View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3106_low_13 (Length: 332)

Name: NF3106_low_13
Description: NF3106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3106_low_13
NF3106_low_13
[»] chr4 (33 HSPs)
chr4 (1-322)||(31903511-31903835)
chr4 (236-322)||(12034376-12034462)
chr4 (229-318)||(11840064-11840153)
chr4 (245-318)||(17381580-17381653)
chr4 (123-203)||(31969513-31969593)
chr4 (236-322)||(17381278-17381364)
chr4 (236-318)||(17753252-17753335)
chr4 (237-318)||(11839763-11839844)
chr4 (248-317)||(35763064-35763133)
chr4 (246-322)||(8170987-8171063)
chr4 (242-322)||(46804755-46804835)
chr4 (233-318)||(4161614-4161698)
chr4 (238-318)||(3528061-3528141)
chr4 (242-322)||(35255489-35255569)
chr4 (253-319)||(971856-971922)
chr4 (262-320)||(4215195-4215253)
chr4 (241-322)||(51151046-51151128)
chr4 (233-307)||(55132578-55132652)
chr4 (236-317)||(32934171-32934252)
chr4 (242-322)||(50384350-50384430)
chr4 (244-317)||(12922168-12922241)
chr4 (276-317)||(14810473-14810514)
chr4 (242-315)||(26499279-26499352)
chr4 (242-307)||(30316043-30316108)
chr4 (264-317)||(46216963-46217016)
chr4 (242-319)||(46781571-46781648)
chr4 (250-318)||(13834335-13834403)
chr4 (242-318)||(24806759-24806835)
chr4 (242-318)||(40317794-40317870)
chr4 (242-318)||(40327868-40327944)
chr4 (250-318)||(40407667-40407735)
chr4 (242-317)||(49724609-49724682)
chr4 (250-322)||(56095227-56095299)
[»] chr5 (17 HSPs)
chr5 (238-318)||(6217673-6217753)
chr5 (242-318)||(16127050-16127126)
chr5 (242-317)||(42420559-42420634)
chr5 (242-319)||(917187-917264)
chr5 (239-315)||(29686423-29686499)
chr5 (236-311)||(18969985-18970060)
chr5 (235-317)||(18970264-18970346)
chr5 (234-295)||(7314211-7314272)
chr5 (237-318)||(14468765-14468845)
chr5 (236-317)||(23159023-23159104)
chr5 (243-318)||(35293840-35293915)
chr5 (250-313)||(42420314-42420377)
chr5 (244-318)||(7756702-7756776)
chr5 (248-322)||(17676820-17676894)
chr5 (243-324)||(29714707-29714789)
chr5 (261-322)||(27001412-27001473)
chr5 (242-274)||(2707823-2707855)
[»] chr1 (23 HSPs)
chr1 (235-319)||(6728025-6728109)
chr1 (234-313)||(31134759-31134838)
chr1 (237-318)||(6541001-6541082)
chr1 (235-322)||(30050293-30050380)
chr1 (252-317)||(45679514-45679579)
chr1 (234-305)||(45392280-45392351)
chr1 (238-312)||(32670016-32670090)
chr1 (247-322)||(30519042-30519118)
chr1 (239-315)||(36144782-36144858)
chr1 (245-316)||(9890730-9890801)
chr1 (242-289)||(32669785-32669832)
chr1 (242-317)||(37228651-37228726)
chr1 (243-318)||(40967347-40967422)
chr1 (264-322)||(8778974-8779032)
chr1 (246-319)||(38340498-38340571)
chr1 (246-319)||(38445198-38445271)
chr1 (242-322)||(27463933-27464013)
chr1 (243-319)||(30050623-30050699)
chr1 (263-322)||(19464236-19464295)
chr1 (236-295)||(34177538-34177597)
chr1 (242-315)||(38267444-38267517)
chr1 (242-286)||(19954547-19954591)
chr1 (245-317)||(38901483-38901555)
[»] chr8 (20 HSPs)
chr8 (236-322)||(21601902-21601987)
chr8 (236-320)||(21145663-21145749)
chr8 (239-318)||(28802280-28802359)
chr8 (242-319)||(21600667-21600743)
chr8 (246-318)||(17488223-17488295)
chr8 (242-322)||(2987171-2987250)
chr8 (244-317)||(14523974-14524047)
chr8 (243-300)||(18080183-18080240)
chr8 (242-319)||(41302631-41302708)
chr8 (238-318)||(7574368-7574447)
chr8 (242-317)||(33590092-33590167)
chr8 (235-317)||(3662309-3662391)
chr8 (242-319)||(4586750-4586827)
chr8 (235-308)||(8340345-8340418)
chr8 (242-307)||(8982309-8982374)
chr8 (245-286)||(12680885-12680926)
chr8 (241-318)||(21215897-21215974)
chr8 (232-313)||(23357420-23357501)
chr8 (235-303)||(2988389-2988457)
chr8 (242-318)||(40680943-40681019)
[»] chr3 (21 HSPs)
chr3 (238-315)||(14984403-14984479)
chr3 (242-322)||(30843830-30843910)
chr3 (235-318)||(46848400-46848483)
chr3 (242-313)||(51889757-51889828)
chr3 (236-318)||(621889-621969)
chr3 (242-307)||(43837083-43837148)
chr3 (242-314)||(30669357-30669429)
chr3 (243-318)||(53705982-53706057)
chr3 (237-319)||(21568562-21568644)
chr3 (242-305)||(24255220-24255283)
chr3 (239-322)||(40619216-40619299)
chr3 (240-318)||(22235186-22235263)
chr3 (242-292)||(23567355-23567405)
chr3 (242-312)||(30669628-30669698)
chr3 (239-289)||(41898079-41898129)
chr3 (249-318)||(621610-621679)
chr3 (238-315)||(21568297-21568374)
chr3 (240-317)||(26483035-26483112)
chr3 (242-318)||(284320-284396)
chr3 (242-286)||(14984716-14984760)
chr3 (249-289)||(27071207-27071247)
[»] chr7 (22 HSPs)
chr7 (235-307)||(18942730-18942802)
chr7 (238-322)||(32996528-32996612)
chr7 (237-295)||(30839954-30840012)
chr7 (238-322)||(5358203-5358287)
chr7 (242-322)||(8062896-8062976)
chr7 (246-322)||(20889444-20889520)
chr7 (242-294)||(21401751-21401803)
chr7 (250-322)||(38838672-38838744)
chr7 (243-318)||(11458871-11458946)
chr7 (261-318)||(12927837-12927894)
chr7 (242-307)||(19303600-19303664)
chr7 (246-322)||(14669237-14669313)
chr7 (238-306)||(25993793-25993860)
chr7 (242-322)||(40355096-40355176)
chr7 (242-321)||(34703629-34703707)
chr7 (261-315)||(25688974-25689028)
chr7 (261-322)||(12849744-12849805)
chr7 (240-305)||(23190963-23191028)
chr7 (262-307)||(29196773-29196818)
chr7 (240-305)||(45540036-45540101)
chr7 (251-319)||(1247507-1247575)
chr7 (243-319)||(39791827-39791902)
[»] scaffold0329 (2 HSPs)
scaffold0329 (238-318)||(6471-6551)
scaffold0329 (242-318)||(6196-6272)
[»] chr6 (16 HSPs)
chr6 (242-317)||(10219537-10219612)
chr6 (242-318)||(516022-516098)
chr6 (238-318)||(9436770-9436850)
chr6 (242-322)||(10067747-10067827)
chr6 (243-317)||(7792013-7792087)
chr6 (238-319)||(33806939-33807020)
chr6 (242-318)||(6524844-6524920)
chr6 (242-318)||(6699687-6699763)
chr6 (242-318)||(10067454-10067530)
chr6 (242-322)||(19264748-19264827)
chr6 (235-318)||(31141910-31141993)
chr6 (228-318)||(21020837-21020927)
chr6 (242-312)||(24285283-24285353)
chr6 (261-315)||(34937448-34937502)
chr6 (237-318)||(26368921-26369002)
chr6 (242-318)||(33806650-33806726)
[»] chr2 (16 HSPs)
chr2 (242-315)||(20167625-20167698)
chr2 (246-313)||(20360299-20360366)
chr2 (237-322)||(7165772-7165857)
chr2 (243-319)||(1517541-1517617)
chr2 (242-314)||(39273385-39273457)
chr2 (242-322)||(40124264-40124344)
chr2 (243-295)||(23359344-23359396)
chr2 (239-318)||(21603707-21603786)
chr2 (278-321)||(34883934-34883977)
chr2 (250-317)||(41746539-41746606)
chr2 (252-318)||(5708989-5709055)
chr2 (248-318)||(9471823-9471893)
chr2 (265-322)||(18903195-18903252)
chr2 (251-319)||(1517831-1517899)
chr2 (242-322)||(6788512-6788592)
chr2 (242-322)||(15301612-15301692)
[»] scaffold0086 (1 HSPs)
scaffold0086 (246-315)||(21890-21959)
[»] scaffold0050 (1 HSPs)
scaffold0050 (239-276)||(81635-81672)
[»] scaffold0003 (2 HSPs)
scaffold0003 (244-293)||(89359-89408)
scaffold0003 (243-322)||(329062-329142)
[»] scaffold0002 (1 HSPs)
scaffold0002 (276-315)||(348964-349003)
[»] scaffold0005 (1 HSPs)
scaffold0005 (276-317)||(29214-29255)
[»] scaffold0252 (1 HSPs)
scaffold0252 (244-316)||(17301-17373)


Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 31903835 - 31903511
Alignment:
Q  1 tgtaacttat--cttttggtctcaaaactcacttgatatggtaacgcttcaattaaagtaagagtgagagaaaactcaattggataatcatgtaataata 98  Q
    ||||||||||  ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31903835 tgtaacttataacttttgtgctcaaaactcacttgatatggtaacgcttcaattaaagtaagagtgagagaaaactcaattggataatcatgtaataata 31903736  T
Q  99 attagtgatatacagggaatattgattcttacattatccaaagtttaactagttgttagactcttttaagtgaaataaatagatagttatgattattggt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  31903735 attagtgatatacagggaatattgattcttacattatccaaagtttaactagttgttagactcttttgagtgaaataaatggatagttatgattattggt 31903636  T
Q  199 gtgatgag-nnnnnnnnaagcctattggtgttattattaagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacg 297  Q
    ||||||||         |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31903635 gtgatgagtttttttttaagcctattggtgttattattaaggggtaatggtcattttggtctctgaatgtgtaacgaatagttacaatagtccctcaacg 31903536  T
Q  298 tatcaaaattccaaaatagtctctg 322  Q
    |||||||||||||||||||||||||    
T  31903535 tatcaaaattccaaaatagtctctg 31903511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 236 - 322
Target Start/End: Original strand, 12034376 - 12034462
Alignment:
Q  236 aagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    ||||| ||||||||||||||||| |||||||| |||||| |||||||||||||||||||| ||||||||||| ||||||||||||||    
T  12034376 aaggggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 12034462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 229 - 318
Target Start/End: Complemental strand, 11840153 - 11840064
Alignment:
Q  229 tattattaagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    |||||||||||| ||||||||||||||||| ||||||| |||| || ||||| |||||| ||||||| ||||||||||| ||||||||||    
