View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3106_low_3 (Length: 525)

Name: NF3106_low_3
Description: NF3106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3106_low_3
NF3106_low_3
[»] chr4 (39 HSPs)
chr4 (9-503)||(1792900-1793394)
chr4 (9-122)||(43433727-43433852)
chr4 (9-119)||(1211738-1211860)
chr4 (15-83)||(26037836-26037904)
chr4 (15-83)||(50286831-50286899)
chr4 (9-83)||(436089-436163)
chr4 (9-83)||(31960162-31960236)
chr4 (9-87)||(39708314-39708392)
chr4 (9-83)||(46583172-46583246)
chr4 (9-80)||(53707657-53707728)
chr4 (9-83)||(23906649-23906723)
chr4 (9-87)||(27450521-27450599)
chr4 (9-83)||(33227069-33227143)
chr4 (9-69)||(12494624-12494684)
chr4 (9-84)||(45205196-45205271)
chr4 (17-83)||(4440716-4440781)
chr4 (9-69)||(33191196-33191256)
chr4 (9-81)||(56375152-56375224)
chr4 (9-68)||(16002802-16002861)
chr4 (9-84)||(41009698-41009773)
chr4 (9-84)||(47265550-47265625)
chr4 (17-83)||(52569871-52569937)
chr4 (9-73)||(39100881-39100945)
chr4 (88-119)||(436041-436072)
chr4 (88-119)||(1777454-1777485)
chr4 (9-84)||(7092567-7092642)
chr4 (88-119)||(23906740-23906771)
chr4 (88-119)||(31960253-31960284)
chr4 (88-119)||(33227021-33227052)
chr4 (88-119)||(48174532-48174563)
chr4 (88-119)||(48622966-48622997)
chr4 (9-83)||(48174441-48174515)
chr4 (86-116)||(50286786-50286816)
chr4 (85-119)||(52569951-52569985)
chr4 (23-89)||(55578885-55578951)
chr4 (15-60)||(27983083-27983128)
chr4 (9-58)||(48622889-48622938)
chr4 (91-119)||(39708270-39708298)
chr4 (91-119)||(53707606-53707634)
[»] chr7 (29 HSPs)
chr7 (9-87)||(7272895-7272973)
chr7 (9-83)||(33072814-33072888)
chr7 (9-83)||(31005083-31005157)
chr7 (9-83)||(33350154-33350228)
chr7 (9-83)||(35906549-35906623)
chr7 (9-83)||(49029136-49029210)
chr7 (9-119)||(11593772-11593894)
chr7 (9-119)||(36651806-36651928)
chr7 (9-86)||(38606862-38606939)
chr7 (9-83)||(12841623-12841697)
chr7 (9-83)||(34869280-34869354)
chr7 (9-86)||(43281533-43281610)
chr7 (15-83)||(39906729-39906797)
chr7 (17-84)||(15681216-15681283)
chr7 (9-87)||(32630451-32630529)
chr7 (9-119)||(36869637-36869759)
chr7 (9-61)||(37617826-37617878)
chr7 (9-84)||(7189581-7189656)
chr7 (88-119)||(31005035-31005066)
chr7 (88-119)||(34869232-34869263)
chr7 (88-119)||(35906640-35906671)
chr7 (88-119)||(39906814-39906845)
chr7 (32-83)||(46356222-46356273)
chr7 (85-119)||(23404230-23404264)
chr7 (85-119)||(33072766-33072800)
chr7 (85-119)||(38606817-38606851)
chr7 (88-118)||(46356290-46356320)
chr7 (94-122)||(13859451-13859479)
chr7 (88-120)||(32630406-32630438)
[»] chr3 (17 HSPs)
chr3 (9-84)||(38849953-38850028)
chr3 (15-120)||(3186580-3186697)
chr3 (9-85)||(25191237-25191313)
chr3 (9-83)||(33272376-33272450)
chr3 (9-83)||(51448057-51448131)
chr3 (9-83)||(52138660-52138734)
chr3 (9-83)||(54278880-54278954)
chr3 (9-86)||(5168685-5168762)
chr3 (9-66)||(26490194-26490251)
chr3 (9-85)||(48953744-48953819)
chr3 (88-119)||(28245249-28245280)
chr3 (9-84)||(43695113-43695188)
chr3 (88-119)||(47542150-47542181)
chr3 (88-119)||(52138612-52138643)
chr3 (9-83)||(28245297-28245371)
chr3 (9-83)||(47542060-47542133)
chr3 (17-69)||(49503915-49503967)
[»] chr8 (17 HSPs)
chr8 (15-89)||(18125029-18125103)
chr8 (9-119)||(36544964-36545081)
chr8 (9-84)||(39946716-39946791)
chr8 (9-87)||(42854352-42854430)
chr8 (10-83)||(36565590-36565663)
chr8 (9-85)||(15215619-15215695)
chr8 (9-84)||(25288761-25288836)
chr8 (9-84)||(25300096-25300171)
chr8 (9-80)||(37077628-37077699)
chr8 (26-83)||(36395318-36395375)
chr8 (15-86)||(18752227-18752298)
chr8 (9-83)||(2796415-2796489)
chr8 (9-83)||(12492190-12492264)
chr8 (15-67)||(8879794-8879846)
chr8 (88-119)||(36395392-36395423)
chr8 (88-119)||(36565680-36565711)
chr8 (85-119)||(4032930-4032964)
[»] chr1 (27 HSPs)
chr1 (9-87)||(32083093-32083171)
chr1 (9-119)||(30202478-30202600)
chr1 (9-83)||(1210605-1210679)
chr1 (9-83)||(43240729-43240803)
chr1 (9-78)||(8391637-8391706)
chr1 (9-86)||(15085791-15085868)
chr1 (16-78)||(3192071-3192133)
chr1 (16-78)||(3200889-3200951)
chr1 (16-78)||(3209726-3209788)
chr1 (9-83)||(9592594-9592668)
chr1 (9-83)||(51441113-51441187)
chr1 (9-86)||(696126-696203)
chr1 (10-83)||(22089954-22090027)
chr1 (9-81)||(34792697-34792768)
chr1 (9-83)||(49347741-49347815)
chr1 (24-83)||(51601918-51601977)
chr1 (9-66)||(32231302-32231359)
chr1 (87-119)||(9592546-9592578)
chr1 (88-119)||(1210557-1210588)
chr1 (88-119)||(22089906-22089937)
chr1 (88-119)||(43240820-43240851)
chr1 (9-48)||(46226630-46226669)
chr1 (88-119)||(51441204-51441235)
chr1 (85-119)||(8671732-8671766)
chr1 (17-59)||(8671804-8671846)
chr1 (10-84)||(18469429-18469503)
chr1 (32-86)||(37463238-37463292)
[»] chr2 (24 HSPs)
chr2 (10-119)||(2610340-2610461)
chr2 (9-118)||(3865885-3866006)
chr2 (9-118)||(36183264-36183385)
chr2 (9-84)||(24583954-24584029)
chr2 (9-86)||(11992454-11992531)
chr2 (9-86)||(41197576-41197653)
chr2 (9-86)||(41763389-41763466)
chr2 (15-83)||(451976-452044)
chr2 (9-83)||(4807452-4807526)
chr2 (9-83)||(8180640-8180714)
chr2 (9-84)||(37281966-37282041)
chr2 (9-87)||(23997473-23997551)
chr2 (30-87)||(32443470-32443527)
chr2 (9-86)||(38429741-38429818)
chr2 (9-59)||(16097338-16097388)
chr2 (88-119)||(452061-452092)
chr2 (88-119)||(8180592-8180623)
chr2 (9-84)||(30743482-30743557)
chr2 (88-119)||(38453059-38453090)
chr2 (17-83)||(3244007-3244073)
chr2 (34-84)||(6238127-6238177)
chr2 (9-87)||(45367972-45368050)
chr2 (88-116)||(4807407-4807435)
chr2 (32-84)||(12734564-12734616)
[»] chr5 (16 HSPs)
chr5 (9-83)||(1287937-1288011)
chr5 (9-83)||(12492735-12492809)
chr5 (15-83)||(28977211-28977279)
chr5 (9-83)||(2075822-2075896)
chr5 (9-83)||(10639157-10639231)
chr5 (9-83)||(20318847-20318921)
chr5 (9-83)||(34272882-34272956)
chr5 (9-119)||(16347726-16347848)
chr5 (9-66)||(24178387-24178444)
chr5 (9-83)||(1275125-1275199)
chr5 (88-119)||(1275077-1275108)
chr5 (88-119)||(2075913-2075944)
chr5 (88-119)||(12492826-12492857)
chr5 (88-119)||(28977296-28977327)
chr5 (9-86)||(36200639-36200716)
chr5 (91-119)||(24178336-24178364)
[»] chr6 (13 HSPs)
chr6 (9-86)||(608016-608093)
chr6 (9-86)||(9706633-9706710)
chr6 (9-119)||(10100205-10100327)
chr6 (9-86)||(14030663-14030740)
chr6 (15-84)||(30031115-30031184)
chr6 (9-86)||(33496041-33496118)
chr6 (9-85)||(20427984-20428060)
chr6 (9-80)||(28085239-28085310)
chr6 (10-84)||(2065105-2065179)
chr6 (9-87)||(5631674-5631752)
chr6 (9-69)||(35043789-35043849)
chr6 (85-119)||(5258586-5258620)
chr6 (83-119)||(24631188-24631224)
[»] scaffold0024 (1 HSPs)
scaffold0024 (9-117)||(82535-82655)
[»] scaffold0570 (2 HSPs)
scaffold0570 (9-83)||(2618-2692)
scaffold0570 (88-119)||(2709-2740)
[»] scaffold0157 (1 HSPs)
scaffold0157 (17-69)||(25801-25853)
[»] scaffold0018 (1 HSPs)
scaffold0018 (17-83)||(31328-31394)
[»] scaffold0113 (1 HSPs)
scaffold0113 (9-83)||(11946-12020)


Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 9 - 503
Target Start/End: Complemental strand, 1793394 - 1792900
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattgttgtccgatagaactttccttt 108  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1793394 acatcctcatctccgctacacttacttgattctagtgttggctcttaaccgccaaacactctgtatcatacaacattgttgtccgatagaactttccttt 1793295  T
Q  109 caacttaagtgacaattagtataaatgatccctaaaaatacatctatataaatgannnnnnnnnnnnnnnnnnnnnnnncatatctttcctacatttgag 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||                        ||||||||||||||| || ||    
T  1793294 caacttaagtgacaattagtataaatgatccctaaaaatacatctatataaatgattttttgtttatttttttgtttttcatatctttcctacaattaag 1793195  T
Q  209 gtaatcttatttgagacatgtcgtacgctaaatatgaacttctctatcgttgagtttctgacatatattgatttgatatgttatgaaagactccttatgc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||| |||||||||||||||    
T  1793194 gtaatcttatttgagacatgtcgtacgctaaatatgaacttctctatcgcttagtttctgacatatattgattcgatatgttataaaagactccttatgc 1793095  T
Q  309 taaattcaaccacgttggttgactgagtgcatttagtaatatgtaattataaatagagtaatgatgcattgaccaccctatatggcaaccctccatgatt 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1793094 taaattcaaccacgttggttgactgagtgcatttagtaatatgtaattataaatagagcaatgatgcattgaccaccctatatggcaaccctccatgatt 1792995  T
