View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3106_low_29 (Length: 220)
Name: NF3106_low_29
Description: NF3106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3106_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 4334212 - 4334102
Alignment:
| Q |
18 |
aatttgaaactaaagttagggtaaaaaattgaaatactatagtgtattcagaattaatttgatgattctatatttgtttatcactcctctaaaagtgaat |
117 |
Q |
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| T |
4334212 |
aatttgaaactaaagttagggtaaaaaattgaaatactatagtgtattcagaattaatttggtgattctatatttgtttatcactcctctaaaagtgaat |
4334113 |
T |
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| Q |
118 |
ccaagtatgca |
128 |
Q |
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| T |
4334112 |
ccaagtatgca |
4334102 |
T |
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Target: chr8; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 122 - 202
Target Start/End: Original strand, 4334577 - 4334657
Alignment:
| Q |
122 |
gtatgcatctcgtgtaggtacttttcaaaaagtactattcttagataattttgttgctaaaaagagtaatgctgaaagtaa |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4334577 |
gtatgcatctcgtgtaggtacttttcaaaaagtactattcttagataattttgttgctaaaaagagtaatgctcaaagtaa |
4334657 |
T |
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