T  11840153 tattattaaggggtaatagtcattttggtccctgaatgcgtaaggagtagtcgcaataggccctcaatgtatcaaaatttcaaaatagtc 11840064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 17381653 - 17381580
Alignment:
Q  245 tagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    |||||| ||||||| ||||||| ||||| | |||||||||||||||||||| ||||||||||||||||||||||    
T  17381653 tagtcactttggtccctgaatgagtaacaagtagtcacaatagtccctcaatgtatcaaaattccaaaatagtc 17381580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 31969593 - 31969513
Alignment:
Q  123 attcttacattatccaaagtttaactagttgttagactcttttaagtgaaataaatagatagttatgattattggtgtgat 203  Q
    |||| |||||||||||||||||||||| ||||||||||||||  |||||||||||  |||| |||||||||| ||||||||    
T  31969593 attcctacattatccaaagtttaactacttgttagactctttggagtgaaataaaaggataattatgattataggtgtgat 31969513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 236 - 322
Target Start/End: Original strand, 17381278 - 17381364
Alignment:
Q  236 aagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    ||||| ||||||||||||||||  ||||||||||| | | ||||||||||||||| |||| ||||||||||| ||||| ||||||||    
T  17381278 aaggggtaatagtcattttggttcctgaatgtgtagcaagtagtcacaatagtccttcaatgtatcaaaatttcaaaaaagtctctg 17381364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 17753252 - 17753335
Alignment:
Q  236 aagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtc-cctcaacgtatcaaaattccaaaatagtc 318  Q
    |||||||||||||||||||| ||||||||| ||||| || ||||||||||||||   |||| ||||||||||| ||||||||||    
T  17753252 aagggataatagtcattttgatctctgaatatgtaatgagtagtcacaatagtcatttcaatgtatcaaaatttcaaaatagtc 17753335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 318
Target Start/End: Original strand, 11839763 - 11839844
Alignment:
Q  237 agggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    |||| |||||| ||||||||||| ||||| |||||||| ||| ||||||||||||||||  |||| ||||| ||||||||||    
T  11839763 aggggtaatagccattttggtctatgaatttgtaacgagtagccacaatagtccctcaatatatcgaaatttcaaaatagtc 11839844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 248 - 317
Target Start/End: Original strand, 35763064 - 35763133
Alignment:
Q  248 tcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagt 317  Q
    ||||||| ||||||||||||||||||| ||||||||||||||    ||||||||||||||| ||||||||    
T  35763064 tcattttcgtctctgaatgtgtaacgagtagtcacaatagtcatcgaacgtatcaaaattcaaaaatagt 35763133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 322
Target Start/End: Complemental strand, 8171063 - 8170987
Alignment:
Q  246 agtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    ||||| ||||||| ||| |||||||| || |||||| ||||||||||||| |||| |||||| ||||||||||||||    
T  8171063 agtcactttggtccctggatgtgtaatgagtagtcataatagtccctcaatgtataaaaatttcaaaatagtctctg 8170987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 46804755 - 46804835
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    ||||||||| | |||||| ||||| ||||||||  ||| ||||||||||||||| |||||||||||  |||||||||||||    
T  46804755 taatagtcactatggtctttgaatatgtaacgagcagtgacaatagtccctcaatgtatcaaaattttaaaatagtctctg 46804835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 4161614 - 4161698
Alignment:
Q  233 attaagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    |||||||| ||||||||| ||| ||| |  ||||||||| || ||||||||||||||| |||| ||||||||||| ||||||||||    
T  4161614 attaaggg-taatagtcactttcgtccccaaatgtgtaatgagtagtcacaatagtccttcaatgtatcaaaatttcaaaatagtc 4161698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 318
Target Start/End: Original strand, 3528061 - 3528141
Alignment:
Q  238 gggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    ||||||||| ||| |||||||  | ||||||||| ||||||||| ||||||||||||| ||| || |||| ||||||||||    
T  3528061 gggataataatcactttggtccataaatgtgtaatgaatagtcaaaatagtccctcaatgtaccagaatttcaaaatagtc 3528141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 322
Target Start/End: Complemental strand, 35255569 - 35255489
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    ||||||| ||||||||| || ||| |||||||| |||||||||||||| ||||| |||| ||||||  |||||||| ||||    
T  35255569 taatagttattttggtccctaaatatgtaacgagtagtcacaatagtctctcaatgtattaaaattttaaaatagtatctg 35255489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 319
Target Start/End: Original strand, 971856 - 971922
Alignment:
Q  253 ttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtct 319  Q
    |||||| |||||| |||||||| | ||||||||||||  |||| ||||||||||| |||||||||||    
T  971856 ttggtcactgaatttgtaacgagttgtcacaatagtcattcaatgtatcaaaatttcaaaatagtct 971922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 320
Target Start/End: Complemental strand, 4215253 - 4215195
Alignment:
Q  262 gaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctc 320  Q
    ||||||||||||| ||||| |||||||||||||| | |||||||||  |||||||||||    
T  4215253 gaatgtgtaacgagtagtcgcaatagtccctcaatgaatcaaaattttaaaatagtctc 4215195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 322
Target Start/End: Complemental strand, 51151128 - 51151046
Alignment:
Q  241 ataatagtcattttggtctctgaatgtgtaacgaatagtcacaat-agtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    |||||||| |||||||||  |||||||||||||| |||||||||| | || ||||| |||| ||||||  |||||||||||||    
T  51151128 ataatagttattttggtccttgaatgtgtaacgagtagtcacaataaatctctcaatgtattaaaattttaaaatagtctctg 51151046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 307
Target Start/End: Complemental strand, 55132652 - 55132578
Alignment:
Q  233 attaagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaatt 307  Q
    ||||| ||||||||||||||||| ||||||||||||||| ||  ||||| ||||||   |||| |||||||||||    
T  55132652 attaaaggataatagtcattttgatctctgaatgtgtaaggagcagtcaaaatagtttttcaatgtatcaaaatt 55132578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 317
Target Start/End: Complemental strand, 32934252 - 32934171
Alignment:
Q  236 aagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagt 317  Q
    ||||| ||||| ||||||||||| |||||||||||| || |   || ||||||||||||| |||||||||||  ||||||||    
T  32934252 aaggggtaataatcattttggtccctgaatgtgtaaggagtgaccataatagtccctcaatgtatcaaaattttaaaatagt 32934171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 50384350 - 50384430
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    ||||| ||||||||||  |||||||||||| || ||| || |||||| || ||| |||| |||||| ||||||||||||||    
T  50384350 taataatcattttggttcctgaatgtgtaatgattagccataatagtaccccaatgtattaaaatttcaaaatagtctctg 50384430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 12922168 - 12922241
Alignment:
Q  244 atagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagt 317  Q
    ||||| ||||||||| ||||||||||||  | |||||||||||||   |||| ||||| ||||| |||||||||    
T  12922168 atagttattttggtccctgaatgtgtaataagtagtcacaatagtatttcaatgtatcgaaatttcaaaatagt 12922241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 14810514 - 14810473
Alignment:
Q  276 tagtcacaatagtccctcaacgtatcaaaattccaaaatagt 317  Q
    ||||||||||||||| || ||||||||||||| |||||||||    
T  14810514 tagtcacaatagtccttcgacgtatcaaaatttcaaaatagt 14810473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 315
Target Start/End: Original strand, 26499279 - 26499352
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaata 315  Q
    ||||||||||||||||  ||||||||||||  | ||||||||||| || || || |||| ||||||| ||||||    
T  26499279 taatagtcattttggttcctgaatgtgtaaaaagtagtcacaataatctcttaatgtattaaaattctaaaata 26499352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 30316108 - 30316043
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaatt 307  Q
    |||||||||| |||||| |||||||| |||  | ||||||||| ||||| |||| |||||||||||    
T  30316108 taatagtcatattggtccctgaatgtataataagtagtcacaaaagtccttcaatgtatcaaaatt 30316043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 46216963 - 46217016
Alignment:
Q  264 atgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagt 317  Q
    |||||||| ||||||| ||||||||| ||||| |||||||||||  ||||||||    
T  46216963 atgtgtaaggaatagtaacaatagtctctcaatgtatcaaaattttaaaatagt 46217016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 319
Target Start/End: Original strand, 46781571 - 46781648
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtct 319  Q
    ||||| |||||||  ||||||||| ||||||||||| ||| ||||||| |||||  |||| |||||  ||||||||||    
T  46781571 taataatcatttttatctctgaatttgtaacgaataatcataatagtctctcaatatatcgaaattaaaaaatagtct 46781648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 13834335 - 13834403
Alignment:
Q  250 attttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    ||||||||| |||||||||||| || ||  || |||||||||||||  ||||||||||  |||||||||    
T  13834335 attttggtccctgaatgtgtaaggagtaaccataatagtccctcaatttatcaaaattttaaaatagtc 13834403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 318
Target Start/End: Complemental strand, 24806835 - 24806759