Q  409 cgaattccttgcaggttaggttttccacattattcatacagtcagatgcattgtttgtggatggatcgaaatcggaggatgtaggtttcatgcag 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  1792994 cgaattccttgcaggttaggttttccacattattcatacagtcagatgcattgtttgtcgatggatcaaaatcggaggatgtaggtttcatgcag 1792900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 43433852 - 43433727
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaac------------attgttgtccgata 96  Q
    ||||| ||||||| |||||||||||||||||||  |||||||||||||||||| ||||||| ||| ||||||||            |||| |||||||||    
T  43433852 acatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgccggtctgattgctgtccgata 43433753  T
Q  97 gaactttcctttcaacttaagtgaca 122  Q
    ||||||||||||||||||||||||||    
T  43433752 gaactttcctttcaacttaagtgaca 43433727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 1211738 - 1211860
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacat------------tgttgtccgata 96  Q
    ||||| |||| |||||||||||||||||||||| |||||| |||||||||| | ||||||||||| || |||||||            ||||||||||||    
T  1211738 acatcctcatatccgctacacttacttgattctcgtgttggctcttaaccgtccaacactctgtaccacacaacatcaccggtctgactgttgtccgata 1211837  T
Q  97 gaactttcctttcaacttaagtg 119  Q
    |||||||||||||||||||||||    
T  1211838 gaactttcctttcaacttaagtg 1211860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 26037836 - 26037904
Alignment:
Q  15 tcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||||||||| ||||||||||||||| |||||| |||||||||||| ||||||| |||||||||||||    
T  26037836 tcatctccgctccacttacttgattctcgtgttggctcttaaccgcccaacactccgtatcatacaaca 26037904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 50286899 - 50286831
Alignment:
Q  15 tcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||||| |||||||||||||||||||  |||||||||||||||||| ||||||| |||||||||||||    
T  50286899 tcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtatcatacaaca 50286831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 436163 - 436089
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| |||||||||||||||||||  |||||||||||||||||| ||||||| ||| |||||||||    
T  436163 acatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaaca 436089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 31960162 - 31960236
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| |||||||||||||||||||  |||||||||||||||||| ||||||| ||| |||||||||    
T  31960162 acatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaaca 31960236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 39708392 - 39708314
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattgt 87  Q
    ||||| |||||| | |||||||||||||||||| |||||| |||||||||||| ||||||| ||| |||||||||||||    
T  39708392 acatcctcatctgcactacacttacttgattctcgtgttgcctcttaaccgcccaacactccgtaccatacaacattgt 39708314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 46583172 - 46583246
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| |||||||||||||||||||  |||||||||||||||||| ||||||| ||| |||||||||    
T  46583172 acatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaaca 46583246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 53707728 - 53707657
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcataca 80  Q
    ||||| ||||||| |||||||||||||||||||  |||||||||||||||||| |||||||| || ||||||    
T  53707728 acatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactctctaccataca 53707657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 23906649 - 23906723
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| |||||||||||||||||||  |||||||||||||||||| ||||||  ||| |||||||||    
T  23906649 acatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacacttcgtaccatacaaca 23906723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 27450521 - 27450599
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattgt 87  Q
    ||||| ||||||||||||||||||||| | ||| |||||| |||||||| ||| ||||||| ||| |||||||||||||    
T  27450521 acatcctcatctccgctacacttactttactctcgtgttggctcttaactgcccaacactccgtaccatacaacattgt 27450599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 33227143 - 33227069
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| ||||||||||| |||||||  |||||||||||||||||| ||||||| ||| |||||||||    
T  33227143 acatcctcatctctgctacacttacatgattctcatgttgactcttaaccgcccaacactccgtaccatacaaca 33227069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 12494684 - 12494624
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactc 69  Q
    ||||| ||||||| |||||||||||||||||||  |||||||||||||||||| |||||||    
T  12494684 acatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactc 12494624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 45205196 - 45205271
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacat 84  Q
    ||||| ||||||||||||| ||||||||||||| ||||||  ||||||| ||| ||||||| ||| ||||||||||    
T  45205196 acatcctcatctccgctacgcttacttgattctcgtgttggttcttaactgcccaacactccgtaccatacaacat 45205271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 4440781 - 4440716
Alignment:
Q  17 atctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| |||||||||||||||||||  |||||||||||||||||| ||||| | |||||||||||||    
T  4440781 atctctgctacacttacttgattctcatgttgactcttaaccgcc-aacaccccgtatcatacaaca 4440716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 33191196 - 33191256
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactc 69  Q
    ||||| ||||||| |||||||||||||||||||  ||||||||||||| |||| |||||||    
T  33191196 acatcctcatctctgctacacttacttgattctcatgttgactcttaatcgcccaacactc 33191256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 56375224 - 56375152
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaa 81  Q
    ||||| ||||||| |||||||||  ||||||||  |||||||||||||||||| ||||||| ||| |||||||    
T  56375224 acatcctcatctctgctacacttgtttgattctcatgttgactcttaaccgcccaacactccgtaccatacaa 56375152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 16002861 - 16002802
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacact 68  Q
    |||||||| ||| | |||||||||||||||||| |||||||||||||||| || ||||||    
T  16002861 acatcatcgtcttcactacacttacttgattctcgtgttgactcttaacctcccaacact 16002802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 41009698 - 41009773
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacat 84  Q
    ||||| |||| ||||||||||||||||||||||  ||||| ||||||| |||| ||||||| |||  |||||||||    
T  41009698 acatcctcatttccgctacacttacttgattctcatgttggctcttaatcgcccaacactccgtactatacaacat 41009773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 47265550 - 47265625
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacat 84  Q
    ||||| ||||||  ||||||| ||||||||||| ||||||||||||||||| | || ||| |||| ||||||||||    
T  47265550 acatcctcatctttgctacacctacttgattctcgtgttgactcttaaccgtccaatactttgtaccatacaacat 47265625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 52569871 - 52569937
Alignment:
Q  17 atctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| |||||||||||||||||||  ||||||||||||||||   ||||||| ||| |||||||||    
T  52569871 atctctgctacacttacttgattctcatgttgactcttaaccgaacaacactccgtaccatacaaca 52569937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 39100881 - 39100945
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgta 73  Q
    ||||| ||||||||||||||||||| ||| ||| |||||| |||||||| | | |||||||||||    
T  39100881 acatcctcatctccgctacacttacatgactctcgtgttggctcttaactgtccaacactctgta 39100945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Complemental strand, 436072 - 436041
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  436072 tgtccgatagaactttcctttcaacttaagtg 436041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Original strand, 1777454 - 1777485
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  1777454 tgtccgatagaactttcctttcaacttaagtg 1777485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 7092567 - 7092642
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacat 84  Q
    ||||| ||||||| |||||||||||||| |||| ||||||  ||||||| ||| || |||| ||| ||||||||||    
T  7092567 acatcctcatctctgctacacttacttgcttctcgtgttggttcttaactgcctaaaactccgtaccatacaacat 7092642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Original strand, 23906740 - 23906771
