View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3106_low_5 (Length: 464)

Name: NF3106_low_5
Description: NF3106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3106_low_5
NF3106_low_5
[»] chr6 (23 HSPs)
chr6 (18-456)||(5100337-5100774)
chr6 (18-333)||(5135559-5135875)
chr6 (167-389)||(5351846-5352065)
chr6 (175-305)||(5242120-5242249)
chr6 (180-325)||(5398520-5398660)
chr6 (26-142)||(5351747-5351855)
chr6 (20-71)||(5180635-5180686)
chr6 (18-71)||(5255975-5256028)
chr6 (18-71)||(5283100-5283153)
chr6 (180-244)||(5687599-5687661)
chr6 (167-241)||(5334567-5334640)
chr6 (18-80)||(5398415-5398477)
chr6 (371-458)||(2939463-2939549)
chr6 (18-71)||(5448990-5449043)
chr6 (18-80)||(5334469-5334532)
chr6 (241-333)||(5155662-5155755)
chr6 (18-80)||(5242332-5242392)
chr6 (240-289)||(2939370-2939419)
chr6 (18-62)||(5439392-5439436)
chr6 (242-272)||(5098691-5098721)
chr6 (371-441)||(5155594-5155663)
chr6 (24-62)||(5352700-5352738)
chr6 (344-388)||(5427325-5427369)
[»] scaffold1476 (1 HSPs)
scaffold1476 (39-104)||(163-228)
[»] chr3 (8 HSPs)
chr3 (13-69)||(47985223-47985279)
chr3 (13-69)||(47994510-47994566)
chr3 (13-69)||(48003797-48003853)
chr3 (13-69)||(48013082-48013138)
chr3 (180-271)||(47985060-47985151)
chr3 (180-271)||(47994347-47994438)
chr3 (180-271)||(48003634-48003725)
chr3 (180-271)||(48012919-48013010)
[»] chr2 (1 HSPs)
chr2 (35-104)||(22583209-22583280)


Alignment Details
Target: chr6 (Bit Score: 372; Significance: 0; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 456
Target Start/End: Complemental strand, 5100774 - 5100337
Alignment:
Q  18 atgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaagatagtaaagcgatggccgagcaaaaatcaattttatgatgactgc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  5100774 atgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaagatagtaatgcaatggccgagcaaaaatcaattttatgatgactgc 5100675  T
Q  118 taacaattgttttccacttatggcttacaggtcgctctgtcattgtctgatttttggtctgtagtttctagattttatcctgggtgaatttttgtattca 217  Q
    |||||||||||||||| || ||||||||| |  ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5100674 taacaattgttttccatttttggcttacaagctgctttgtcattgtctgatttttggtctgtagtttctagattttatccttggtgaatttttgtattca 5100575  T
Q  218 caaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatataccatttaaatgtcttttaacaaaatggactcaaatag-tatagca 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5100574 caaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatataccatttaaatgtcttttaacaaaatggactcaaatagttatagca 5100475  T
Q  317 tttaaatgtttagcaaaacttctgtagtcctaaataataggatatatagctgccaagaataaactctgatttgaacaatgagcatttttacctcagcatc 416  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  5100474 tttaaatgtttagc-aaacttctgtagtcctaaataataggatatatagctgccaagaagaaactctgatttgaacaatgagca-ttttacctcagcatc 5100377  T
Q  417 agattttatagttatatggctcaagctcatttcctttgct 456  Q
    || |||||||||||||||||||||||||||||||||||||    
T  5100376 aggttttatagttatatggctcaagctcatttcctttgct 5100337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 5135875 - 5135559
Alignment:
Q  18 atgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaagatagtaaagcgatggccgagcaaaaatcaattttatgatgactgc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5135875 atgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatggaagatagtaaagcaatggccgagcaaaaatcaattttatgatgactgc 5135776  T
Q  118 taacaattgttttccacttatggcttacaggtcgctctgtcattgtctgatttttggtctgtagtttctagattttatcctgggtgaatttttgtattca 217  Q
    |||||||||||||||| || ||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  5135775 taacaattgttttccatttttggcttacaagctgctctgtcattgtctgatttttggtctgtagtttctagattttattcttggtgaatttttgtattca 5135676  T
Q  218 caaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatataccatttaaatgtcttttaacaaaatggactcaaatag-tatagca 316  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5135675 aaaagagttctgaaagattctaatttgttctgttacaattcttccatgttatataccatttaaatgtcttttaacaaaatggactcaaatagttatagca 5135576  T
