View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3106_low_25 (Length: 238)
Name: NF3106_low_25
Description: NF3106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3106_low_25 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 64 - 238
Target Start/End: Complemental strand, 19789527 - 19789353
Alignment:
| Q |
64 |
gcaataacttctctgttttcctagataactgtatcaattgcagcagcaaattgatttcattagaaataagaaactctcaattgcagcctttgctgtgatt |
163 |
Q |
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| T |
19789527 |
gcaataacttctctgttttcctagataactgtatcaattgcagcagcaaattgatttcattagaaataagaaactctcaattgcagcctttgctgtgatt |
19789428 |
T |
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| Q |
164 |
ctttagttacctgggttatggaatcgtacttgttatcgagtgcttaatattgagtcaaaactacacatctaaaat |
238 |
Q |
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| T |
19789427 |
ctttagttacctgggttatggaatcgtacttgttatcgagtgcttaatattgagtcaaaactacacatctaaaat |
19789353 |
T |
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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 19789743 - 19789689
Alignment:
| Q |
13 |
catcagcagtttttcagccaagtcattgtgtatttttcatgttctcaattggcaa |
67 |
Q |
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| T |
19789743 |
catcagcagtttttcagccaagtcattgtgtatttttcatgttctcaattggcaa |
19789689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 64 - 228
Target Start/End: Original strand, 39115521 - 39115685
Alignment:
| Q |
64 |
gcaataacttctctgttttcctagataactgtatcaattgcagcagcaaattgatttcattagaaataagaaactctcaattgcagcctttgctgtgatt |
163 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39115521 |
gcaataacttctctgttttcctagataactgtatcaattgcagcagctacttgatttcattagaaataagaaactctcaattgcagcctttgctgtgatt |
39115620 |
T |
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| Q |
164 |
ctttagttacctgggttatggaatcgtacttgttatcgagtgcttaatattgagtcaaaactaca |
228 |
Q |
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| T |
39115621 |
ctttagttacttgggttatggaatcgtacttgttatcgagtgcttaatattgagtcaaaactaca |
39115685 |
T |
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