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  23906740 tgtccgatagaactttcctttcaacttaagtg 23906771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Original strand, 31960253 - 31960284
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  31960253 tgtccgatagaactttcctttcaacttaagtg 31960284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Complemental strand, 33227052 - 33227021
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  33227052 tgtccgatagaactttcctttcaacttaagtg 33227021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Original strand, 48174532 - 48174563
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  48174532 tgtccgatagaactttcctttcaacttaagtg 48174563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Original strand, 48622966 - 48622997
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  48622966 tgtccgatagaactttcctttcaacttaagtg 48622997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 48174441 - 48174515
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||  |||| |||||||||||| |  |||||||||||||||| | ||||||| ||| |||||||||    
T  48174441 acatcctcatctttgctatacttacttgattttcatgttgactcttaaccgtccaacactccgtaccatacaaca 48174515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 116
Target Start/End: Complemental strand, 50286816 - 50286786
Alignment:
Q  86 gttgtccgatagaactttcctttcaacttaa 116  Q
    |||||||||||||||||||||||||||||||    
T  50286816 gttgtccgatagaactttcctttcaacttaa 50286786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 119
Target Start/End: Original strand, 52569951 - 52569985
Alignment:
Q  85 tgttgtccgatagaactttcctttcaacttaagtg 119  Q
    |||||||| ||||||||||||||||||||||||||    
T  52569951 tgttgtccaatagaactttcctttcaacttaagtg 52569985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 55578951 - 55578885
Alignment:
Q  23 gctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattgttg 89  Q
    |||||||||| |||||||| ||||||  ||||||||||| ||||||   || |||||||||||||||    
T  55578951 gctacacttaattgattctcgtgttggttcttaaccgcccaacacttcataccatacaacattgttg 55578885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 27983128 - 27983083
Alignment:
Q  15 tcatctccgctacacttacttgattctagtgttgactcttaaccgc 60  Q
    ||||||||||||||||||||| | |||  |||||||||||||||||    
T  27983128 tcatctccgctacacttactttactctcatgttgactcttaaccgc 27983083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 48622889 - 48622938
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaacc 58  Q
    ||||| ||||||| |||||||||||||||||||  ||||||||| |||||    
T  48622889 acatcctcatctctgctacacttacttgattctcatgttgactcctaacc 48622938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 39708298 - 39708270
Alignment:
Q  91 ccgatagaactttcctttcaacttaagtg 119  Q
    |||||||||||||||||||||||||||||    
T  39708298 ccgatagaactttcctttcaacttaagtg 39708270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 53707634 - 53707606
Alignment:
Q  91 ccgatagaactttcctttcaacttaagtg 119  Q
    |||||||||||||||||||||||||||||    
T  53707634 ccgatagaactttcctttcaacttaagtg 53707606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 7272973 - 7272895
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattgt 87  Q
    ||||| ||||||||| ||||||||||||||||| |||||| |||| ||||||| |||||||||||||||||||||||||    
T  7272973 acatcctcatctccggtacacttacttgattctcgtgttggctctcaaccgcccaacactctgtatcatacaacattgt 7272895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 33072888 - 33072814
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||||||||||| |||||||||| ||||||||  |||||||||||||||||| ||||||||||| |||||||||    
T  33072888 acatcatcatctctgctacacttatttgattctcatgttgactcttaaccgcccaacactctgtaccatacaaca 33072814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 31005157 - 31005083
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| |||||||||||||||||||  |||||||||||||||||| ||||||| ||| |||||||||    
T  31005157 acatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcctaacactccgtaccatacaaca 31005083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 33350154 - 33350228
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| |||||||||||||||||||  |||||||||||||||||| ||||||| ||| |||||||||    
T  33350154 acatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaaca 33350228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 35906549 - 35906623
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| |||||||||||||||||||  ||||||||||||||| || ||||||| |||||||||||||    
T  35906549 acatcctcatctctgctacacttacttgattctcatgttgactcttaaccacccaacactccgtatcatacaaca 35906623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 49029210 - 49029136
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| |||||||||||||||||||  |||||||||||||||||| ||||||| ||| |||||||||    
T  49029210 acatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaaca 49029136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 11593894 - 11593772
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaac------------attgttgtccgata 96  Q
    ||||| ||||||| |||||||||||||||||||  |||||||||||||||| | ||||||| ||| ||||||||            | ||||||||||||    
T  11593894 acatcctcatctctgctacacttacttgattctcatgttgactcttaaccgtccaacactccgtaccatacaacaacgccggtcgaactgttgtccgata 11593795  T
Q  97 gaactttcctttcaacttaagtg 119  Q
    |||||||||||||||||||||||    
T  11593794 gaactttcctttcaacttaagtg 11593772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 36651928 - 36651806
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaac------------attgttgtccgata 96  Q
    ||||| ||||||| | |||||||||||||||||  |||||||||||||||||| ||||||| ||| ||||||||            |||| |||||||||    
T  36651928 acatcctcatctctgttacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgccggtcggattgctgtccgata 36651829  T
Q  97 gaactttcctttcaacttaagtg 119  Q
    |||||||||||||||||||||||    
T  36651828 gaactttcctttcaacttaagtg 36651806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 38606939 - 38606862
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattg 86  Q
    |||| |||||||||||||||||||||| | ||| |||||| |||||||||||| ||||||| ||| ||||||||||||    
T  38606939 acattatcatctccgctacacttactttactctcgtgttggctcttaaccgcccaacactccgtaccatacaacattg 38606862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 12841623 - 12841697
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| |||||||||||||||||||  ||||||||||||||| || ||||||| ||| |||||||||    
T  12841623 acatcctcatctctgctacacttacttgattctcatgttgactcttaaccacccaacactccgtaccatacaaca 12841697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 34869354 - 34869280
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| |||||||  ||||||||||||||||||  |||||||||||||||||| ||||||| ||| |||||||||    
T  34869354 acatcctcatctctactacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaaca 34869280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 43281610 - 43281533
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattg 86  Q
    ||||| ||||| ||||||||||||||| | ||| | |||| |||||||||||| ||||||||||| ||||||||||||    
T  43281610 acatcctcatccccgctacacttactttactcttgcgttggctcttaaccgcccaacactctgtaccatacaacattg 43281533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 39906729 - 39906797
Alignment:
Q  15 tcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||||| |||||||||||||||||||  ||||||||||||| |||| ||||||| ||| |||||||||    
T  39906729 tcatctctgctacacttacttgattctcatgttgactcttaatcgcctaacactccgtaccatacaaca 39906797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 15681283 - 15681216
Alignment:
Q  17 atctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacat 84  Q
    |||||| |||||||||||||| ||| |||||| |||||||||||| |||||||| || ||||||||||    
T  15681283 atctccactacacttacttgagtctcgtgttggctcttaaccgcccaacactctataccatacaacat 15681216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 32630529 - 32630451
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattgt 87  Q
    ||||| ||||||||||||||||||||| | ||| ||||||  ||||||||||| | ||||| ||| |||||||||||||    
T  32630529 acatcctcatctccgctacacttactttactctcgtgttggttcttaaccgcccagcactccgtaccatacaacattgt 32630451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 36869637 - 36869759
