View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3106_low_20 (Length: 258)
Name: NF3106_low_20
Description: NF3106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3106_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 1217030 - 1217204
Alignment:
| Q |
18 |
catgtgatctcaagtcatgcaagatttgaacttcaaattttccatttatcttattttctgcttatgtgtatatcactagagaaattctcatgtgttttaa |
117 |
Q |
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| T |
1217030 |
catgtgatctcaagtcgtgcaagatttgaacttcaaattttccatttatcttattttctgcttatgtgtatatcactagagaaattctcatgtgttttaa |
1217129 |
T |
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| Q |
118 |
agctcaaaaactcacctgaagaagatgccgttaagttgcatcctggatctcgtgacgctcatacgctgtaagttc |
192 |
Q |
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| T |
1217130 |
agctcaaaaactcacctgaagaagatgccgttaagttgcatcctggatctcgtgacgctcatacgctgcaagttc |
1217204 |
T |
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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 243
Target Start/End: Original strand, 1217225 - 1217255
Alignment:
| Q |
213 |
aatctttcaacattatgctggttgaattttt |
243 |
Q |
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| T |
1217225 |
aatctttcaacattatgctggttgaattttt |
1217255 |
T |
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