View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3106_low_11 (Length: 367)
Name: NF3106_low_11
Description: NF3106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3106_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 88 - 360
Target Start/End: Original strand, 45729173 - 45729445
Alignment:
| Q |
88 |
tgaagagattccttctcgtagtaaattgtctcatattatccctaggtacctgcagtgctcccctcataatgcgtctctatttcatccacggcggccaacg |
187 |
Q |
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| T |
45729173 |
tgaagagattccttctcgtagtaaattgtctcatattatccctaggtacctgcagtgctcccctcataatgcgtctctatttcatccacggcggccaacg |
45729272 |
T |
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| Q |
188 |
tgtctggctctccgccttcctccaaaccgccggtttccccttgatgctcattcccctcgcaatctcatacatcaaacgccaccgtctccacccccatcct |
287 |
Q |
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| T |
45729273 |
tgtctggctctccgccttcctccaaaccgccggtttccccttgatgctcattcccctcgcaatctcatacatcaaacgccaccgtctccaccaccatcct |
45729372 |
T |
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| Q |
288 |
ccaccatcgacaaccatctccatcgccccagaaaaactaaatataatctccatgaaacctcctattttcttcg |
360 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45729373 |
ccaccattgacaaccatctccatcgccccagaaaaactaaatataatctccatgaaacctcctattttcttcg |
45729445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 95 - 358
Target Start/End: Original strand, 45724991 - 45725254
Alignment:
| Q |
95 |
attccttctcgtagtaaattgtctcatattatccctaggtacctgcagtgctcccctcataatgcgtctctatttcatccacggcggccaacgtgtctgg |
194 |
Q |
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||||||||| ||||||||||||| |||||| ||||||||| || | ||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45724991 |
attccttctgatagtaaattgtctgatattagccctaggtaactccggtggtcccctaataatgcgtctctatttcatccacggcggccaacgtgtctgg |
45725090 |
T |
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| Q |
195 |
ctctccgccttcctccaaaccgccggtttccccttgatgctcattcccctcgcaatctcatacatcaaacgccaccgtctccacccccatcctccaccat |
294 |
Q |
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| T |
45725091 |
ctctccgcctgcctggaaactgccggtttccccttgatgctcattcccctcacaatctcatacatccaacgtttccgtcaccgccacaaacctttaccat |
45725190 |
T |
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| Q |
295 |
cgacaaccatctccatcgccccagaaaaactaaatataatctccatgaaacctcctattttctt |
358 |
Q |
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| | ||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
45725191 |
ccaacaccatctccatcgcctcagaaaaacaaaatataatctccatgaaaccacctattttctt |
45725254 |
T |
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