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacat------------tgttgtccgata 96  Q
    ||||| ||||||| ||||||||||||||||||  |||||||||||||  |||  |||| || ||| ||||||||||            ||||||||||||    
T  36869637 acatcctcatctctgctacacttacttgattcacgtgttgactcttagtcgctcaacattccgtaccatacaacatcgccggcctgactgttgtccgata 36869736  T
Q  97 gaactttcctttcaacttaagtg 119  Q
    |||||||||||||||||||||||    
T  36869737 gaactttcctttcaacttaagtg 36869759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 37617878 - 37617826
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgcc 61  Q
    ||||| ||||||| ||||||||| |||||||||  ||||||||||||||||||    
T  37617878 acatcctcatctctgctacacttgcttgattctcatgttgactcttaaccgcc 37617826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 7189581 - 7189656
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacat 84  Q
    ||||| |||||||| |||  ||||||||||| | ||||||  |||||||| || ||||||||||| ||||||||||    
T  7189581 acatcctcatctccactatgcttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacat 7189656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Complemental strand, 31005066 - 31005035
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  31005066 tgtccgatagaactttcctttcaacttaagtg 31005035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Complemental strand, 34869263 - 34869232
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  34869263 tgtccgatagaactttcctttcaacttaagtg 34869232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Original strand, 35906640 - 35906671
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  35906640 tgtccgatagaactttcctttcaacttaagtg 35906671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Original strand, 39906814 - 39906845
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  39906814 tgtccgatagaactttcctttcaacttaagtg 39906845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 46356222 - 46356273
Alignment:
Q  32 acttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||||||||  |||||||||||||||||| ||||||| ||| |||||||||    
T  46356222 acttgattctcatgttgactcttaaccgcccaacactccgtaccatacaaca 46356273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 119
Target Start/End: Complemental strand, 23404264 - 23404230
Alignment:
Q  85 tgttgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||| |||||||||||||||||||    
T  23404264 tgttgtccgatagaattttcctttcaacttaagtg 23404230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 119
Target Start/End: Complemental strand, 33072800 - 33072766
Alignment:
Q  85 tgttgtccgatagaactttcctttcaacttaagtg 119  Q
    |||||||||||||||||||||||| ||||||||||    
T  33072800 tgttgtccgatagaactttccttttaacttaagtg 33072766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 119
Target Start/End: Complemental strand, 38606851 - 38606817
Alignment:
Q  85 tgttgtccgatagaactttcctttcaacttaagtg 119  Q
    |||||||||||||||||||||||||| ||||||||    
T  38606851 tgttgtccgatagaactttcctttcagcttaagtg 38606817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 118
Target Start/End: Original strand, 46356290 - 46356320
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagt 118  Q
    |||||||||||||||||||||||||||||||    
T  46356290 tgtccgatagaactttcctttcaacttaagt 46356320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 94 - 122
Target Start/End: Original strand, 13859451 - 13859479
Alignment:
Q  94 atagaactttcctttcaacttaagtgaca 122  Q
    |||||||||||||||||||||||||||||    
T  13859451 atagaactttcctttcaacttaagtgaca 13859479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 32630438 - 32630406
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtga 120  Q
    ||||||||||||||||||||||| |||||||||    
T  32630438 tgtccgatagaactttcctttcagcttaagtga 32630406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 38850028 - 38849953
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacat 84  Q
    ||||| ||||||| ||||||||||||||||||| ||||||||||||||||||| |||||| |||| ||||||||||    
T  38850028 acatcctcatctctgctacacttacttgattctcgtgttgactcttaaccgcccaacactttgtaccatacaacat 38849953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 3186697 - 3186580
Alignment:
Q  15 tcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacat------------tgttgtccgatagaactt 102  Q
    |||||| ||||||| |||||||||||| |||||||||||||| |||| |||||| | |||||||||||||            |||||||||||| |||||    
T  3186697 tcatctacgctacatttacttgattctcgtgttgactcttaatcgcccaacactatatatcatacaacatcgttggtgggactgttgtccgatataactt 3186598  T
Q  103 tcctttcaacttaagtga 120  Q
    ||||||||||||||||||    
T  3186597 tcctttcaacttaagtga 3186580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 25191313 - 25191237
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacatt 85  Q
    ||||| ||||||| ||||||||||||| | ||| ||||||||||||||| ||| ||||||||||| |||||||||||    
T  25191313 acatcctcatctctgctacacttactttactctcgtgttgactcttaacagcccaacactctgtaccatacaacatt 25191237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 33272376 - 33272450
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| |||||||||||||||||||  |||||||||||||| ||| ||||||| ||| |||||||||    
T  33272376 acatcctcatctctgctacacttacttgattctcatgttgactcttaactgcccaacactccgtaccatacaaca 33272450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 51448057 - 51448131
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| |||||||||| ||||||||  |||||||||||||||||| ||||||| ||| |||||||||    
T  51448057 acatcctcatctctgctacacttagttgattctcatgttgactcttaaccgcctaacactccgtaccatacaaca 51448131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 52138734 - 52138660
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| |||||||||||||||||||  | |||||||||||||||| ||||||  ||| |||||||||    
T  52138734 acatcctcatctctgctacacttacttgattctcatcttgactcttaaccgcccaacacttcgtaccatacaaca 52138660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 54278954 - 54278880
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| ||||||||||| |||||||  |||||||||||||| ||| ||||||| ||| |||||||||    
T  54278954 acatcctcatctctgctacacttacctgattcttatgttgactcttaactgcccaacactccgtaccatacaaca 54278880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 5168762 - 5168685
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattg 86  Q
    ||||| ||||||||||||||||||||| | |||  ||||| |||||||||||| | ||||| ||| ||||||||||||    
T  5168762 acatcctcatctccgctacacttactttactctcatgttggctcttaaccgcccagcactccgtaccatacaacattg 5168685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 26490251 - 26490194
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaaca 66  Q
    ||||| |||||||||||||||||||||||||||  |||||  ||||||||||| ||||    
T  26490251 acatcctcatctccgctacacttacttgattctcttgttggttcttaaccgcccaaca 26490194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 48953744 - 48953819
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacatt 85  Q
    ||||| |||||||||| ||||||||||| |||| ||||||  |||||| |||| ||||||| ||| |||||||||||    
T  48953744 acatcctcatctccgc-acacttacttgtttcttgtgttggatcttaaacgcccaacactccgtaacatacaacatt 48953819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Complemental strand, 28245280 - 28245249
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  28245280 tgtccgatagaactttcctttcaacttaagtg 28245249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 43695113 - 43695188
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacat 84  Q
    ||||| ||||||| | ||||||||||||||||| ||||| | ||| |||| || ||||||| ||| ||||||||||    
T  43695113 acatcctcatctctgttacacttacttgattctcgtgttaattctcaaccacccaacactccgtaccatacaacat 43695188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Original strand, 47542150 - 47542181
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  47542150 tgtccgatagaactttcctttcaacttaagtg 47542181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Complemental strand, 52138643 - 52138612
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  52138643 tgtccgatagaactttcctttcaacttaagtg 52138612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 28245371 - 28245297
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||  ||||||||||||| |||||  |||||||| ||||||||| ||||||| ||| | |||||||    