Q  317 tttaaatgtttagcaaa 333  Q
    |||||||||||||||||    
T  5135575 tttaaatgtttagcaaa 5135559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 167 - 389
Target Start/End: Original strand, 5351846 - 5352065
Alignment:
Q  167 atttttggtctgtagtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgt 266  Q
    |||||||| ||||||||||| ||||||||||  | ||||||||| ||||||||||||||  |||||||||||||||||||||||||||||| ||||||||    
T  5351846 atttttgg-ctgtagtttcttgattttatccatgttgaattttt-tattcacaaagagtggtgaaagattctaatttgttctgttacaattgttccatgt 5351943  T
Q  267 catataccatttaaatgtcttttaacaaaatggactcaaatag-tatagcatttaaatgtttagcaaaacttctgtagtcctaaataataggatatatag 365  Q
    ||| ||| ||||||| ||||||||||||||||| ||   |||| || |||||||||||||| || ||| |||||||| || | ||| |||| ||||||      
T  5351944 catgtactatttaaaagtcttttaacaaaatgggct-ttatagttacagcatttaaatgttaag-aaagcttctgtactcatgaatgatagcatatatga 5352041  T
Q  366 ctgccaagaataaactctgatttg 389  Q
    |||||||||| |||||||||||||    
T  5352042 ctgccaagaagaaactctgatttg 5352065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 175 - 305
Target Start/End: Complemental strand, 5242249 - 5242120
Alignment:
Q  175 tctgtagtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatatacc 274  Q
    |||||||||||||||||||||||  ||||||||||| |||| ||| |||||  |||||| |||||||||||| ||||| ||||||| |||||||| ||||    
T  5242249 tctgtagtttctagattttatccatggtgaattttt-tattgacagagagtggtgaaagtttctaatttgttatgttataattctttcatgtcatgtacc 5242151  T
Q  275 atttaaatgtcttttaacaaaatggactcaa 305  Q
    ||||||||||||||||||||||||| |||||    
T  5242150 atttaaatgtcttttaacaaaatgggctcaa 5242120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 180 - 325
Target Start/End: Original strand, 5398520 - 5398660
Alignment:
Q  180 agtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatataccattta 279  Q
    ||||||||||||||||||  ||||||||||| ||||||    ||||  |||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  5398520 agtttctagattttatccatggtgaattttt-tattca----gagtggtgaaagattctaatttgttctgttacaattcttccatgtcatgtactattta 5398614  T
Q  280 aatgtcttttaacaaaatggactcaaatag-tatagcatttaaatgt 325  Q
    || |||||||||| |||||||||| ||||| |||||||||| |||||    
T  5398615 aaagtcttttaactaaatggactc-aatagttatagcatttcaatgt 5398660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 26 - 142
Target Start/End: Original strand, 5351747 - 5351855
Alignment:
Q  26 aatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaagatagtaaagcgatggccgagcaaaaatcaattttatgatgactgctaacaatt 125  Q
    |||||||||||||||||||||||| ||||||| ||||        |||||||||||| ||||| |||||||||||||||||||| |||| ||||||||||    
T  5351747 aatcagaacagaaagaagaaaaactgagtggattgaa--------agatagtaaagcaatggcggagcaaaaatcaattttatggtgacggctaacaatt 5351838  T
Q  126 gttttccacttatggct 142  Q
    |||||||| || |||||    
T  5351839 gttttccatttttggct 5351855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 5180686 - 5180635
Alignment:
Q  20 gacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5180686 gacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 5180635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 5256028 - 5255975
Alignment:
Q  18 atgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 71  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5256028 atgatttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 5255975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 5283153 - 5283100
Alignment:
Q  18 atgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 71  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5283153 atgacttcactcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 5283100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 5687599 - 5687661
Alignment:
Q  180 agtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttg 244  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||    