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    |||||||||||||||| |||||||| ||||  | |||| |||||||||||| || ||||  |||||  |||||||||    
T  24806835 taatagtcattttggtatctgaatgcgtaataagtagttacaatagtcccttaatgtattgaaatttgaaaatagtc 24806759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 318
Target Start/End: Complemental strand, 40317870 - 40317794
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    |||||||||||||| ||  ||||||||||| |||| ||||||||||| | |||| |||| ||| ||  |||||||||    
T  40317870 taatagtcattttgatccatgaatgtgtaatgaattgtcacaatagttcatcaatgtataaaatttttaaaatagtc 40317794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 318
Target Start/End: Complemental strand, 40327944 - 40327868
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    |||||||||||||| ||  ||||||||||| |||| ||||||||||| | |||| |||| ||| ||  |||||||||    
T  40327944 taatagtcattttgatccatgaatgtgtaatgaattgtcacaatagttcatcaatgtataaaatttttaaaatagtc 40327868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 318
Target Start/End: Complemental strand, 40407735 - 40407667
Alignment:
Q  250 attttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    ||||||||| |||||||||||| || ||  || |||||||| |||| |||||||||||  |||||||||    
T  40407735 attttggtccctgaatgtgtaaggagtaaccataatagtccttcaatgtatcaaaattttaaaatagtc 40407667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 49724682 - 49724609
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagt 317  Q
    ||||||| | |||| ||| |||||||||||||| ||||| ||| | ||||||||  |||||||||| |||||||||    
T  49724682 taatagttactttgatctttgaatgtgtaacgagtagtctcaaaaatccctcaa--tatcaaaatttcaaaatagt 49724609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 56095299 - 56095227
Alignment:
Q  250 attttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    ||||||||| || |||||||||||| |||||||||||||  ||||  |||| ||||||  ||||| |||||||    
T  56095299 attttggtcccttaatgtgtaacgagtagtcacaatagtatctcattgtattaaaattttaaaattgtctctg 56095227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 238 - 318
Target Start/End: Complemental strand, 6217753 - 6217673
Alignment:
Q  238 gggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    |||||||||||||||||||||  |||||||||| ||||||| |||||||||||||||| ||||||||||| ||||||||||    
T  6217753 gggataatagtcattttggtccatgaatgtgtagcgaatagccacaatagtccctcaatgtatcaaaatttcaaaatagtc 6217673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 16127050 - 16127126
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    ||||||||||||||||| || ||||||||| || |||||||||||||| ||||| ||||||||||| ||||||||||    
T  16127050 taatagtcattttggtccctaaatgtgtaaggagtagtcacaatagtctctcaaagtatcaaaatttcaaaatagtc 16127126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 42420634 - 42420559
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagt 317  Q
    ||||||| |||||||||||||||||||||||| ||||||||||| |||  | || |||||||||||  ||||||||    
T  42420634 taatagttattttggtctctgaatgtgtaacgtatagtcacaattgtctttaaatgtatcaaaattttaaaatagt 42420559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 319
Target Start/End: Complemental strand, 917264 - 917187
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtct 319  Q
    ||||||||||||||||  ||||||||||||  | |||||||||| ||||||||| ||||| |||||  ||||||||||    
T  917264 taatagtcattttggttcctgaatgtgtaaatattagtcacaatcgtccctcaatgtatcgaaattttaaaatagtct 917187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 29686423 - 29686499
Alignment:
Q  239 ggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaata 315  Q
    |||||||||||| |||||||  ||||||| ||| || ||||||||||| |||||||| |||| |||||| |||||||    
T  29686423 ggataatagtcactttggtccatgaatgtataatgagtagtcacaataatccctcaatgtattaaaatttcaaaata 29686499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 311
Target Start/End: Original strand, 18969985 - 18970060
Alignment:
Q  236 aagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaa 311  Q
    ||||| ||||||||||||| ||| ||| || | |||||||||| |||||||||||||||| || || |||||||||    
T  18969985 aaggggtaatagtcattttagtccctggatctataacgaatagccacaatagtccctcaatgtgtcgaaattccaa 18970060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 18970346 - 18970264
Alignment:
Q  235 taagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagt 317  Q
    |||||| |||||||||||||||||   |||||| |||||| ||| ||||||||||| | || ||||| |||||| ||||||||    
T  18970346 taagggctaatagtcattttggtccaggaatgtataacgagtagccacaatagtccttgaatgtatccaaattcaaaaatagt 18970264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 7314272 - 7314211
Alignment:
Q  234 ttaagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaa 295  Q
    |||||||||||||||||||||| ||||  |||||||||||| ||  ||||||||||| ||||    
T  7314272 ttaagggataatagtcattttgatctccaaatgtgtaacgagtaagcacaatagtccatcaa 7314211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 318
Target Start/End: Original strand, 14468765 - 14468845
Alignment:
Q  237 agggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    ||||||||||||||| ||||||  ||||| ||||||||||||  |||||||| | |||| ||||| ||||| ||||||||||    
T  14468765 agggataatagtcatgttggtccttgaatatgtaacgaatagctacaatagt-catcaatgtatcgaaatttcaaaatagtc 14468845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 317
Target Start/End: Original strand, 23159023 - 23159104
Alignment:
Q  236 aagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagt 317  Q
    ||||| ||||||||| ||| ||| |||||||||||| || |||| | |||||||| |||| |||||||||||  ||||||||    
T  23159023 aaggggtaatagtcactttagtccctgaatgtgtaatgattagttataatagtccatcaatgtatcaaaattttaaaatagt 23159104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 318
Target Start/End: Complemental strand, 35293915 - 35293840
Alignment:
Q  243 aatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    |||||||||||| |||||||||| | |||||||||| ||||||  ||| ||||  |||| ||||| ||||||||||    
T  35293915 aatagtcattttagtctctgaatatataacgaatagccacaatgatccttcaatctatcgaaatttcaaaatagtc 35293840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 42420314 - 42420377
Alignment:
Q  250 attttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaa 313  Q
    |||||||||  |||||||||||| |||||||| ||| ||||||||| ||||||| ||| |||||    
T  42420314 attttggtccatgaatgtgtaacaaatagtcataatcgtccctcaatgtatcaacatttcaaaa 42420377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 7756776 - 7756702
Alignment:
Q  244 atagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    ||||||||||||||| || |||||| ||||||||  ||||||||| ||| || ||||  ||||| ||||||||||    
T  7756776 atagtcattttggtccctaaatgtgcaacgaataaccacaatagttcctgaatgtattgaaatttcaaaatagtc 7756702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 322
Target Start/End: Complemental strand, 17676894 - 17676820
Alignment:
Q  248 tcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    |||||||||||  |||||||||||||| ||||||||| | ||||||||   ||| ||||  ||||||||||||||    
T  17676894 tcattttggtccttgaatgtgtaacgagtagtcacaacaatccctcaattaatcgaaatatcaaaatagtctctg 17676820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 324
Target Start/End: Complemental strand, 29714789 - 29714707
Alignment:
Q  243 aatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtc-cctcaacgtatcaaaattccaaaatagtctctgct 324  Q
    ||||||||||||||| | |||||||||||| | |||| |||||||||   |||| ||||| ||||| |||||| |||||||||    
T  29714789 aatagtcattttggtttttgaatgtgtaaccagtagttacaatagtcttatcaatgtatcgaaatttcaaaattgtctctgct 29714707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 27001473 - 27001412
Alignment:
Q  261 tgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    ||||||||||| || |||||||||||||| ||| |  ||||||||||  |||||||||||||    
T  27001473 tgaatgtgtaatgagtagtcacaatagtctctcgatatatcaaaattttaaaatagtctctg 27001412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 2707855 - 2707823
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacga 274  Q
    ||||||||||||||||| |||||||||||||||    
T  2707855 taatagtcattttggtccctgaatgtgtaacga 2707823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 6728109 - 6728025
Alignment:
Q  235 taagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtct 319  Q
    |||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||    
T  6728109 taaggggtgatagtcattttcgtccctgaatgtgtaacgaatagtcacaatagtccttcaatgaatcaaaattccaaaatagtct 6728025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 313
Target Start/End: Complemental strand, 31134838 - 31134759
Alignment:
Q  234 ttaagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaa 313  Q
    ||||||| ||||||||||||||||| ||||||||||||||| ||||||| ||||||||  || |||| ||||||||||||    
T  31134838 ttaaggggtaatagtcattttggtccctgaatgtgtaacgagtagtcacgatagtcccaaaatgtataaaaattccaaaa 31134759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 237 - 318
