View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3106_low_12 (Length: 334)
Name: NF3106_low_12
Description: NF3106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3106_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 135 - 318
Target Start/End: Complemental strand, 46871110 - 46870925
Alignment:
| Q |
135 |
gaaggatatttctgaagtatacaaatg--aaatatataattttacctcgtatctttacagtatatgttaaaccttcgtagnnnnnnntctttatagtata |
232 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
46871110 |
gaaggatatttctgaagtatacacatgtgaaatatataactttacctcgtatctttacagtatatgttaaaccttcgtagaaaaaaatctttatagtata |
46871011 |
T |
|
| Q |
233 |
tgttaagtaagacaaacattaaaatcttaggttattttgttttgttctacttctattctttttctaaagccaattataatctatct |
318 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46871010 |
tgttaagtaaggcaaacattaaaatcttaggttattttgttttgttctacttctattctttttctaaagccaattataatctatct |
46870925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 46871236 - 46871140
Alignment:
| Q |
4 |
tcaaataatggagggaacttaggtgggnnnnnnntaccacaaattttttcttcataaaagaaaagaatagattttgaatgaagtaaaatgaaatcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46871236 |
tcaaataatggagggaacttaggtgggaaaaaaataccacaaattttttcttcataaaagaaaagaatagattttgaatgaagtaaaatgaaatcaa |
46871140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University