View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3106_low_21 (Length: 250)
Name: NF3106_low_21
Description: NF3106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3106_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 33223547 - 33223781
Alignment:
| Q |
1 |
tgttgtagatacttgttgaaacatttgaagcaatgtcatagaagggtgttcaaaaggacccttcattgaaacatccaaaccattattgtttaacacagta |
100 |
Q |
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| T |
33223547 |
tgttgtagatacttgttgaaacatttgaagcaatgtcatagaagggtgttcaaaaggacccttcattgaaacatccaaaccattattgtttaatacagta |
33223646 |
T |
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| Q |
101 |
ataactacttccgttgaaagccagacatcaacnnnnnnnngaaaaaatcccggcatcattat-nnnnnnncaatctctacaagtagcataatagtgtgct |
199 |
Q |
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| T |
33223647 |
ataactacttccgttgaaagcccgacatcaacttttttttgaaaaaatcccggcatcattataaaaaaaacaatctgtacaagtagcataatagtgtgct |
33223746 |
T |
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| Q |
200 |
actgtcactgcaccagacttttcaactcctctctt |
234 |
Q |
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| T |
33223747 |
actgtcactgcaccagacttttcaactcctctctt |
33223781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 33226664 - 33226720
Alignment:
| Q |
183 |
tagcataatagtgtgctactgtcactgcaccagacttttcaactcctctctttctct |
239 |
Q |
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| T |
33226664 |
tagcataatagtgtgctactctcactgcaccagacttttcaactcctctctttctct |
33226720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 33226463 - 33226543
Alignment:
| Q |
1 |
tgttgtagatacttgttgaaacatttgaagcaa-----tgtcatagaagggtgttcaaaaggacccttcattgaaacatcc |
76 |
Q |
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| T |
33226463 |
tgttgtagatacttgttgaaacatttgaagcaatttcttttcttagaagggtgttcagaaggacccttcattgaaacatcc |
33226543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 33246003 - 33245920
Alignment:
| Q |
1 |
tgttgtagatacttgttgaaacatttgaagcaatgtcatagaagggtgttcaaaaggacccttcattgaaacatccaaaccatt |
84 |
Q |
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|||| |||||||||||| |||||||||||| ||| || ||||||||||||| ||||| |||||||||||||||||||| |||| |
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| T |
33246003 |
tgttctagatacttgttcaaacatttgaaggaataccaaagaagggtgttcataaggatccttcattgaaacatccaaatcatt |
33245920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 112
Target Start/End: Original strand, 33226558 - 33226593
Alignment:
| Q |
77 |
aaaccattattgtttaacacagtaataactacttcc |
112 |
Q |
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| T |
33226558 |
aaaccattattgtttaccacagtaataactacttcc |
33226593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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