Target Start/End: Original strand, 6541001 - 6541082
Alignment:
Q  237 agggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    ||||||||||||||||||  || |||||||||||||||||||||| |||||||| | || ||||||||||| | ||||||||    
T  6541001 agggataatagtcattttaatccctgaatgtgtaacgaatagtcataatagtcctttaatgtatcaaaatttccaaatagtc 6541082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 322
Target Start/End: Original strand, 30050293 - 30050380
Alignment:
Q  235 taagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    ||||||||||||| |||||| || |||||||||||||| ||||||||||||| | | |||| |||||| ||||  |||||||||||||    
T  30050293 taagggataatagacattttagtgtctgaatgtgtaacaaatagtcacaataattcttcaatgtatcataattttaaaatagtctctg 30050380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 252 - 317
Target Start/End: Original strand, 45679514 - 45679579
Alignment:
Q  252 tttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagt 317  Q
    ||||||||||||||||||||||| ||||||||||| ||| ||||||||| ||||||  ||||||||    
T  45679514 tttggtctctgaatgtgtaacgagtagtcacaataatccatcaacgtattaaaattttaaaatagt 45679579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 45392280 - 45392351
Alignment:
Q  234 ttaagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaa 305  Q
    ||||||| |||||||||||||| |  |||||||||||| || |||||| ||||||||||||| |||||||||    
T  45392280 ttaaggggtaatagtcattttgattcctgaatgtgtaatgagtagtcaaaatagtccctcaatgtatcaaaa 45392351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 32670090 - 32670016
Alignment:
Q  238 gggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaa 312  Q
    |||||||||||||||||| || ||||||||||||||| || |||||||||||| |||| | ||| ||||| ||||    
T  32670090 gggataatagtcattttgatccctgaatgtgtaacgagtattcacaatagtccttcaatggatcgaaatttcaaa 32670016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 322
Target Start/End: Original strand, 30519042 - 30519118
Alignment:
Q  247 gtcattttggtctctgaatgtgtaacgaatagtc-acaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    ||||||||||||  |||||||||||| ||||||| |||||||||| | || ||||| ||||| ||||||||||||||    
T  30519042 gtcattttggtccttgaatgtgtaacaaatagtccacaatagtccttaaatgtatcgaaatttcaaaatagtctctg 30519118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 36144782 - 36144858
Alignment:
Q  239 ggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaata 315  Q
    ||||||||||||||||||||  ||||| ||||| || || |||||||| || | ||| |||||||||||||||||||    
T  36144782 ggataatagtcattttggtccttgaatatgtaatgagtaatcacaatactctcccaatgtatcaaaattccaaaata 36144858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 316
Target Start/End: Complemental strand, 9890801 - 9890730
Alignment:
Q  245 tagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatag 316  Q
    |||||||||||||  ||||||||| ||||| || ||||||||||| ||||| |||| ||||||| |||||||    
T  9890801 tagtcattttggttcctgaatgtggaacgattaatcacaatagtctctcaatgtattaaaattctaaaatag 9890730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 32669785 - 32669832
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtc 289  Q
    |||||||||||||||||  |||||||||||||| ||||||||||||||    
T  32669785 taatagtcattttggtccatgaatgtgtaacgagtagtcacaatagtc 32669832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 37228651 - 37228726
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagt 317  Q
    ||||||||||||||||| ||||||||  ||| ||||||||| ||||||  | || |||||||||||| ||||||||    
T  37228651 taatagtcattttggtccctgaatgtacaaccaatagtcactatagtcatttaatgtatcaaaattctaaaatagt 37228726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 318
Target Start/End: Complemental strand, 40967422 - 40967347
Alignment:
Q  243 aatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    |||||||||||| |||||||||| || ||||||||| ||||||| ||| |||| ||||| |||||  |||||||||    
T  40967422 aatagtcattttcgtctctgaatatgcaacgaatagccacaataatccttcaaagtatcgaaattataaaatagtc 40967347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 322
Target Start/End: Original strand, 8778974 - 8779032
Alignment:
Q  264 atgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    |||||||| |||||||||| ||||||||||||  |||||||||| ||||||||| ||||    
T  8778974 atgtgtaatgaatagtcacgatagtccctcaatatatcaaaatttcaaaatagtttctg 8779032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 319
Target Start/End: Complemental strand, 38340571 - 38340498
Alignment:
Q  246 agtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtct 319  Q
    |||||||||||||| |||||||| |||||||||||||| || | | | || ||||| ||||||||||| |||||    
T  38340571 agtcattttggtctatgaatgtgcaacgaatagtcacagtactactttaatgtatcgaaattccaaaagagtct 38340498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 319
Target Start/End: Complemental strand, 38445271 - 38445198
Alignment:
Q  246 agtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtct 319  Q
    |||||||||| |  ||||||||| ||| ||||||||||||||||| | || ||||| |||||| ||||||||||    
T  38445271 agtcattttgattcctgaatgtgcaacaaatagtcacaatagtcctttaatgtatcgaaattctaaaatagtct 38445198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 322
Target Start/End: Complemental strand, 27464013 - 27463933
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    ||||||||||| ||||| || ||||||||| || ||  || | ||||| ||||| ||||||||||| ||||||||||||||    
T  27464013 taatagtcattgtggtccctaaatgtgtaaggagtaaccatactagtctctcaatgtatcaaaatttcaaaatagtctctg 27463933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 319
Target Start/End: Complemental strand, 30050699 - 30050623
Alignment:
Q  243 aatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtct 319  Q
    |||||| |||||||||| ||||| ||||| || ||| || |||||||||| || ||||| ||||| |||||||||||    
T  30050699 aatagttattttggtctttgaatttgtaatgattagccaaaatagtcccttaatgtatcgaaatttcaaaatagtct 30050623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 322
Target Start/End: Original strand, 19464236 - 19464295
Alignment:
Q  263 aatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    |||||||||| | ||||||||||||||| |||| |||||||||||  ||||| |||||||    
T  19464236 aatgtgtaacaagtagtcacaatagtccttcaatgtatcaaaatttaaaaatggtctctg 19464295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 34177597 - 34177538
Alignment:
Q  236 aagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaa 295  Q
    ||||| ||||||||||||||||| |||||||||||| || |||  |||||||||| ||||    
T  34177597 aaggggtaatagtcattttggtccctgaatgtgtaatgagtagctacaatagtccttcaa 34177538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 315
Target Start/End: Complemental strand, 38267517 - 38267444
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaata 315  Q
    ||||||||||||||||| || ||| ||||   | | |||||||||||||||||| |||| |||||| |||||||    
T  38267517 taatagtcattttggtccctcaatatgtagtaagtggtcacaatagtccctcaatgtataaaaatttcaaaata 38267444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 19954547 - 19954591
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaata 286  Q
    ||||| ||||||||||| |||||||||||| ||||| ||||||||    
T  19954547 taataatcattttggtccctgaatgtgtaaagaataatcacaata 19954591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 38901483 - 38901555
Alignment:
Q  245 tagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagt 317  Q
    ||||||||||| ||  | || ||||||||| |||||||||||||||||||  ||||  ||||| |||||||||    
T  38901483 tagtcattttgatccttaaacgtgtaacgagtagtcacaatagtccctcattgtattgaaattacaaaatagt 38901555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 236 - 322
Target Start/End: Original strand, 21601902 - 21601987
Alignment:
Q  236 aagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    ||||| |||| |||||||||||| |||||| |||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  21601902 aaggggtaatggtcattttggtc-ctgaatatgtaacaaatagtcacaatagtccatcaatgtatcaaaattccaaaatagtctctg 21601987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 236 - 320
Target Start/End: Complemental strand, 21145749 - 21145663
Alignment:
Q  236 aagggataatagtcattttggtctctgaatgtgtaacgaatagtcaca--atagtccctcaacgtatcaaaattccaaaatagtctc 320  Q
    ||||||||||||||||||||||  ||||||||||||||| ||| ||||  ||||||  |||||||||| ||||||||||||||||||    
T  21145749 aagggataatagtcattttggttcctgaatgtgtaacgagtagccacaatatagtctatcaacgtatcgaaattccaaaatagtctc 21145663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 28802280 - 28802359
Alignment:
Q  239 ggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    |||||||||||||||| ||| ||||||||||||| ||||||||||||||||| || | |||||||||||  |||||||||    
T  28802280 ggataatagtcattttagtcgctgaatgtgtaacaaatagtcacaatagtccatcgatgtatcaaaattttaaaatagtc 28802359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 242 - 319
Target Start/End: Complemental strand, 21600743 - 21600667
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtct 319  Q