T  5687599 agtttctagattttatcc--ggtgaatttttgtattcacaaagagttttgaaagattctaatttg 5687661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 5334567 - 5334640
Alignment:
Q  167 atttttggtctgtagtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaat 241  Q
    |||||||| ||| ||||||||||||||||||  ||||||||||||||||||||||||||  ||||||||||||||    
T  5334567 atttttgg-ctgaagtttctagattttatccatggtgaatttttgtattcacaaagagtggtgaaagattctaat 5334640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 5398415 - 5398477
Alignment:
Q  18 atgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaagatagtaaa 80  Q
    |||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||| |||||    
T  5398415 atgacttcaatcagaaaagaaagaagaaaagccgagttgaatgaatcaatgaaagatggtaaa 5398477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 371 - 458
Target Start/End: Original strand, 2939463 - 2939549
Alignment:
Q  371 aagaataaactctgatttgaacaatgagcatttttacctcagcatcagattttatagttatatggctcaagctcatttcctttgctac 458  Q
    ||||| |||||||||||||| || |||||||||| |||||||||||||| |  |||||||| | |||||||||||||||| |||||||    
T  2939463 aagaagaaactctgatttgagcagtgagcatttt-acctcagcatcagactccatagttatcttgctcaagctcatttccattgctac 2939549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 5448990 - 5449043
Alignment:
Q  18 atgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 71  Q
    ||||||||||||||||||||||||||||||| | ||| ||||||||||||||||    
T  5448990 atgacttcaatcagaacagaaagaagaaaaatcaagtagaatgaatcaatgaaa 5449043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 5334469 - 5334532
Alignment:
Q  18 atgacttcaatcagaacagaaagaagaaaaacc-gagtggaatgaatcaatgaaagatagtaaa 80  Q
    ||||||||||| |||||||||||||||||| || |||||||||||||| ||||||||| |||||    
T  5334469 atgacttcaatgagaacagaaagaagaaaagcctgagtggaatgaatctatgaaagatggtaaa 5334532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 241 - 333
Target Start/End: Complemental strand, 5155755 - 5155662
Alignment:
Q  241 tttgttctgttacaattcttccatgtcatataccatttaaatgtc-ttttaacaaaatggactcaaatag-tatagcatttaaatgtttagcaaa 333  Q
    |||||||||||||||||| |||||||||  |||||||||||| || ||||||| |||||||||  ||||| ||||| || |||||||||||||||    
T  5155755 tttgttctgttacaattcgtccatgtcacgtaccatttaaatatctttttaaccaaatggact-gaatagctatagtatctaaatgtttagcaaa 5155662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 5242392 - 5242332
Alignment:
Q  18 atgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaagatagtaaa 80  Q
    ||||||||||||||||| ||||  ||||||| ||||||||||| ||||||||||||| |||||    
T  5242392 atgacttcaatcagaacggaaa--agaaaaatcgagtggaatgtatcaatgaaagatggtaaa 5242332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 2939370 - 2939419
Alignment:
Q  240 atttgttctgttacaattcttccatgtcatataccatttaaatgtctttt 289  Q
    |||||||||||||| |||| |||||||||| |||||||||||| ||||||    
T  2939370 atttgttctgttacgattcatccatgtcatgtaccatttaaatatctttt 2939419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 5439392 - 5439436
Alignment:
Q  18 atgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaa 62  Q
    |||||||||||| |||||||||||||||||| ||| |||||||||    
T  5439392 atgacttcaatcggaacagaaagaagaaaaatcgaatggaatgaa 5439436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 272
Target Start/End: Original strand, 5098691 - 5098721
Alignment:
Q  242 ttgttctgttacaattcttccatgtcatata 272  Q
    |||||||||||||||||||||||||||||||    
T  5098691 ttgttctgttacaattcttccatgtcatata 5098721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 441
Target Start/End: Complemental strand, 5155663 - 5155594
Alignment:
Q  371 aagaataaactctgatttgaacaatgagcatttttacctcagcatcagattttatagttatatggctcaag 441  Q
    ||||| ||| |||||||||| ||||||||| |||||||||||||||||| |  |||||||| | |||||||    
T  5155663 aagaagaaaatctgatttgagcaatgagca-ttttacctcagcatcagactccatagttatcttgctcaag 5155594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 5352738 - 5352700
Alignment:
Q  24 tcaatcagaacagaaagaagaaaaaccgagtggaatgaa 62  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  5352738 tcaatcagaacagaaagaagaaaaatcgaatggaatgaa 5352700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 388
Target Start/End: Original strand, 5427325 - 5427369
Alignment:
Q  344 tcctaaataataggatatatagctgccaagaataaactctgattt 388  Q
    |||| ||| ||||||||||| ||||||||||| ||||||||||||    
T  5427325 tcctgaatgataggatatatggctgccaagaagaaactctgattt 5427369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1476 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 163 - 228
Alignment:
Q  39 agaagaaaaaccgagtggaatgaatcaatgaaagatagtaaagcgatggccgagcaaaaatcaatt 104  Q
    |||||||||| |||||||| |||||||||||||||| ||||| | ||||| |||||||||||||||    
T  163 agaagaaaaaacgagtggagtgaatcaatgaaagatggtaaaacaatggcggagcaaaaatcaatt 228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 47985279 - 47985223
Alignment:
Q  13 catcaatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatga 69  Q
    |||| |||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  47985279 catcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaatcaatga 47985223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 47994566 - 47994510
Alignment:
Q  13 catcaatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatga 69  Q
    |||| |||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  47994566 catcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaatcaatga 47994510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 48003853 - 48003797
Alignment:
Q  13 catcaatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatga 69  Q
    |||| |||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  48003853 catcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaatcaatga 48003797  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 48013138 - 48013082
Alignment:
Q  13 catcaatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatga 69  Q
    |||| |||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  48013138 catcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaatcaatga 48013082  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 47985151 - 47985060
Alignment:
Q  180 agtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatat 271  Q
    |||||||||||||||| |  ||| |||||||||| ||  |||||    |||||||||  |||||||| |||||||||||||||| |||||||    
T  47985151 agtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttccacgtcatat 47985060  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 47994438 - 47994347
Alignment:
Q  180 agtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatat 271  Q
    |||||||||||||||| |  ||| |||||||||| ||  |||||    |||||||||  |||||||| |||||||||||||||| |||||||    
T  47994438 agtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttccacgtcatat 47994347  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 48003725 - 48003634
Alignment:
Q  180 agtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatat 271  Q
    |||||||||||||||| |  ||| |||||||||| ||  |||||    |||||||||  |||||||| |||||||||||||||| |||||||    
T  48003725 agtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttccacgtcatat 48003634  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 48013010 - 48012919
Alignment:
Q  180 agtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatat 271  Q
    |||||||||||||||| |  ||| |||||||||| ||  |||||    |||||||||  |||||||| |||||||||||||||| |||||||    
T  48013010 agtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttccacgtcatat 48012919  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 22583280 - 22583209
Alignment:
Q  35 agaaagaagaaaaaccgagtggaatgaatcaatgaaagatagtaaagcgatggc--cgagcaaaaatcaatt 104  Q
    |||||||||||||| |||||||| |||||||||||||||| ||||| | |||||   |||||||||||||||    
T  22583280 agaaagaagaaaaatcgagtggagtgaatcaatgaaagatggtaaaacaatggcggagagcaaaaatcaatt 22583209  T

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