T  28245371 acatcctcatctttgctacacttacttaattctcatgttgacttttaaccgcccaacactccgtaccgtacaaca 28245297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 47542060 - 47542133
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| ||||||||| ||| |||||  |||||||||||||| ||| ||||||| ||| |||||||||    
T  47542060 acatcctcatctctgctacactttctt-attctcatgttgactcttaactgcccaacactccgtaccatacaaca 47542133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 49503915 - 49503967
Alignment:
Q  17 atctccgctacacttacttgattctagtgttgactcttaaccgccaaacactc 69  Q
    ||||||||||||||||||||||| |  |||||| ||||||||| | |||||||    
T  49503915 atctccgctacacttacttgattttcatgttgattcttaaccgtccaacactc 49503967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 18125103 - 18125029
Alignment:
Q  15 tcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattgttg 89  Q
    |||||||||||||||||||||||||||  ||||| |||||||||||| ||||||| ||| |||||||||||||||    
T  18125103 tcatctccgctacacttacttgattctcatgttggctcttaaccgcccaacactccgtaccatacaacattgttg 18125029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 36545081 - 36544964
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca-------ttgttgtccgatagaact 101  Q
    ||||| ||||||| |||||||||||||||||||  ||||||||||||||| || ||||||| ||| |||||||||       ||| | ||||||||||||    
T  36545081 acatcctcatctctgctacacttacttgattctcatgttgactcttaaccacccaacactcggtaccatacaacaacgctggttgctatccgatagaact 36544982  T
Q  102 ttcctttcaacttaagtg 119  Q
    ||| ||||||||||||||    
T  36544981 ttcttttcaacttaagtg 36544964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 39946791 - 39946716
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacat 84  Q
    ||||| ||||||| ||||||||||||||||||| ||||||||||||||||||| |||| || ||| ||||||||||    
T  39946791 acatcctcatctctgctacacttacttgattctcgtgttgactcttaaccgcccaacattccgtaccatacaacat 39946716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 42854352 - 42854430
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattgt 87  Q
    ||||| |||||||||||||||| |||| | ||| |||||| |||||||||||| ||||||| ||| |||||||||||||    
T  42854352 acatcgtcatctccgctacactaactttactctcgtgttggctcttaaccgcccaacactccgtaccatacaacattgt 42854430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 36565590 - 36565663
Alignment:
Q  10 catcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    |||| ||||||| |||||||||||||||||||  | |||||||||||||||| ||||||| ||| |||||||||    
T  36565590 catcctcatctctgctacacttacttgattctcatattgactcttaaccgcccaacactccgtaccatacaaca 36565663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 15215619 - 15215695
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacatt 85  Q
    ||||| ||||||||||| ||||||||| | ||| |||||| |||||||||||| ||||||| ||| |||||||||||    
T  15215619 acatcctcatctccgcttcacttactttactctcgtgttggctcttaaccgcccaacactccgtaccatacaacatt 15215695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 25288836 - 25288761
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacat 84  Q
    ||||| |||| || |||||||||| |||||||| |||||| |||||||||||| ||||||| ||| ||||||||||    
T  25288836 acatcctcatatctgctacacttatttgattctcgtgttggctcttaaccgcccaacactccgtagcatacaacat 25288761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 25300171 - 25300096
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacat 84  Q
    ||||| |||| || |||||||||| |||||||| |||||| |||||||||||| ||||||| ||| ||||||||||    
T  25300171 acatcctcatatctgctacacttatttgattctcgtgttggctcttaaccgcccaacactccgtagcatacaacat 25300096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 37077699 - 37077628
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcataca 80  Q
    ||||| |||||||||| |||||||||||||||| |||||| |||||||| ||| ||||||| ||| ||||||    
T  37077699 acatcctcatctccgccacacttacttgattctcgtgttggctcttaactgcccaacactccgtaccataca 37077628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 36395318 - 36395375
Alignment:
Q  26 acacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||||||||||||||  |||||||||||||||||| ||||||| ||| |||||||||    
T  36395318 acacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaaca 36395375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 18752227 - 18752298
Alignment:
Q  15 tcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattg 86  Q
    ||||||||||||||||||||| | ||| |||||| |||||||||| | | ||||| ||| ||||||||||||    
T  18752227 tcatctccgctacacttactttactctcgtgttggctcttaaccgtccagcactccgtaccatacaacattg 18752298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 2796489 - 2796415
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||  ||||||||||||||||||| |||||||||||||||| || || |||| ||| |||| ||||    
T  2796489 acatcctcatctttgctacacttacttgattctcgtgttgactcttaaccacccaagactcggtaccatataaca 2796415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 12492190 - 12492264
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| |||| || ||||||||||| |||||||  |||||||||||||||||| ||||||| ||| ||| |||||    
T  12492190 acatcctcatatctgctacacttacatgattctcatgttgactcttaaccgcccaacactccgtaccatgcaaca 12492264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 8879794 - 8879846
Alignment:
Q  15 tcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacac 67  Q
    ||||||||||||||||||||||||||| ||| || ||||| |||||| |||||    
T  8879794 tcatctccgctacacttacttgattcttgtgctggctcttcaccgcccaacac 8879846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Original strand, 36395392 - 36395423
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  36395392 tgtccgatagaactttcctttcaacttaagtg 36395423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Original strand, 36565680 - 36565711
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  36565680 tgtccgatagaactttcctttcaacttaagtg 36565711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 119
Target Start/End: Original strand, 4032930 - 4032964
Alignment:
Q  85 tgttgtccgatagaactttcctttcaacttaagtg 119  Q
    |||||||||||| ||||||||||||||||||||||    
T  4032930 tgttgtccgataaaactttcctttcaacttaagtg 4032964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 32083093 - 32083171
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattgt 87  Q
    ||||| ||||||||||||||| ||||| | ||| ||||||||||||||||||| ||||||||||| |||||||||||||    
T  32083093 acatcctcatctccgctacacatactttactctcgtgttgactcttaaccgcccaacactctgtaccatacaacattgt 32083171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 30202478 - 30202600
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaac------------attgttgtccgata 96  Q
    ||||| ||||||| |||||||||||||||||||  |||||||||||||||||| ||||||||||| || |||||            | ||||||||||||    
T  30202478 acatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactctgtaccacacaacaacgccggtcggactgttgtccgata 30202577  T
Q  97 gaactttcctttcaacttaagtg 119  Q
    |||||||||||||||||||||||    
T  30202578 gaactttcctttcaacttaagtg 30202600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 1210679 - 1210605
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| |||||||||||||||||||  |||||||||||||||||| ||||||| ||| |||||||||    
T  1210679 acatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaaca 1210605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 43240729 - 43240803
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| |||||||||||||||||||  ||||||||||||||| || ||||||| |||||||||||||    
T  43240729 acatcctcatctctgctacacttacttgattctcatgttgactcttaacctcccaacactccgtatcatacaaca 43240803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 8391706 - 8391637
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcata 78  Q
    ||||| ||||||||||||||||||||| | ||| ||||||||||||||||||| ||||||||||| ||||    
T  8391706 acatcttcatctccgctacacttactttactctcgtgttgactcttaaccgcccaacactctgtaccata 8391637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 15085868 - 15085791
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattg 86  Q
    ||||| ||||||||||||||||||||| | ||| |||||| |||||||||||| ||||||| ||| ||||||||||||    
T  15085868 acatcctcatctccgctacacttactttactctcgtgttggctcttaaccgcccaacactccgtaccatacaacattg 15085791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 3192133 - 3192071