    ||||||||| |||||||||||||||||||| || |||||| |||||||| |||| ||||||||||| |||||||||||    
T  21600743 taatagtcaatttggtctctgaatgtgtaatgattagtcataatagtccatcaatgtatcaaaatt-caaaatagtct 21600667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 17488295 - 17488223
Alignment:
Q  246 agtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    |||||||||| || ||||||||||||| | |||||||||||||||||||| ||| | ||||| ||||||||||    
T  17488295 agtcattttgctccctgaatgtgtaacaagtagtcacaatagtccctcaatgtagcgaaatttcaaaatagtc 17488223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 322
Target Start/End: Complemental strand, 2987250 - 2987171
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    ||||||||||||||||  || |||||| ||||| |||||||||||||  ||||| |||||||||||  |||||||||||||    
T  2987250 taatagtcattttggttcctaaatgtgaaacgattagtcacaatagt-tctcaatgtatcaaaattttaaaatagtctctg 2987171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 317
Target Start/End: Complemental strand, 14524047 - 14523974
Alignment:
Q  244 atagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagt 317  Q
    |||| ||||||| |||||||||||||||| | |||||| |||||||||| || || || ||||| |||||||||    
T  14524047 atagacattttgatctctgaatgtgtaacaagtagtcataatagtcccttaatgtgtcgaaatttcaaaatagt 14523974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 18080183 - 18080240
Alignment:
Q  243 aatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtat 300  Q
    |||||||||||||||| || |||||||||| |||||||||||| |||| |||| ||||    
T  18080183 aatagtcattttggtccctaaatgtgtaacaaatagtcacaatggtccttcaatgtat 18080240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 319
Target Start/End: Original strand, 41302631 - 41302708
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtct 319  Q
    ||||||| |||||||| | |||||||||||||| || |||||||||||  |||| |||| ||||||  ||||||||||    
T  41302631 taatagttattttggtatatgaatgtgtaacgagtaatcacaatagtctttcaaagtattaaaattttaaaatagtct 41302708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 318
Target Start/End: Original strand, 7574368 - 7574447
Alignment:
Q  238 gggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    |||||||||| ||||||||||  |||||||||||| | || ||| ||||||||| ||| ||||| ||||| ||||||||||    
T  7574368 gggataatagacattttggtccttgaatgtgtaacaagtaatcataatagtcccacaatgtatc-aaatttcaaaatagtc 7574447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 33590092 - 33590167
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagt 317  Q
    ||||||||||||| || ||||||| || ||| |||| ||||||||||| ||||| |||| ||||||  ||||||||    
T  33590092 taatagtcattttagtatctgaatatgcaacaaataatcacaatagtctctcaatgtattaaaattgtaaaatagt 33590167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 3662309 - 3662391
Alignment:
Q  235 taagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagt 317  Q
    |||||||||||| | ||||||||| || | ||||||| || ||  || ||||||||||||| |||||||||||  ||||||||    
T  3662309 taagggataataattattttggtccctaattgtgtaaggagtaaccataatagtccctcaatgtatcaaaattttaaaatagt 3662391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 319
Target Start/End: Original strand, 4586750 - 4586827
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtct 319  Q
    ||||||| |||||| ||  |||||||||||||| |||| ||||||||| || || |||| ||||||  ||||||||||    
T  4586750 taatagttattttgatccttgaatgtgtaacgagtagttacaatagtctcttaatgtattaaaattttaaaatagtct 4586827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 8340418 - 8340345
Alignment:
Q  235 taagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattc 308  Q
    |||||| ||||||||||||||||   ||||||| ||| || ||||||||| ||||| | || ||||||||||||    
T  8340418 taagggttaatagtcattttggttcttgaatgtataatgagtagtcacaacagtcctttaatgtatcaaaattc 8340345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 8982374 - 8982309
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaatt 307  Q
    ||||||||||||| || ||||||||| ||| || |||||||||||||  ||| | |||||||||||    
T  8982374 taatagtcatttttgtttctgaatgtataatgattagtcacaatagtttctcgatgtatcaaaatt 8982309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 12680885 - 12680926
Alignment:
Q  245 tagtcattttggtctctgaatgtgtaacgaatagtcacaata 286  Q
    |||||||||| |||| | ||||||||||||||||||||||||    
T  12680885 tagtcattttcgtctataaatgtgtaacgaatagtcacaata 12680926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 318
Target Start/End: Original strand, 21215897 - 21215974
Alignment:
Q  241 ataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    ||||||||||||||||||  ||||| || || || ||| ||||||||||| |||| ||||  ||||| ||||||||||    
T  21215897 ataatagtcattttggtcattgaatatggaatgagtagccacaatagtccttcaatgtattgaaatttcaaaatagtc 21215974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 313
Target Start/End: Complemental strand, 23357501 - 23357420
Alignment:
Q  232 tattaagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaa 313  Q
    |||||||||||| || ||| ||| ||| |||||||||||| || ||||||||||| || || || ||||| ||||| |||||    
T  23357501 tattaagggatattaatcactttagtcgctgaatgtgtaatgagtagtcacaataatctcttaatgtatctaaatttcaaaa 23357420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 2988457 - 2988389
Alignment:
Q  235 taagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaa 303  Q
    |||||||||||||| | |||||||||||||| ||||| || ||||||  ||||||  |||| |||||||    
T  2988457 taagggataatagttactttggtctctgaatatgtaatgagtagtcattatagtcattcaatgtatcaa 2988389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 318
Target Start/End: Complemental strand, 40681019 - 40680943
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    ||||||| ||||| ||||||||||||||||| | || | |||||||||| |    ||||| ||||||||||||||||    
T  40681019 taatagttattttagtctctgaatgtgtaacaagtaattacaatagtccttgggtgtatcgaaattccaaaatagtc 40680943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 315
Target Start/End: Original strand, 14984403 - 14984479
Alignment:
Q  238 gggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaata 315  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||  |||| ||||| |||||||    
T  14984403 gggataatagtcattttggtc-ctgaatgtgtaacgagtagtcacaatagtccctcaatatatcgaaatttcaaaata 14984479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 242 - 322
Target Start/End: Complemental strand, 30843910 - 30843830
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    ||||||||| ||||||  |||||||||||| || |||||||||||||| || || ||||||||||||||||||||||||||    
T  30843910 taatagtcactttggttcctgaatgtgtaatgagtagtcacaatagtctcttaatgtatcaaaattccaaaatagtctctg 30843830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 46848483 - 46848400
Alignment:
Q  235 taagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    |||||| ||||||||| ||||||| |||||||||||| || |||||| |||||| |||||| ||||||||||| ||||||||||    
T  46848483 taaggggtaatagtcactttggtccctgaatgtgtaatgagtagtcaaaatagttcctcaatgtatcaaaatttcaaaatagtc 46848400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 242 - 313
Target Start/End: Original strand, 51889757 - 51889828
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaa 313  Q
    |||||||||||||| ||||||||||||||| || ||||||||||||||  |||| |||||||||||||||||    
T  51889757 taatagtcattttgatctctgaatgtgtaaggagtagtcacaatagtctttcaatgtatcaaaattccaaaa 51889828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 318
Target Start/End: Complemental strand, 621969 - 621889
Alignment:
Q  236 aagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    |||| |||||||||| |||||||||||||||||||| || |||||| ||||||  ||||| ||||||||||| ||||||||||    
T  621969 aaggaataatagtcactttggtctctgaatgtgtaatgagtagtcataatagt--ctcaatgtatcaaaatttcaaaatagtc 621889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 43837083 - 43837148
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaatt 307  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||||||||| || ||| |||||||    
T  43837083 taatagtcattttagtcactgaatgtgtaacgaataatcacaatagtccctaaatgtaccaaaatt 43837148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 314
Target Start/End: Original strand, 30669357 - 30669429
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaat 314  Q
    |||||||||||||| || || ||||||||| || |||||||||||||  ||||| |||| |||||||||||||    
T  30669357 taatagtcattttgatccctaaatgtgtaaggagtagtcacaatagtatctcaatgtattaaaattccaaaat 30669429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 318
Target Start/End: Complemental strand, 53706057 - 53705982
Alignment:
Q  243 aatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    ||||||||||||||||| ||| |||||||| | ||| || ||||||||||||  ||||| ||||| ||||||||||    
T  53706057 aatagtcattttggtctttgattgtgtaacaagtagccaaaatagtccctcactgtatcgaaatttcaaaatagtc 53705982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 319
Target Start/End: Complemental strand, 21568644 - 21568562
Alignment:
