View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3106_low_16 (Length: 310)
Name: NF3106_low_16
Description: NF3106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3106_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 8553702 - 8553425
Alignment:
| Q |
18 |
ataatgatagtatgctacatatatataatgaatttagggtatgtgttaaggttatatatatt-aatgaatgtgaaaattaatgtagttagtttgtttctg |
116 |
Q |
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| T |
8553702 |
ataataatagtatgctacatatatataatgaatttagggtatgtgttaaggttatatatatttaatgaatgtgaaaattaatgtagttagtttgtttctg |
8553603 |
T |
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| Q |
117 |
tttttagtcaagagttgttcctaacttgacaagtgtcatgtaggcaacttaattggactgacaatgactaattattagtaataattattgttatgttatt |
216 |
Q |
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| T |
8553602 |
tttttagtcaagagttgttcctaacttgacaagtgtcatgtaggcaacttaattggactgacaatgactgattattagtaataattattgttatgttatt |
8553503 |
T |
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| Q |
217 |
tttgttgtccatttccctacaaacattctttgcattaatttgctaattcaaatgattggctttacaaaaagatactaa |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8553502 |
tttgttgtccatttccctacaaacattctttgcattaatttgctaattcaaatgattggctttacaaaaagatactaa |
8553425 |
T |
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