Alignment:
Q  16 catctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcata 78  Q
    |||||| |||||||||||||||||||  |||||||||||||||||| ||||||||||| ||||    
T  3192133 catctctgctacacttacttgattctcatgttgactcttaaccgcccaacactctgtaccata 3192071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 3200951 - 3200889
Alignment:
Q  16 catctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcata 78  Q
    |||||| |||||||||||||||||||  |||||||||||||||||| ||||||||||| ||||    
T  3200951 catctctgctacacttacttgattctcatgttgactcttaaccgcccaacactctgtaccata 3200889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 3209788 - 3209726
Alignment:
Q  16 catctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcata 78  Q
    |||||| |||||||||||||||||||  |||||||||||||||||| ||||||||||| ||||    
T  3209788 catctctgctacacttacttgattctcatgttgactcttaaccgcccaacactctgtaccata 3209726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 9592668 - 9592594
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| |||||||||||||||||||  |||||| ||||||||||| ||||||| ||| |||||||||    
T  9592668 acatcctcatctctgctacacttacttgattctcatgttgattcttaaccgcccaacactccgtaccatacaaca 9592594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 51441113 - 51441187
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| |||||||| ||||||||||  |||||||||||||||||| ||||||| ||| |||||||||    
T  51441113 acatcctcatctctgctacactcacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaaca 51441187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 696203 - 696126
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattg 86  Q
    ||||| ||||||||||||||||||||| | ||| |||||| ||||||||| || ||||||| ||| ||||||||||||    
T  696203 acatcctcatctccgctacacttactttactctcgtgttggctcttaaccacccaacactccgtaccatacaacattg 696126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 22090027 - 22089954
Alignment:
Q  10 catcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    |||| ||||||| |||||||||||||||||||  |||||||||||||||||| ||||||| ||| || ||||||    
T  22090027 catcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccacacaaca 22089954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 34792697 - 34792768
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaa 81  Q
    ||||| ||||||| ||||||||| ||||||||| ||||||||||||||||||| ||||||| ||| |||||||    
T  34792697 acatcctcatctctgctacactt-cttgattctcgtgttgactcttaaccgcccaacactccgtaccatacaa 34792768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 49347741 - 49347815
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||  |||||||||||||||||||  |||||||||||||||||| ||||||  ||| |||||||||    
T  49347741 acatcctcatctttgctacacttacttgattctcatgttgactcttaaccgcccaacacttcgtaccatacaaca 49347815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 51601977 - 51601918
Alignment:
Q  24 ctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||||||||||||||||  ||||||||||||||| || ||||||| ||| |||||||||    
T  51601977 ctacacttacttgattctcatgttgactcttaaccacccaacactccgtaccatacaaca 51601918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 32231302 - 32231359
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaaca 66  Q
    ||||| |||||||  |||||||||||||||||| |||||||| |||||||||| ||||    
T  32231302 acatcctcatctctactacacttacttgattctcgtgttgacccttaaccgcccaaca 32231359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 119
Target Start/End: Complemental strand, 9592578 - 9592546
Alignment:
Q  87 ttgtccgatagaactttcctttcaacttaagtg 119  Q
    |||||||||||||||||||||||||||||||||    
T  9592578 ttgtccgatagaactttcctttcaacttaagtg 9592546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Complemental strand, 1210588 - 1210557
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  1210588 tgtccgatagaactttcctttcaacttaagtg 1210557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Complemental strand, 22089937 - 22089906
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  22089937 tgtccgatagaactttcctttcaacttaagtg 22089906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Original strand, 43240820 - 43240851
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  43240820 tgtccgatagaactttcctttcaacttaagtg 43240851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 46226630 - 46226669
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttg 48  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  46226630 acatcatcatctccgctaaacttacttgattctcgtgttg 46226669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Original strand, 51441204 - 51441235
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  51441204 tgtccgatagaactttcctttcaacttaagtg 51441235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 119
Target Start/End: Complemental strand, 8671766 - 8671732
Alignment:
Q  85 tgttgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||| |||||||||||||||||||||||||||    
T  8671766 tgttgtctgatagaactttcctttcaacttaagtg 8671732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 8671846 - 8671804
Alignment:
Q  17 atctccgctacacttacttgattctagtgttgactcttaaccg 59  Q
    ||||| |||||||||||||||||||  ||||||||||||||||    
T  8671846 atctctgctacacttacttgattctcatgttgactcttaaccg 8671804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 18469429 - 18469503
Alignment:
Q  10 catcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacat 84  Q
    |||| |||||||||||||  |||||||||||| ||||||  ||||||||||| |  |||  ||||||||||||||    
T  18469429 catcgtcatctccgctacgtttacttgattctcgtgttggttcttaaccgcccagtacttagtatcatacaacat 18469503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 37463238 - 37463292
Alignment:
Q  32 acttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattg 86  Q
    |||||||||| ||||||  |||||||| || ||||||||||| ||||||||||||    
T  37463238 acttgattcttgtgttggttcttaaccacccaacactctgtaccatacaacattg 37463292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 2610461 - 2610340
Alignment:
Q  10 catcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaac------------attgttgtccgatag 97  Q
    |||| ||||||| |||||||||||||||||||  |||||||||||||||||| ||||||| ||| ||||||||            | |||||||||||||    
T  2610461 catcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgccagtctgactgttgtccgatag 2610362  T
Q  98 aactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||    
T  2610361 aactttcctttcaacttaagtg 2610340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 3866006 - 3865885
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaac------------attgttgtccgata 96  Q
    ||||||||||||| |||||||||||||||||||  |||||||||||||||| | ||||||| ||| ||||||||            | ||||||||||||    
T  3866006 acatcatcatctctgctacacttacttgattctcatgttgactcttaaccgtccaacactccgtaccatacaacaacgtcggtctgactgttgtccgata 3865907  T
Q  97 gaactttcctttcaacttaagt 118  Q
    ||||||||||||||||||||||    
T  3865906 gaactttcctttcaacttaagt 3865885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 36183385 - 36183264
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaac------------attgttgtccgata 96  Q
    ||||| ||||||| |||||||||||||||||||  |||||||||||||||||| ||||||| ||| ||||||||            | ||||||||||||    
T  36183385 acatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgccggtcggactgttgtccgata 36183286  T
Q  97 gaactttcctttcaacttaagt 118  Q
    ||||||||||||||||||||||    
T  36183285 gaactttcctttcaacttaagt 36183264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 24583954 - 24584029
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacat 84  Q
    ||||| ||||||| ||||||||||||||||||| ||||||||||||||||||| |||| | |||| ||||||||||    
T  24583954 acatcttcatctctgctacacttacttgattctcgtgttgactcttaaccgcccaacattttgtaccatacaacat 24584029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 11992454 - 11992531
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattg 86  Q
    ||||| ||||||||||||||||||||| | ||| ||||||||||||||||||| | ||||| ||| ||||||||||||    
T  11992454 acatcctcatctccgctacacttactttactctcgtgttgactcttaaccgcccatcactccgtaccatacaacattg 11992531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 41197576 - 41197653
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattg 86  Q
