5826267  T
Q  272 tggagcttctcaacaaatttatttgcgctggcactcttgtccaacgtctctcatttcagtacctatataaggag 345  Q
       ||||||||||| | ||||||||||||| |||| || ||| ||||||||||  ||| | |||||| ||||||    
T  5826266 caaagcttctcaacgactttatttgcgctgacacttttctcccacgtctctcaaatcactgcctataaaaggag 5826193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 73 - 314
Target Start/End: Complemental strand, 13645426 - 13645186
Alignment:
Q  73 tttgtcttattctttgatttgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaagaa 172  Q
    |||||||| |||| ||| || || |||||||||||||||||||||||||| |||||| | ||||| || | ||||| || |||||| |  || |||||||    
T  13645426 tttgtcttcttctgtgaattctccctatcatagtatctgatagagtagtt-ttttgtcttcttctgtccacgtgtgcaaacagacaaagaacctcaagaa 13645328  T
Q  173 caaaaagaatgcaaaatataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgatt 272  Q
    ||||| |||||||| | |||||||| |||||| ||||||||||||||| || | | ||||| |||||||||||||||  |||||| ||||||||||||||    
T  13645327 caaaaggaatgcaacagataattctactttcaacaaaggaaattcaaacgattattcaacgaaattatccatatcaggcaaagggccaacattcttgatt 13645228  T
Q  273 ggagcttctcaacaaatttatttgcgctggcactcttgtcca 314  Q
    | ||||||||||| | | ||||| | ||| ||||||| ||||    
T  13645227 gaagcttctcaacgactctatttactctgacactcttctcca 13645186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 73 - 314
Target Start/End: Complemental strand, 13745851 - 13745611
Alignment:
Q  73 tttgtcttattctttgatttgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaagaa 172  Q
    |||||||| |||| ||| || || |||||||||||||||||||||||||| |||||| | ||||| || | ||||| || |||||| |  || |||||||    
T  13745851 tttgtcttcttctgtgaattctccctatcatagtatctgatagagtagtt-ttttgtcttcttctgtccacgtgtgcaaacagacaaagaacctcaagaa 13745753  T
Q  173 caaaaagaatgcaaaatataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgatt 272  Q
    ||||| |||||||| | |||||||| |||||| ||||||||||||||| || | | ||||| |||||||||||||||  |||||| ||||||||||||||    
T  13745752 caaaaggaatgcaacagataattctactttcaacaaaggaaattcaaacgattattcaacgaaattatccatatcaggcaaagggccaacattcttgatt 13745653  T
Q  273 ggagcttctcaacaaatttatttgcgctggcactcttgtcca 314  Q
    | ||||||||||| | | ||||| | ||| ||||||| ||||    
T  13745652 gaagcttctcaacgactctatttactctgacactcttctcca 13745611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 97 - 345
Target Start/End: Complemental strand, 5829038 - 5828792
Alignment:
Q  97 ctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaagaacaaaaagaatgcaaaatataattc 196  Q
    |||||||| |||||||||||| | | ||||||| |  ||||||||| ||||| ||||||||| | ||| |||||||| || ||||  |||   |||||||    
T  5829038 ctatcataatatctgatagagcaatgcttttgtctttttctatctacgtgtgcaaccagacaaaggacatcaagaacgaagagaa--caacggataattc 5828941  T
Q  197 ttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaatttatttg 296  Q
    |||||||||||||| |||||||||||||||||||||   ||||||||||||||  |||||| |||| ||||||||   ||||||||||| | ||||||||    
T  5828940 ttctttcagcaaagaaaattcaaaggactttccaacacgattatccatatcaggcaaagggccaactttcttgatcaaagcttctcaacgactttatttg 5828841  T
Q  297 cgctggcactcttgtccaacgtctctcatttcagtacctatataaggag 345  Q
    ||||| |||| || ||| ||||||||||  ||| | |||||| ||||||    
T  5828840 cgctgacacttttctcccacgtctctcaaatcactgcctataaaaggag 5828792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 190 - 320
Target Start/End: Original strand, 24987511 - 24987641
Alignment:
Q  190 ataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaat 289  Q