Q  237 agggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtct 319  Q
    |||||||||||||| ||| ||| ||| |||||||| ||||||| ||||||||| | ||| ||||||||| |  ||||||||||    
T  21568644 agggataatagtcactttcgtccctgcatgtgtaatgaatagtgacaatagtctcccaatgtatcaaaaatttaaaatagtct 21568562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 305
Target Start/End: Original strand, 24255220 - 24255283
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaa 305  Q
    |||||||||||||  |||||||||||| ||||| | |||| |||||| |||||| |||||||||    
T  24255220 taatagtcattttactctctgaatgtgaaacgagtggtcataatagttcctcaatgtatcaaaa 24255283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 322
Target Start/End: Complemental strand, 40619299 - 40619216
Alignment:
Q  239 ggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    |||||||||| | |||| ||  ||||||||||| || |||||| | || |||||||| |||||||||||  |||||||||||||    
T  40619299 ggataatagttactttgatccttgaatgtgtaatgagtagtcatattaatccctcaatgtatcaaaattttaaaatagtctctg 40619216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 22235186 - 22235263
Alignment:
Q  240 gataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    ||||||||||||||| ||| || |||||||||  ||||| ||||||||||| | || |||| |||||| ||||||||||    
T  22235186 gataatagtcatttttgtc-ctaaatgtgtaataaatagccacaatagtccttgaatgtattaaaatttcaaaatagtc 22235263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 23567405 - 23567355
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccct 292  Q
    |||||||||||||| || ||||||||||||||| | | |||||||||||||    
T  23567405 taatagtcattttgatccctgaatgtgtaacgagtggccacaatagtccct 23567355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 312
Target Start/End: Complemental strand, 30669698 - 30669628
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaa 312  Q
    ||||||| |||||| ||| |||||||| ||||| |||||| ||||||  || || ||||||||||||||||    
T  30669698 taatagttattttgatctttgaatgtgcaacgagtagtcataatagtttctgaatgtatcaaaattccaaa 30669628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 41898129 - 41898079
Alignment:
Q  239 ggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtc 289  Q
    |||||||||| |||||||||  |||||||||||||| || |||||||||||    
T  41898129 ggataatagttattttggtccttgaatgtgtaacgagtaatcacaatagtc 41898079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 621610 - 621679
Alignment:
Q  249 cattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    ||||||||||||| ||| ||||| || ||||||||||||||| |  | | ||||||||| ||||||||||    
T  621610 cattttggtctctaaatttgtaatgagtagtcacaatagtcctttgatgaatcaaaatttcaaaatagtc 621679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 315
Target Start/End: Original strand, 21568297 - 21568374
Alignment:
Q  238 gggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaata 315  Q
    ||||||||||||| |||||||| | ||| ||||| || ||||||||||| || ||||| |||  |||||| |||||||    
T  21568297 gggataatagtcactttggtcttttaatatgtaatgagtagtcacaataatctctcaatgtacaaaaatttcaaaata 21568374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 317
Target Start/End: Original strand, 26483035 - 26483112
Alignment:
Q  240 gataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagt 317  Q
    |||||||||||||||||||  |  |||| |||||| ||| ||||||||||  | || |||||||||||| ||||||||    
T  26483035 gataatagtcattttggtccttagatgtataacgagtagacacaatagtcatttaatgtatcaaaattctaaaatagt 26483112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 284320 - 284396
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    |||||||||||||  ||| ||||||||||| || |||||||| ||||  || || |||||||||||| | |||||||    
T  284320 taatagtcatttttatctttgaatgtgtaaagagtagtcacactagtttctaaatgtatcaaaattctacaatagtc 284396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 14984760 - 14984716
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaata 286  Q
    ||||||||||||||||| ||||||||||||  | |||||||||||    
T  14984760 taatagtcattttggtccctgaatgtgtaagaagtagtcacaata 14984716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 27071207 - 27071247
Alignment:
Q  249 cattttggtctctgaatgtgtaacgaatagtcacaatagtc 289  Q
    |||||| |||| |||||||||||||||| ||||||||||||    
T  27071207 catttttgtctttgaatgtgtaacgaatcgtcacaatagtc 27071247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 18942730 - 18942802
Alignment:
Q  235 taagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaatt 307  Q
    |||||| ||||||||||||||||| |||||||||||| ||||||||| ||||||| ||||| |||||||||||    
T  18942730 taaggggtaatagtcattttggtccctgaatgtgtaaggaatagtcataatagtcactcaatgtatcaaaatt 18942802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 238 - 322
Target Start/End: Complemental strand, 32996612 - 32996528
Alignment:
Q  238 gggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    |||||||| ||||||||||||  ||||||| ||| ||||||| ||||||||||||||| | |||||||||| |||||||||||||    
T  32996612 gggataatggtcattttggtccttgaatgtctaatgaatagtgacaatagtccctcaatgcatcaaaattctaaaatagtctctg 32996528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 30840012 - 30839954
Alignment:
Q  237 agggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaa 295  Q
    |||||||||||||||||||||| |||||||| ||||||||||| ||||||||| |||||    
T  30840012 agggataatagtcattttggtccctgaatgtataacgaatagttacaatagtctctcaa 30839954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 322
Target Start/End: Original strand, 5358203 - 5358287
Alignment:
Q  238 gggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    ||||||||||||| |||  || || ||||||||| ||||||| |||||||||| |||| |||||||||||  |||||||||||||    
T  5358203 gggataatagtcactttcatccctaaatgtgtaatgaatagttacaatagtccttcaatgtatcaaaattttaaaatagtctctg 5358287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 322
Target Start/End: Complemental strand, 8062976 - 8062896
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    ||||||| |||||||||  |||||||||||||| ||||||||||||||  |||| |||| ||||||  |||||||| ||||    
T  8062976 taatagttattttggtccttgaatgtgtaacgagtagtcacaatagtctgtcaatgtattaaaattttaaaatagtatctg 8062896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 322
Target Start/End: Complemental strand, 20889520 - 20889444
Alignment:
Q  246 agtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    ||||||| | ||| ||||||||||||| | ||| |||||||||||||||| ||||||| ||| ||||||| ||||||    
T  20889520 agtcattgttgtccctgaatgtgtaacaagtagccacaatagtccctcaatgtatcaacatttcaaaataatctctg 20889444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 21401751 - 21401803
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctca 294  Q
    |||||||||||||||||||| |||||||||||| |||  ||||||||||||||    
T  21401751 taatagtcattttggtctctaaatgtgtaacgagtagctacaatagtccctca 21401803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 38838744 - 38838672
Alignment:
Q  250 attttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    ||||||||| ||||||||||||||| ||||||||||| ||  |||| |||| ||||||  |||||||||||||    
T  38838744 attttggtccctgaatgtgtaacgagtagtcacaatattctatcaatgtattaaaattttaaaatagtctctg 38838672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 11458871 - 11458946
Alignment:
Q  243 aatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    ||||||||||||  |||||||||||||||  ||||  ||||||||||| |||| ||| |||| |||||||||||||    
T  11458871 aatagtcattttcatctctgaatgtgtaataaataaccacaatagtccttcaatgtagcaaagttccaaaatagtc 11458946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 318
Target Start/End: Complemental strand, 12927894 - 12927837
Alignment:
Q  261 tgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    |||||||||| | | ||||||||||||||| || | ||||||||||||||||||||||    
T  12927894 tgaatgtgtagcaagtagtcacaatagtccttcgatgtatcaaaattccaaaatagtc 12927837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 19303664 - 19303600
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaatt 307  Q
    |||||||||||||||||||||||||| ||| || | | |||||||| ||||||| |||||||||||    
T  19303664 taatagtcattttggtctctgaatgtataaggagtggccacaatag-ccctcaatgtatcaaaatt 19303600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 322
Target Start/End: Original strand, 14669237 - 14669313
Alignment:
Q  246 agtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    |||||||||||||  |||||||||||||| ||||||||| | ||||||||   ||| ||||  ||||||||||||||    
T  14669237 agtcattttggtccttgaatgtgtaacgagtagtcacaacaatccctcaattaatcgaaatatcaaaatagtctctg 14669313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 25993793 - 25993860
Alignment:
Q  238 gggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaat 306  Q
    ||||||||||||||||| |||| ||| |||||||||||||  |||||||||| |||||  |||||||||    
T  25993793 gggataatagtcattttagtct-tgagtgtgtaacgaataaccacaatagtctctcaatatatcaaaat 25993860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 322
Target Start/End: Complemental strand, 40355176 - 40355096
