View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3106_low_23 (Length: 244)
Name: NF3106_low_23
Description: NF3106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3106_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 42007447 - 42007652
Alignment:
| Q |
14 |
cactaatgatagtgatacaatattgtttagatttttaaacctaggatttattattatccttttagggtttatgattatggttttgttcattgttaataat |
113 |
Q |
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| T |
42007447 |
cactaatgatagtgatacaatattgtttagatttttaaacctaggatttgttattatccttttagggtttatgattatggttttgttcattgttaat-at |
42007545 |
T |
|
| Q |
114 |
gtataattaagcttcattatgattgnnnnnnnncttgacatcaaattttaaatgagatatatgaaatatgtgaaagttttgaatttgatattatactgtg |
213 |
Q |
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| T |
42007546 |
gtataattaagcttcattatgattgttttttttcttgacatcaaattttaaatgagatatatgaaatatgtgaaagttttgaatttgatattatactgtg |
42007645 |
T |
|
| Q |
214 |
ctttatt |
220 |
Q |
| |
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||||||| |
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| T |
42007646 |
ctttatt |
42007652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 1242796 - 1243001
Alignment:
| Q |
14 |
cactaatgatagtgatacaatattgtttagatttttaaacctaggatttattattatccttttagggtttatgattatggttttgttcattgttaataat |
113 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1242796 |
cactaatgatagtgataaaatactgtttagattttaaaacctaggatttgttattatccttttagggtttatgattatggttttgttcattgttaataat |
1242895 |
T |
|
| Q |
114 |
gtataattaagcttcattatgattgnnnnnnnncttgacatcaaattttaaatgagatatatgaaatatgtgaaagttttgaatttgatattatactgtg |
213 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1242896 |
gtataattaagcttcattatgattg-tttttttcttgatatcaaattttaaatgagatatatgaaatatgtgaaagttttgaatttgatattatactgtg |
1242994 |
T |
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| Q |
214 |
ctttatt |
220 |
Q |
| |
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||||||| |
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| T |
1242995 |
ctttatt |
1243001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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