    |||||| |||||||  | || |||||||||||||||||||||||||||||||||||||||  |||||| |||| |||||||    ||||||||||| | |    
T  24987511 ataattattctttcttccaatgaaattcaaaggactttccaacggaattatccatatcaggcaaagggccaacgttcttgaccaaagcttctcaacgact 24987610  T
Q  290 ttatttgcgctggcactcttgtccaacgtct 320  Q
     |||| ||| || ||||||| ||||||||||    
T  24987611 ctattagcgttgacactcttctccaacgtct 24987641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 224 - 347
Target Start/End: Complemental strand, 16227516 - 16227393
Alignment:
Q  224 ctttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaatttatttgcgctggcactcttgtccaacgtctctc 323  Q
    ||||||||||| ||||||||||||||  |||||| |||| ||| || ||| ||||||| ||| | | |||||||| |||||||||| ||||  |||||||    
T  16227516 ctttccaacgggattatccatatcaggcaaagggccaacgttcgtggttgaagcttcttaacgactctatttgcgttggcactcttatccactgtctctc 16227417  T
Q  324 atttcagtacctatataaggagtt 347  Q
    |   || |||||||||||||||||    
T  16227416 aaaacactacctatataaggagtt 16227393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 61 - 324
Target Start/End: Original strand, 9756476 - 9756737
Alignment:
Q  61 tccacatatgcttttgtcttattctttgatttgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagacata 160  Q
    ||||| || |||||||||||||||| ||| |||||||||| |||||||||||||||| |||| |||||| |  |||| |||||||||  || ||||||      
T  9756476 tccacgtaagcttttgtcttattctgtgagttgtctctataatagtatctgatagagaagttattttgtctttttctgtctatgtgtacaaacagacaac 9756575  T
Q  161 agacttcaagaacaaaaagaatgcaaaatataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggca 260  Q
     ||| ||||||||||   ||| |||| | ||| |||| |||||||||| ||||||||||||||||||||||| ||| ||||||||||||  || ||| ||    
T  9756576 ggacatcaagaacaag--gaaagcaacagatacttctactttcagcaatggaaattcaaaggactttccaacagaagtatccatatcaggcaatgggcca 9756673  T
Q  261 acattcttgattggagcttctcaacaaatttatttgcgctggcactcttgtccaacgtctctca 324  Q
    || ||||||||   || |||||||| | | ||||||||||||||||||| ||||||||||||||    
T  9756674 acgttcttgatcaaagattctcaacgactctatttgcgctggcactcttctccaacgtctctca 9756737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 96 - 348
Target Start/End: Original strand, 24006216 - 24006467
Alignment:
Q  96 tctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaagaacaaaaagaatgcaaaatataatt 195  Q
    |||||||||||||||||||||| |||| |||||| | ||| | |||| ||||  ||  ||||| | ||| |||||||||||| | |||||| | ||||||    
T  24006216 tctatcatagtatctgatagagcagttattttgtcttcttatgtctacgtgtcgaaaaagacaaaggacctcaagaacaaaagggatgcaacagataatt 24006315  T
Q  196 cttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaatttattt 295  Q
    || |||||| |||||||||||||||||||||| ||||  |||||| | || ||   |||||| |||  ||||| |||| ||||||||||| | | || ||    
T  24006316 ctactttcaacaaaggaaattcaaaggacttttcaacataattatacgtagcatgcaaagggccaa-tttcttaattgaagcttctcaacgactctaatt 24006414  T
Q  296 gcgctggcactcttgtccaacgtctctcatttcagtacctatataaggagttg 348  Q
    || ||| ||||||| ||||||||||||||  ||  |||||||||| |||||||    
T  24006415 gcactgacactcttctccaacgtctctcaaatccctacctatatacggagttg 24006467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 39476712 - 39476625
Alignment:
Q  199 ctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaaca 286  Q
    ||||||||||| || |||||||| ||||| |||| |||||||| |||||||| ||| || |||| ||| |||||| ||||||||||||    
T  39476712 ctttcagcaaaagagattcaaagtacttttcaacagaattatctatatcagacaaatggccaacgttcatgattgaagcttctcaaca 39476625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 287