    ||||| ||||||||||||||||||||| | ||| |||||| |||||||||||| |||||| |||| ||||||||||||    
T  41197576 acatcctcatctccgctacacttactttactctcgtgttggctcttaaccgcccaacactttgtaccatacaacattg 41197653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 41763389 - 41763466
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattg 86  Q
    ||||| ||||||||||||||||||||| | ||| ||||||  ||||||||||| ||||||||||| ||||||||||||    
T  41763389 acatcctcatctccgctacacttactttactctcgtgttggttcttaaccgcccaacactctgtaccatacaacattg 41763466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 451976 - 452044
Alignment:
Q  15 tcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||||| |||||||||||||||||||  |||||||||||||||||| ||||||| ||| |||||||||    
T  451976 tcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaaca 452044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 4807526 - 4807452
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| ||||||||||||| |||||  |||||||||||||||||  |||||||||| ||||||||||    
T  4807526 acatcctcatctctgctacacttacttaattctcatgttgactcttaaccgctcaacactctgtgtcatacaaca 4807452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 8180714 - 8180640
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| |||||||||||||||||||  |||||||||||||||| | ||||||| ||| |||||||||    
T  8180714 acatcctcatctctgctacacttacttgattctcatgttgactcttaaccgtccaacactccgtaccatacaaca 8180640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 37282041 - 37281966
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacat 84  Q
    ||||| |||||||  ||| |||||||||||||| || |||| ||||||||||  ||||||||||||||||||||||    
T  37282041 acatcctcatctcaactatacttacttgattctcgtattgattcttaaccgcttaacactctgtatcatacaacat 37281966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 23997551 - 23997473
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattgt 87  Q
    ||||| ||||||||| ||||||||||||  ||| ||||||||||||||| ||| ||||||  ||| |||||||||||||    
T  23997551 acatcttcatctccgttacacttacttggctctcgtgttgactcttaactgcccaacacttcgtaccatacaacattgt 23997473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 32443527 - 32443470
Alignment:
Q  30 ttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattgt 87  Q
    |||||||||||| ||||||| |||||||| || ||||||||||| |||||||||||||    
T  32443527 ttacttgattctcgtgttgattcttaaccacccaacactctgtaccatacaacattgt 32443470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 38429818 - 38429741
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattg 86  Q
    ||||| ||||||||||||||||||||  | ||| ||||||  ||||||||||| ||||||| ||| ||||||||||||    
T  38429818 acatcctcatctccgctacacttactctactctcgtgttggttcttaaccgcccaacactccgtaccatacaacattg 38429741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 16097338 - 16097388
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccg 59  Q
    ||||| |||||||||||||||||||||||||||  ||||| ||||||||||    
T  16097338 acatcctcatctccgctacacttacttgattctcatgttggctcttaaccg 16097388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Original strand, 452061 - 452092
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  452061 tgtccgatagaactttcctttcaacttaagtg 452092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Complemental strand, 8180623 - 8180592
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  8180623 tgtccgatagaactttcctttcaacttaagtg 8180592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 30743557 - 30743482
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacat 84  Q
    ||||| |||||||| | |||||||||||||||| |||||| || |||| |||| ||| ||| ||| ||||||||||    
T  30743557 acatcctcatctccacaacacttacttgattctcgtgttggcttttaatcgcctaactctccgtaccatacaacat 30743482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Original strand, 38453059 - 38453090
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  38453059 tgtccgatagaactttcctttcaacttaagtg 38453090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 3244007 - 3244073
Alignment:
Q  17 atctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| |||||||||||||||||||  |||||||||||||| | | ||||||| ||| ||| |||||    
T  3244007 atctctgctacacttacttgattctcatgttgactcttaactgtccaacactccgtaccattcaaca 3244073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 6238127 - 6238177
Alignment:
Q  34 ttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacat 84  Q
    |||||||| |||||||||||||||| || ||||||| ||| ||||||||||    
T  6238127 ttgattctcgtgttgactcttaaccacccaacactccgtaccatacaacat 6238177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 45367972 - 45368050
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattgt 87  Q
    ||||||||||||||| || |||||||| | ||| |||||| ||||||| |||| | ||||| ||| | |||||||||||    
T  45367972 acatcatcatctccgttatacttactttactctcgtgttggctcttaatcgcccagcactccgtaccttacaacattgt 45368050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 4807435 - 4807407
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaa 116  Q
    |||||||||||||||||||||||||||||    
T  4807435 tgtccgatagaactttcctttcaacttaa 4807407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 12734616 - 12734564
Alignment:
Q  32 acttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacat 84  Q
    ||||||||||  ||||| |||| ||||||| ||||||||||| ||||||||||    
T  12734616 acttgattctcatgttggctctaaaccgcccaacactctgtaccatacaacat 12734564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 1287937 - 1288011
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| |||||||||||||||||||  |||||||||||||||||| ||||||| ||| |||||||||    
T  1287937 acatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaaca 1288011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 12492735 - 12492809
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| |||||||||||||||||||  |||||||||||||||||| ||||||| ||| |||||||||    
T  12492735 acatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaaca 12492809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 28977211 - 28977279
Alignment:
Q  15 tcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||||| |||||||||||||||||||  |||||||||||||||||| ||||||| ||| |||||||||    
T  28977211 tcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaaca 28977279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 2075822 - 2075896
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| ||||||||||||| |||||  |||||||||||||||||| ||||||| ||| |||||||||    
T  2075822 acatcctcatctctgctacacttacttaattctcatgttgactcttaaccgcccaacactccgtaccatacaaca 2075896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 10639231 - 10639157
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| |||||||||||||||||||  ||||||||||| |||||| ||||||| ||| |||||||||    
T  10639231 acatcctcatctctgctacacttacttgattctcatgttgactcttcaccgcccaacactccgtaccatacaaca 10639157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 20318921 - 20318847
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| |||||||||||||||||||  |||||||||||||||||  ||||||| ||| |||||||||    
T  20318921 acatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcgcaacactccgtaccatacaaca 20318847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 34272956 - 34272882
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| |||||||||||||||||||  | |||||||||||||||| ||||||| ||| |||||||||    
T  34272956 acatcctcatctctgctacacttacttgattctcatattgactcttaaccgcccaacactccgtaccatacaaca 34272882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 16347726 - 16347848
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacat------------tgttgtccgata 96  Q
    ||||| ||||||||||||||||||||| | ||| |||||| |||||||||||  ||||||| ||| ||||||| ||            ||||||||||||    
T  16347726 acatcctcatctccgctacacttacttaactctcgtgttggctcttaaccgctcaacactccgtaccatacaatatcgtcggtctgagtgttgtccgata 16347825  T
Q  97 gaactttcctttcaacttaagtg 119  Q
    |||||||||||||||||||||||    
T  16347826 gaactttcctttcaacttaagtg 16347848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 24178444 - 24178387
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaaca 66  Q
    ||||| ||||||| |||||||||||||||||||  |||||||||||||||||| ||||    
T  24178444 acatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaaca 24178387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 1275199 - 1275125
