View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3106_low_19 (Length: 277)
Name: NF3106_low_19
Description: NF3106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3106_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 5 - 265
Target Start/End: Original strand, 4961475 - 4961737
Alignment:
| Q |
5 |
aaaaacaatgtcaattatactttgtacaagtgaaacaagtcttacatcatttgcaagctagtttgt---accattaaattaataaatctcatcataaatt |
101 |
Q |
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| T |
4961475 |
aaaaacaatgtcaattatactttgtacaagtgaaacaagtcttacatcatttgta-gctagtttgtcgtaccattaaattaataaatctcatcataaatt |
4961573 |
T |
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| Q |
102 |
aaacaagatataaggttgttcccttatatatacatagtatttttcaattgaggaaggggaaattttgctagtaacagttgcattaagggggtctgtttag |
201 |
Q |
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| T |
4961574 |
aaacaagatataaggttgttcccttatatatacatagtatttttcaattgaggaaggggaaattttgctagtaacagttgcattaagggggtctgtttag |
4961673 |
T |
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| Q |
202 |
gtgatatttgaactttattccctcaaattaggaagtgaaactctatcaactgagccgacatatt |
265 |
Q |
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| T |
4961674 |
gtgatatttgaactttatttcctgaaattaggaagtgaaactctatcaactgagctgacatatt |
4961737 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 49457904 - 49457845
Alignment:
| Q |
37 |
aaacaagtcttacatcatttgcaagctagtttgtaccattaaattaataaatctcatcat |
96 |
Q |
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| T |
49457904 |
aaacaaatcttacatcataagcaagttggtttttaccattaaattaataaatcttatcat |
49457845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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