Target Start/End: Original strand, 19223807 - 19223904
Alignment:
Q  190 ataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaa 287  Q
    ||||||| ||||| ||||||||||| ||||||  ||||||||||||||||||||| | |   |||||| |||||||  |||||| ||||||| |||||    
T  19223807 ataattcctctttgagcaaaggaaaatcaaagtgctttccaacggaattatccatgtaatccaaagggccaacatttgtgattgaagcttctaaacaa 19223904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 57 - 324
Target Start/End: Complemental strand, 26633 - 26368
Alignment:
Q  57 ataatccacatatgcttttgtcttattctttgatttgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccaga 156  Q
    ||||||||||||| |||| |||||||||| ||| || || ||||| |||||| | |||||| |||| |||||| | |||||||||| ||||| || ||||    
T  26633 ataatccacatatacttt-gtcttattctgtgaattatccctatcgtagtatgttatagagcagttattttgtcttcttctatctacgtgtgcaaacaga 26535  T
Q  157 cataagacttcaagaacaaaaagaatgcaaaatataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaagg 256  Q
    || |  || |||||||||||| |||||||| | |||||||| ||| || |||||||||||||||||||| | |||  ||||||||||||||||  |||||    
T  26534 caaagtacctcaagaacaaaatgaatgcaacagataattctactt-caacaaaggaaattcaaaggactattcaatagaattatccatatcaggcaaagg 26436  T
Q  257 ggcaacattcttgattggagcttctcaacaaatttatttgcgctggcactcttgtccaacgtctctca 324  Q
    | |||| |||||||||| ||||||| ||| | | ||||| | || |||||||| ||||||| ||||||    
T  26435 gccaacgttcttgattgaagcttctgaacgactctatttacactagcactcttctccaacgcctctca 26368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 73 - 322
Target Start/End: Original strand, 21216376 - 21216625
Alignment:
Q  73 tttgtcttattctttgatttgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaagaa 172  Q
    ||||||||||| | | | |||| ||| |||||||||||||||||  |||| |||||| | ||||| |||||||||| || |||||| | ||| |||||||    
T  21216376 tttgtcttattttataagttgtatctgtcatagtatctgatagatcagttattttgtcttcttctgtctatgtgtgcaaacagacaaaggacctcaagaa 21216475  T
Q  173 caaaaagaatgcaaaatataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgatt 272  Q
    |||| | ||||||| | ||||||||| || || |||| ||||||||||||||||| |||||||||||| ||||||||  |||||| ||   |||||||||    
T  21216476 caaagaaaatgcaacaaataattctttttccaccaaatgaaattcaaaggacttttcaacggaattattcatatcaggcaaagggccagtgttcttgatt 21216575  T
Q  273 ggagcttctcaacaaatttatttgcgctggcactcttgtccaacgtctct 322  Q
    | ||||||| ||| | | |||||| ||||| || ||| ||||||||||||    
T  21216576 gaagcttcttaacgactctatttgtgctggaacgcttatccaacgtctct 21216625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 216 - 348
Target Start/End: Original strand, 19569698 - 19569830
Alignment:
Q  216 tcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaatttatttgcgctggcactcttgtccaa 315  Q
    |||||||||||||||||| |||||||||||||    |||||| ||||||| |||||   ||||||||||||| | ||||| | ||| ||||||| | |||    
T  19569698 tcaaaggactttccaacgaaattatccatatctagcaaagggccaacattattgatcaaagcttctcaacaactctattttcactgacactcttcttcaa 19569797  T
Q  316 cgtctctcatttcagtacctatataaggagttg 348  Q
    |||||||||  ||| |||||||||||| |||||    
T  19569798 cgtctctcaaatcactacctatataagaagttg 19569830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 21215700 - 21215780
Alignment:
Q  166 tcaagaacaaaaagaatgcaaaatataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatat 246  Q
    ||||||||||| ||||||||| | ||||||||||||||| |||| |||||| |||||||||| ||| ||||||||||||||    
T  21215700 tcaagaacaaagagaatgcaacagataattcttctttcaacaaacgaaattgaaaggacttttcaaaggaattatccatat 21215780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 190 - 345