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| ||||  |||||||||||||  ||||||||| |||||||| ||||||| ||| |||||||||    
T  1275199 acatcctcatctctgctatgcttacttgattctcatgttgactcgtaaccgcccaacactccgtaccatacaaca 1275125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Complemental strand, 1275108 - 1275077
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  1275108 tgtccgatagaactttcctttcaacttaagtg 1275077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Original strand, 2075913 - 2075944
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  2075913 tgtccgatagaactttcctttcaacttaagtg 2075944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Original strand, 12492826 - 12492857
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  12492826 tgtccgatagaactttcctttcaacttaagtg 12492857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Original strand, 28977296 - 28977327
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  28977296 tgtccgatagaactttcctttcaacttaagtg 28977327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 36200716 - 36200639
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattg 86  Q
    ||||| ||||||| | ||| |||||||||||||   ||||  ||||||||||| | |||| |||||||||||||||||    
T  36200716 acatcctcatctctgatacgcttacttgattctcacgttggttcttaaccgcctaccactttgtatcatacaacattg 36200639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 24178364 - 24178336
Alignment:
Q  91 ccgatagaactttcctttcaacttaagtg 119  Q
    |||||||||||||||||||||||||||||    
T  24178364 ccgatagaactttcctttcaacttaagtg 24178336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 608093 - 608016
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattg 86  Q
    ||||| ||||||||||||||||||||| ||||| |||||| |||||||||||| ||||||| |||  |||||||||||    
T  608093 acatcctcatctccgctacacttactttattctcgtgttggctcttaaccgcccaacactccgtacaatacaacattg 608016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 9706710 - 9706633
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattg 86  Q
    ||||| ||||||||||||||||||||| | ||| |||||||||||||||| || ||||||  ||| ||||||||||||    
T  9706710 acatcctcatctccgctacacttactttactctcgtgttgactcttaaccacctaacacttcgtaccatacaacattg 9706633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 10100205 - 10100327
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattgt------------tgtccgata 96  Q
    ||||| ||||||||||||||||||||||| ||| || ||| ||||||||| || ||||||| ||| |||||||||| ||            |||||||||    
T  10100205 acatcctcatctccgctacacttacttgactctcgtcttggctcttaacctcccaacactccgtaccatacaacatcgtcggtctgactactgtccgata 10100304  T
Q  97 gaactttcctttcaacttaagtg 119  Q
    |||||||||||||||||||||||    
T  10100305 gaactttcctttcaacttaagtg 10100327  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 14030740 - 14030663
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattg 86  Q
    ||||| ||||||| ||||||||||||| | ||| ||||||||| ||||||||| ||||||| ||| ||||||||||||    
T  14030740 acatcctcatctctgctacacttactttactctcgtgttgacttttaaccgcccaacactccgtaccatacaacattg 14030663  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 30031184 - 30031115
Alignment:
Q  15 tcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacat 84  Q
    |||||||||||||||| ||||||||||  ||||| |||||||||||| ||||||| ||| ||||||||||    
T  30031184 tcatctccgctacactaacttgattctcatgttggctcttaaccgcccaacactccgtaccatacaacat 30031115  T

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Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 33496118 - 33496041
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattg 86  Q
    ||||||||||||||| |||||||||||||||||  |||||  | ||||||| | ||||||||||| ||||||||||||    
T  33496118 acatcatcatctccgttacacttacttgattctcatgttggtttttaaccgtccaacactctgtaccatacaacattg 33496041  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 20427984 - 20428060
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacatt 85  Q
    ||||| |||||||||||||||||| |||| ||| |||||| ||||||||| || |||||||||||  ||||||||||    
T  20427984 acatcctcatctccgctacacttatttgactctcgtgttggctcttaaccacccaacactctgtactatacaacatt 20428060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 28085310 - 28085239
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcataca 80  Q
    ||||| ||||||| |||||||||||||||||||  |||||||||||| ||||| ||||||| ||| ||||||    
T  28085310 acatcctcatctctgctacacttacttgattctcatgttgactcttagccgcccaacactccgtaccataca 28085239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 2065105 - 2065179
Alignment:
Q  10 catcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacat 84  Q
    |||| ||||||||||||||| ||||||||||| |||||| |||||||||| | |||| || ||| ||||||||||    
T  2065105 catcctcatctccgctacacgtacttgattctcgtgttggctcttaaccgtccaacattccgtaccatacaacat 2065179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 5631752 - 5631674
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacattgt 87  Q
    ||||| |||||| |||||||||||||| | ||| | |||| |||||||||||| |||||||  || |||||||||||||    
T  5631752 acatcctcatcttcgctacacttactttactctcgcgttggctcttaaccgcccaacactccataccatacaacattgt 5631674  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 35043789 - 35043849
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactc 69  Q
    ||||| ||||||||||||||||||||||| |||  ||||| |||||||||| | |||||||    
T  35043789 acatcttcatctccgctacacttacttgactctcatgttggctcttaaccgtccaacactc 35043849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 119
Target Start/End: Original strand, 5258586 - 5258620
Alignment:
Q  85 tgttgtccgatagaactttcctttcaacttaagtg 119  Q
    |||||||||||||||||||||||||| ||||||||    
T  5258586 tgttgtccgatagaactttcctttcagcttaagtg 5258620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 24631188 - 24631224
Alignment:
Q  83 attgttgtccgatagaactttcctttcaacttaagtg 119  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  24631188 attgttgtccgatataactttcatttcaacttaagtg 24631224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 82655 - 82535
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaacat------------tgttgtccgata 96  Q
    ||||| ||||||||||| |||||||||||||||  ||||| |||||||||||| ||||||| ||| ||||||| ||            ||||||||||||    
T  82655 acatcctcatctccgctgcacttacttgattctcatgttggctcttaaccgcccaacactccgtaccatacaagatcgtcggtctgactgttgtccgata 82556  T
Q  97 gaactttcctttcaacttaag 117  Q
    |||||||||||||||||||||    
T  82555 gaactttcctttcaacttaag 82535  T

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Target: scaffold0570 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 2618 - 2692
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| ||||||||||||||||| |  |||||||||||||||||| |||||||  || |||||||||    
T  2618 acatcctcatctctgctacacttacttgattatcatgttgactcttaaccgcccaacactccataccatacaaca 2692  T

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Target: scaffold0570; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Original strand, 2709 - 2740
Alignment:
Q  88 tgtccgatagaactttcctttcaacttaagtg 119  Q
    ||||||||||||||||||||||||||||||||    
T  2709 tgtccgatagaactttcctttcaacttaagtg 2740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 25801 - 25853
Alignment:
Q  17 atctccgctacacttacttgattctagtgttgactcttaaccgccaaacactc 69  Q
    ||||| |||||||||||||||||||  |||||||||||||||||| |||||||    
T  25801 atctctgctacacttacttgattctcatgttgactcttaaccgcccaacactc 25853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 31394 - 31328
Alignment:
Q  17 atctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| |||||||||||||||||||  ||||||||||||||| || ||||||| ||| | |||||||    
T  31394 atctctgctacacttacttgattctcatgttgactcttaaccacccaacactccgtaccgtacaaca 31328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 11946 - 12020
Alignment:
Q  9 acatcatcatctccgctacacttacttgattctagtgttgactcttaaccgccaaacactctgtatcatacaaca 83  Q
    ||||| ||||||| ||||||| |||||||||||  |||||||||||| ||||| |||| | |||| ||| |||||    
T  11946 acatcctcatctctgctacacatacttgattctcatgttgactcttacccgcccaacattttgtaccatgcaaca 12020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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