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    |||||||||||||||||| |||||||||||||| ||||   |||||||  ||||| || | |||||  |||||||||||||    
T  40355176 taatagtcattttggtctttgaatgtgtaacgagtagttgtaatagtcgttcaacataccgaaatttgaaaatagtctctg 40355096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 321
Target Start/End: Original strand, 34703629 - 34703707
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctct 321  Q
    |||||||||||||| ||  | ||||| |||||| ||||||||||||||| |||| ||||| |||||  ||||||||||||    
T  34703629 taatagtcattttgatccataaatgtataacgagtagtcacaatagtccatcaatgtatc-aaattttaaaatagtctct 34703707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 315
Target Start/End: Original strand, 25688974 - 25689028
Alignment:
Q  261 tgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaata 315  Q
    ||||||||||| ||||| ||||||||||| ||||| |||| ||||||| ||||||    
T  25688974 tgaatgtgtaatgaataatcacaatagtctctcaatgtattaaaattctaaaata 25689028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 12849805 - 12849744
Alignment:
Q  261 tgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    |||||||| || || ||||||||||||||  | || ||||||||||| ||||||||||||||    
T  12849805 tgaatgtgcaatgagtagtcacaatagtcttttaatgtatcaaaattacaaaatagtctctg 12849744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 23190963 - 23191028
Alignment:
Q  240 gataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaa 305  Q
    |||||||||||||||  ||||||||||| |||||| |||||| |||||| | |||| |||| ||||    
T  23190963 gataatagtcatttttatctctgaatgtataacgagtagtcataatagttcgtcaatgtataaaaa 23191028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 307
Target Start/End: Original strand, 29196773 - 29196818
Alignment:
Q  262 gaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaatt 307  Q
    |||||||||||||||||||||||||||   |||| |||||||||||    
T  29196773 gaatgtgtaacgaatagtcacaatagtttttcaatgtatcaaaatt 29196818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 45540101 - 45540036
Alignment:
Q  240 gataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaa 305  Q
    ||||||| ||||||||||| || ||||| |||||| | | ||||||||||||| || |||||||||    
T  45540101 gataataatcattttggtccctaaatgtataacgagttgacacaatagtccctaaatgtatcaaaa 45540036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 1247507 - 1247575
Alignment:
Q  251 ttttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtct 319  Q
    |||||||| |||||| |||||||| |||||||||||||  || || |||| ||||||  ||||||||||    
T  1247507 ttttggtccctgaatatgtaacgagtagtcacaatagtttcttaatgtattaaaattttaaaatagtct 1247575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 319
Target Start/End: Original strand, 39791827 - 39791902
Alignment:
Q  243 aatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtct 319  Q
    |||||||||||| ||| |||||||||||||   ||  |||||||||| ||||| ||||  |||||||||||||||||    
T  39791827 aatagtcattttcgtc-ctgaatgtgtaacaggtaaccacaatagtctctcaatgtattgaaattccaaaatagtct 39791902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 318
Target Start/End: Complemental strand, 6551 - 6471
Alignment:
Q  238 gggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    ||||||||||||||||| ||  |||||||||||| ||||||||| |||||||| |||| | ||||||||| ||||||||||    
T  6551 gggataatagtcattttagtacctgaatgtgtaatgaatagtcataatagtccttcaatgaatcaaaatttcaaaatagtc 6471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 6196 - 6272
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    |||||||||||| ||||||| |||||| ||||| ||||| ||||||||| |||| |||||||||||  |||||||||    
T  6196 taatagtcatttcggtctctcaatgtgcaacgagtagtcccaatagtccatcaatgtatcaaaattttaaaatagtc 6272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 10219537 - 10219612
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagt 317  Q
    ||||||||||||||||| ||||||||||||||| ||| ||||||||||||| || || || ||||| |||||||||    
T  10219537 taatagtcattttggtccctgaatgtgtaacgagtagccacaatagtcccttaatgtgtcgaaatttcaaaatagt 10219612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 318
Target Start/End: Complemental strand, 516098 - 516022
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    ||||||||||||||||| ||||||||||||||| ||||||||| |||  ||  | ||||| ||||||||||||||||    
T  516098 taatagtcattttggtccctgaatgtgtaacgagtagtcacaacagtaacttgatgtatcgaaattccaaaatagtc 516022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 318
Target Start/End: Complemental strand, 9436850 - 9436770
Alignment:
Q  238 gggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    ||||| ||||||||||| ||||||||||  ||||||| |||||||||||||| ||||| | ||| |||||  |||||||||    
T  9436850 gggatgatagtcattttagtctctgaataggtaacgagtagtcacaatagtctctcaatggatcgaaattttaaaatagtc 9436770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 322
Target Start/End: Complemental strand, 10067827 - 10067747
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    ||||||||||||| |||| |||||||||||| | ||  |||||||||| ||||| ||||| |||||  |||||||||||||    
T  10067827 taatagtcattttagtctttgaatgtgtaacaagtaaccacaatagtctctcaatgtatcgaaattttaaaatagtctctg 10067747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 7792013 - 7792087
Alignment:
Q  243 aatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagt 317  Q
    ||||||||||||| |||||||||||||||    | || ||||||||||||||| |||||||||||  ||||||||    
T  7792013 aatagtcattttgatctctgaatgtgtaagatgtcgtgacaatagtccctcaatgtatcaaaatttgaaaatagt 7792087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 319
Target Start/End: Complemental strand, 33807020 - 33806939
Alignment:
Q  238 gggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtct 319  Q
    ||||||||||||||| ||||  |||||||| ||| || || || |||||||| ||||| |||||||||||| ||||| ||||    
T  33807020 gggataatagtcattgtggttcctgaatgtataaagagtactcgcaatagtctctcaatgtatcaaaattcaaaaattgtct 33806939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 6524844 - 6524920
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    |||||| ||||||||||  |||||||||||  | |||||| ||||||| ||||| |||| ||||||| |||||||||    
T  6524844 taatagccattttggtccatgaatgtgtaataagtagtcataatagtctctcaatgtattaaaattctaaaatagtc 6524920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 318
Target Start/End: Complemental strand, 6699763 - 6699687
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    ||||||||||||||||| || ||||| |||| | ||| || |||||||||||||  ||||||| || ||||||||||    
T  6699763 taatagtcattttggtccctaaatgtataacaagtaggcataatagtccctcaatatatcaaattttcaaaatagtc 6699687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 10067454 - 10067530
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    |||||||||||||  ||||||  ||| ||| || ||||||||| | |||||||| |||||||||||| |||||||||    
T  10067454 taatagtcattttaatctctgggtgtataaggagtagtcacaacaatccctcaatgtatcaaaattctaaaatagtc 10067530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 322
Target Start/End: Complemental strand, 19264827 - 19264748
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    ||||||||||||  |||  |||||||||||||| |||||||||||||| || || ||||| |||||  |||||||||||||    
T  19264827 taatagtcatttacgtccttgaatgtgtaacgagtagtcacaatagtctct-aatgtatcgaaattttaaaatagtctctg 19264748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 31141910 - 31141993
Alignment:
Q  235 taagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    |||| ||||||||| |||||| ||| |||||||||  ||| ||||||||||||||| |||| ||||| || || ||||| ||||    
T  31141910 taagagataatagttattttgatctttgaatgtgtgccgagtagtcacaatagtccatcaatgtatcgaactttcaaaaaagtc 31141993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 318
Target Start/End: Original strand, 21020837 - 21020927
Alignment:
Q  228 ttattattaagggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    ||||| ||||||| ||||||||||||||||| |||||| | |||||| || | | |||||||  || | |||||||||||  |||||||||    
T  21020837 ttatttttaaggggtaatagtcattttggtccctgaatatataacgagtaattataatagtctttcgatgtatcaaaattttaaaatagtc 21020927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 312
Target Start/End: Complemental strand, 24285353 - 24285283
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaa 312  Q
    ||||| ||||||||||| || |||||||||| | |||| | | ||| ||||||||||||||||||| ||||    
T  24285353 taataatcattttggtccctaaatgtgtaacaagtagttagagtagaccctcaacgtatcaaaattgcaaa 24285283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 315
Target Start/End: Original strand, 34937448 - 34937502
Alignment:
Q  261 tgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaata 315  Q
    |||||||||||||| ||||||||||||| | |||| ||||| ||||| |||||||    
T  34937448 tgaatgtgtaacgagtagtcacaatagttcttcaatgtatccaaatttcaaaata 34937502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 318
Target Start/End: Original strand, 26368921 - 26369002
Alignment:
Q  237 agggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    |||| |||||||||||||| ||  | |||||| ||||| ||| ||| ||||||| |||| | ||||||||| ||||||||||    
T  26368921 aggggtaatagtcattttgatccttaaatgtggaacgagtagccacgatagtccttcaatgcatcaaaattgcaaaatagtc 26369002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 33806650 - 33806726
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    ||||||| ||||| |||  ||||||||||| || ||||||||||| ||| | || ||||| |||||| |||||||||    
T  33806650 taatagttattttagtccatgaatgtgtaaggagtagtcacaataatcctttaatgtatcgaaattctaaaatagtc 33806726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 242 - 315
Target Start/End: Complemental strand, 20167698 - 20167625
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaata 315  Q
    |||||||||||||||||| | |||||||||| | |||||||||||||| ||||| | ||||||||| |||||||    
T  20167698 taatagtcattttggtctttaaatgtgtaacaagtagtcacaatagtcactcaatgcatcaaaattgcaaaata 20167625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 313
Target Start/End: Original strand, 20360299 - 20360366
Alignment:
Q  246 agtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaa 313  Q
    |||||||||||||||| ||||| |||||| |||||||||||||| ||||| | ||||||||| |||||    
T  20360299 agtcattttggtctctaaatgtctaacgagtagtcacaatagtcactcaatgcatcaaaattgcaaaa 20360366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 322
Target Start/End: Complemental strand, 7165857 - 7165772
Alignment:
Q  237 agggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    |||||||| ||| |||||| || || |||||||||||| ||||||||||||||  |||| |||| ||||||  |||||||||||||    
T  7165857 agggataacagttattttgatccctaaatgtgtaacgagtagtcacaatagtctttcaatgtattaaaattttaaaatagtctctg 7165772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 243 - 319
Target Start/End: Original strand, 1517541 - 1517617
Alignment:
Q  243 aatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtct 319  Q
    ||||||||||||| | |||| |||||||||||||||| || ||||||| |||| ||||| |||||  ||||||||||    
T  1517541 aatagtcattttgatatctggatgtgtaacgaatagttacgatagtccttcaatgtatcgaaattttaaaatagtct 1517617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 314
Target Start/End: Complemental strand, 39273457 - 39273385
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaat 314  Q
    |||||| ||||||||||||||||||||||| || ||| ||||||||||||| || ||||  ||||| ||||||    
T  39273457 taatagccattttggtctctgaatgtgtaatgagtagccacaatagtccctaaatgtattgaaatttcaaaat 39273385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 40124264 - 40124344
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    ||||||||| |||||||  |||||||||||||| ||||||||||||||| | || ||||| |||||  ||||| |||||||    
T  40124264 taatagtcactttggtccttgaatgtgtaacgagtagtcacaatagtccattaatgtatcgaaattttaaaatggtctctg 40124344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 23359344 - 23359396
Alignment:
Q  243 aatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaa 295  Q
    |||||||||||| ||| |  |||||||||||||||||||||||||||| ||||    
T  23359344 aatagtcatttttgtcccgaaatgtgtaacgaatagtcacaatagtccttcaa 23359396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 21603786 - 21603707
Alignment:
Q  239 ggataatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    |||||| ||||| |||||||  ||| ||| || | | ||||||||||||||| || ||||||||||||| ||||||||||    
T  21603786 ggataacagtcactttggtccttgagtgtatagcaagtagtcacaatagtccttcgacgtatcaaaatttcaaaatagtc 21603707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 321
Target Start/End: Original strand, 34883934 - 34883977
Alignment:
Q  278 gtcacaatagtccctcaacgtatcaaaattccaaaatagtctct 321  Q
    |||||||||||||||||| |||||||||||  ||||||||||||    
T  34883934 gtcacaatagtccctcaatgtatcaaaattttaaaatagtctct 34883977  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 317
Target Start/End: Complemental strand, 41746606 - 41746539
Alignment:
Q  250 attttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagt 317  Q
    ||||||||||||| ||||||||  |||||||| ||||||| ||||| ||||  |||||| ||||||||    
T  41746606 attttggtctctggatgtgtaagaaatagtcataatagtctctcaatgtatttaaattctaaaatagt 41746539  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 318
Target Start/End: Original strand, 5708989 - 5709055
Alignment:
Q  252 tttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    |||||||  ||||||||||| || || |||||||||||| |||| ||||||  ||||||||||||||    
T  5708989 tttggtccttgaatgtgtaatgattaatcacaatagtccttcaatgtatcaggattccaaaatagtc 5709055  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 318
Target Start/End: Complemental strand, 9471893 - 9471823
Alignment:
Q  248 tcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtc 318  Q
    ||||||||||||||||||||||||  |||||||| ||||||   | || |||| ||||||| |||||||||    
T  9471893 tcattttggtctctgaatgtgtaataaatagtcataatagttttttaatgtattaaaattctaaaatagtc 9471823  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 322
Target Start/End: Complemental strand, 18903252 - 18903195
Alignment:
Q  265 tgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    |||||||||| ||||||||||||||  |||| ||||| |||||| |||||||| ||||    
T  18903252 tgtgtaacgagtagtcacaatagtcattcaatgtatcgaaattctaaaatagtttctg 18903195  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 1517899 - 1517831
Alignment:
Q  251 ttttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtct 319  Q
    ||||| ||| ||||||||||||||||||  |  |||||| ||||| ||||| |||||| ||||||||||    
T  1517899 ttttgatctttgaatgtgtaacgaatagcaatcatagtctctcaatgtatcgaaattctaaaatagtct 1517831  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 322
Target Start/End: Complemental strand, 6788592 - 6788512
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    |||||||||||||  ||  | |||||||||| |||||||| |||||||  |||| |||||||||||  |||||||| ||||    
T  6788592 taatagtcattttcatccttaaatgtgtaacaaatagtcataatagtcattcaatgtatcaaaattttaaaatagtttctg 6788512  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 322
Target Start/End: Complemental strand, 15301692 - 15301612
Alignment:
Q  242 taatagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    ||||||| |||||| ||  | |||||||||||| || ||||||| ||| ||||| ||||| ||||| ||||||| ||||||    
T  15301692 taatagttattttgatccttaaatgtgtaacgactaatcacaatcgtctctcaatgtatcgaaatttcaaaataatctctg 15301612  T

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Target: scaffold0086 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 315
Target Start/End: Complemental strand, 21959 - 21890
Alignment:
Q  246 agtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaata 315  Q
    |||||||||||||||||||||| |||  | ||||||||||||||  ||||  ||||||||||| ||||||    
T  21959 agtcattttggtctctgaatgtttaagaagtagtcacaatagtctttcaatatatcaaaattcaaaaata 21890  T

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Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 81672 - 81635
Alignment:
Q  239 ggataatagtcattttggtctctgaatgtgtaacgaat 276  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  81672 ggataatagtcattttggtctttgaatgtgtaacgaat 81635  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 89408 - 89359
Alignment:
Q  244 atagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctc 293  Q
    |||||||||||||||||| |||||| || |||||| ||||||||||||||    
T  89408 atagtcattttggtctctaaatgtgcaatgaatagacacaatagtccctc 89359  T

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Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 322
Target Start/End: Complemental strand, 329142 - 329062
Alignment:
Q  243 aatagtcattttggtctct-gaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatagtctctg 322  Q
    ||||||||||||| ||||| |||||||||||||||| | | |||| || || || |||||||||||  |||||||| ||||    
T  329142 aatagtcattttgatctcttgaatgtgtaacgaatatttaaaataatcacttaatgtatcaaaattataaaatagtttctg 329062  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 348964 - 349003
Alignment:
Q  276 tagtcacaatagtccctcaacgtatcaaaattccaaaata 315  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  348964 tagtcacaatagtccttcgacgtatcaaaattccaaaata 349003  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 29214 - 29255
Alignment:
Q  276 tagtcacaatagtccctcaacgtatcaaaattccaaaatagt 317  Q
    ||||||||||||||| || ||||||||||||| |||||||||    
T  29214 tagtcacaatagtccttcgacgtatcaaaatttcaaaatagt 29255  T

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Target: scaffold0252 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 316
Target Start/End: Complemental strand, 17373 - 17301
Alignment:
Q  244 atagtcattttggtctctgaatgtgtaacgaatagtcacaatagtccctcaacgtatcaaaattccaaaatag 316  Q
    ||||||||||||||| ||||||||| ||| | ||||  |||||||  ||||| |||| ||||||| |||||||    
T  17373 atagtcattttggtccctgaatgtgcaacaagtagtagcaatagtttctcaatgtattaaaattctaaaatag 17301  T

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