Target Start/End: Complemental strand, 24163754 - 24163599
Alignment:
Q  190 ataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaat 289  Q
    |||||||  |||||||||||||| |||||||| |||||||||||| |||||||| |||||  ||| || |||  ||| |||||| | ||||||||| | |    
T  24163754 ataattcccctttcagcaaaggagattcaaagtactttccaacgggattatccaaatcaggcaaatggtcaatgttcgtgattgaatcttctcaacgact 24163655  T
Q  290 ttatttgcgctggcactcttgtccaacgtctctcatttcagtacctatataaggag 345  Q
     |||||| | || |||| || ||||||||||||||  |||   |||||||||||||    
T  24163654 ctatttgtgatgacacttttctccaacgtctctcaaatcaacgcctatataaggag 24163599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 324
Target Start/End: Original strand, 21391301 - 21391435
Alignment:
Q  190 ataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaat 289  Q
    |||||||  |||||| |||||||||||||||| ||||||||| || ||||||| ||||||  |||| | |||||||| ||||   || |||| ||| | |    
T  21391301 ataattcccctttcaacaaaggaaattcaaagtactttccaatgggattatccgtatcaggcaaagagccaacattcgtgatcaaagattcttaacgact 21391400  T
Q  290 ttatttgcgctggcactcttgtccaacgtctctca 324  Q
     ||||| || |||||||||| ||||||||||||||    
T  21391401 ctatttacgttggcactcttctccaacgtctctca 21391435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 217 - 345
Target Start/End: Complemental strand, 9824267 - 9824139
Alignment:
Q  217 caaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaatttatttgcgctggcactcttgtccaac 316  Q
    ||||||||| | ||||  ||||||||||||||   ||| ||  ||| || ||||||| ||||||||||| | | ||||||||||||||||||| | ||||    
T  9824267 caaaggactattcaacataattatccatatcatgcaaatggtgaacgttattgattgaagcttctcaacgactctatttgcgctggcactcttcttcaac 9824168  T
Q  317 gtctctcatttcagtacctatataaggag 345  Q
     |||||||  ||  |||||||||||||||    
T  9824167 atctctcaaatccctacctatataaggag 9824139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 262
Target Start/End: Original strand, 24885164 - 24885364
Alignment:
Q  59 aatccacatatgcttttgtcttattctttgatttgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagaca 158  Q
    |||||||||| |||||||||||||| | ||| || | |||||||||| ||||  ||||| ||||||||||| | ||| | | |||||||  |||| ||||    
T  24885164 aatccacataagcttttgtcttattatgtgagttttttctatcatagcatctagtagagcagttcttttgtcttcttttgtttatgtgtacaaccggaca 24885263  T
Q  159 taagacttcaagaacaaaaagaatgcaaaatataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaagggg 258  Q
     | ||| | | |||| | |  || | || | |||||||| |||||||||||  |||||||||| |||||| |  ||| ||||||||||||| |||||||     
T  24885264 aaggacattaggaacgaga--aaagaaacagataattctcctttcagcaaa-aaaattcaaagtactttctagtggatttatccatatcaggaaaaggga 24885360  T
Q  259 caac 262  Q
    ||||    
T  24885361 caac 24885364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 9824400 - 9824348
Alignment:
Q  77 tcttattctttgatttgtctctatcatagtatctgatagagtagttcttttgt 129  Q
    ||||||| | ||| ||||| ||||| ||||||||||||||| |||||||||||    
T  9824400 tcttattatgtgaattgtccctatcttagtatctgatagagcagttcttttgt 9824348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 103 - 271
Target Start/End: Complemental strand, 129145 - 128977
Alignment:
Q  103 tagtatctgatagagtagttcttttgtatacttctatctatgtgtgaaaccagacataagacttcaagaacaaaaagaatgcaaaatataattcttcttt 202  Q
    |||||| |||||||| ||||||||||| | ||||| |||| ||||| ||| ||||| | ||| ||||||||||| ||||| ||| | ||||||| |||||    
T  129145 tagtatttgatagaggagttcttttgtcttcttctgtctacgtgtgcaactagacaaatgacctcaagaacaaagagaatacaacacataattcatcttt 129046  T
Q  203 cagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgat 271  Q
    ||| ||||||||||||||||| |||||||||||||||||||||||||  |||| | |||| ||||||||    
T  129045 caggaaaggaaattcaaaggattttccaacggaattatccatatcaggcaaagagtcaactttcttgat 128977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 190 - 345
Target Start/End: Original strand, 526 - 681
Alignment:
Q  190 ataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaat 289  Q
    |||||||  |||| ||||||||| |||||||| |||||||||| | ||||||||||||||  |||||| |||| ||  |||||| ||||||| ||| | |    
T  526 ataattccccttttagcaaaggagattcaaagtactttccaacaggattatccatatcaggcaaagggccaacgtttgtgattgaagcttcttaacgact 625  T
Q  290 ttatttgcgctggcactcttgtccaacgtctctcatttcagtacctatataaggag 345  Q
     |||||| ||||  |||||| ||||||| || |||  ||| |||||||| ||||||    
T  626 ctatttgggctgaaactcttctccaacgactttcaaatcactacctataaaaggag 681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 190 - 345
Target Start/End: Original strand, 8589 - 8744
Alignment:
Q  190 ataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaat 289  Q
    |||||||  |||| ||||||||| |||||||| |||||||||| | ||||||||||||||  |||||| |||| ||  |||||| ||||||| ||| | |    
T  8589 ataattccccttttagcaaaggagattcaaagtactttccaacaggattatccatatcaggcaaagggccaacgtttgtgattgaagcttcttaacgact 8688  T
Q  290 ttatttgcgctggcactcttgtccaacgtctctcatttcagtacctatataaggag 345  Q
     |||||| ||||  |||||| ||||||| || |||  ||| |||||||| ||||||    
T  8689 ctatttgggctgaaactcttctccaacgactttcaaatcactacctataaaaggag 8744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 345
Target Start/End: Complemental strand, 12151 - 11996
Alignment:
Q  190 ataattcttctttcagcaaaggaaattcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaat 289  Q
    ||||||||  ||| ||||| || ||||  ||||| ||||||| |||| ||||| ||||||  ||||||  ||||||| ||||   |||||||| || | |    
T  12151 ataattctatttttagcaatgggaatttgaaggaatttccaagggaactatccgtatcaggcaaagggctaacattcgtgatcaaagcttctccacgact 12052  T
Q  290 ttatttgcgctggcactcttgtccaacgtctctcatttcagtacctatataaggag 345  Q
     ||||| | ||| ||||||| ||||||||||||||  ||| |||||||| ||||||    
T  12051 ctatttacactgacactcttctccaacgtctctcaaatcactacctataaaaggag 11996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 7423 - 7381
Alignment:
Q  190 ataattcttctttcagcaaaggaaattcaaaggactttccaac 232  Q
    |||||||| |||||| ||| |||||||||||||||||||||||    
T  7423 ataattctactttcaacaatggaaattcaaaggactttccaac 7381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 27909 - 27860
Alignment:
Q  200 tttcagcaaaggaaattcaaaggactttccaacggaattatccatatcag 249  Q
    |||||||||||||  |||||| |||| |||||| ||||||||||||||||    
T  27909 tttcagcaaaggattttcaaatgactatccaacagaattatccatatcag 27860  T

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Target: scaffold0068 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 324
Target Start/End: Original strand, 57018 - 57126
Alignment:
Q  216 tcaaaggactttccaacggaattatccatatcagaaaaaggggcaacattcttgattggagcttctcaacaaatttatttgcgctggcactcttgtccaa 315  Q
    |||||| ||||| |||||| ||||||||||||||  |||||| ||| |||| |||| | | |||| |||| | | |||||  |||| ||||||| |||||    
T  57018 tcaaagtacttttcaacgggattatccatatcaggcaaagggtcaatattcgtgatcgaaacttcccaacgactctatttttgctgacactcttctccaa 57117  T
Q  316 cgtctctca 324  Q
     ||||||||    
T  57118 tgtctctca 57126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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