View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3106_low_6 (Length: 462)
Name: NF3106_low_6
Description: NF3106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3106_low_6 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 90 - 456
Target Start/End: Original strand, 3595883 - 3596255
Alignment:
| Q |
90 |
aagcttgacatgcagttcttatgggggtgagcgtaatcagagtgcctttgagatggtaagatgnnnnnnnnttgaatgtgaattgtaaaatacatagtac |
189 |
Q |
| |
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|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3595883 |
aagcttgacatgaagttcttatgggggtgagagtaatcagagtgcctttgagatggtaagatgaaaaaaa-ttgaatgtgaattgtaaaatacatagtac |
3595981 |
T |
|
| Q |
190 |
ttaattgcttatcttaattgtatttgtatttgt------ttaggtccatgctaaaagaagaaac-ttttgtggcaaaaagcttataatgatgctgtcttt |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||| |||||||||||| ||||||| |
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|
| T |
3595982 |
ttaattgcttatcttaattgtatttgtatttgtatttgtttaggtccatgctaagagaagaaaccttttgtggcaaaaaacttataatgatgttgtcttt |
3596081 |
T |
|
| Q |
283 |
gtcatggctaattcaaaattggctgaagagaaagctagatggtttgctgagcgaattcaaaatctgaaggataatggaaacattgatggtactctatatc |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3596082 |
gtcatggctaattcaaaattggctgaagagaaagctagatggtttgttgagcgaattcaaaatctgaaggataatggaaacattgatggtactccatatc |
3596181 |
T |
|
| Q |
383 |
tgaagtctctacatgatgtgattgctgatttgtatgttgaatatggagttgaagatgagagatgaagatgaaga |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||| |
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|
| T |
3596182 |
tgaagtctctacatgatgtgattgctgatttgtatgatgaatatggagttggagatgagagttgaagatgaaga |
3596255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 3595802 - 3595849
Alignment:
| Q |
43 |
gctggtaatgaggttccatcagtttgctggagtccctttggaaaggga |
90 |
Q |
| |
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||||||||||| |||||||||||||| ||||||||||||||||||||| |
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|
| T |
3595802 |
gctggtaatgaagttccatcagtttggtggagtccctttggaaaggga |
3595849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 90 - 440
Target Start/End: Complemental strand, 4388977 - 4388625
Alignment:
| Q |
90 |
aagcttgacatgcagttcttatgggggtgagcgtaatcagagtgcctttgagatggtaagatgnnnnnnnn-ttgaatgtgaattgtaaaatacatagta |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| ||| | |
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|
| T |
4388977 |
aagcttgacatgcagttcttatgggggtgagcgtaatcagagtgcatttgagatggtaagatgaaaaaaatattgaatgtcaattgtaaaatacctagca |
4388878 |
T |
|
| Q |
189 |
cttaattgcttatcttaattgtatttgtatttgtttaggtccatgctaaaagaagaaac-ttttgtggcaaaaagcttataatgatgctgtctttgtcat |
287 |
Q |
| |
|
|||| |||||||| ||||||||||||| ||||||||||||||||||||| | |||||| |||||||||||||| |||||||||||| ||||| |||||| |
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|
| T |
4388877 |
cttacttgcttatattaattgtatttgaatttgtttaggtccatgctaagaacagaaaccttttgtggcaaaaaacttataatgatgttgtctatgtcat |
4388778 |
T |
|
| Q |
288 |
ggctaattcaaaattggctgaagagaaagctagatggtttgctgagcgaattcaaaatctgaaggataatggaaacattgatggtactctatatctgaag |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||| | |||||||||||||||||||||||| |||||| ||||||| | ||||||| |
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|
| T |
4388777 |
ggctaattcaaaattggctgaagagaaagccagatggtttgttgagctagttcaaaatctgaaggataatggaagcattgaaggtactccaaatctgaaa |
4388678 |
T |
|
| Q |
388 |
tctctacatgatgtgattgctgatttgtatgttgaatatggagttgaagatga |
440 |
Q |
| |
|
|| |||||||||||||||||| ||||||||| |||||||||||||| |||||| |
|
|
| T |
4388677 |
tccctacatgatgtgattgcttatttgtatgatgaatatggagttggagatga |
4388625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 90 - 440
Target Start/End: Complemental strand, 4376282 - 4375931
Alignment:
| Q |
90 |
aagcttgacatgcagttcttatgggggtgagcgtaatcagagtgcctttgagatggtaagatgnnnnnnnn-ttgaatgtgaattgtaaaatacatagta |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
4376282 |
aagcttgacatgcagttcttatgggggtgatcataatcggagtgcatttgagatggtaagatgagaaaaatattgaatgtgaattgtaaaatacatagca |
4376183 |
T |
|
| Q |
189 |
cttaattgcttatcttaattgtatttgtatttgtttaggtccatgctaaaagaagaaact-tttgtggcaaaaagcttataatgatgctgtctttgtcat |
287 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||| |||||||||| || |||||||||| |
|
|
| T |
4376182 |
cttacttgcttatgctaattgtatttgtatttgtt-aggtccatgctaagagaagaaactctttgtggcaaaatatttataatgattctctctttgtcat |
4376084 |
T |
|
| Q |
288 |
ggctaattcaaaattggctgaagagaaagctagatggtttgctgagcgaattcaaaatctgaaggataatggaaacattgatggtactctatatctgaag |
387 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||| ||||| | ||||||||||||||||||||||||||| ||| ||||||| |||||| ||| |
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|
| T |
4376083 |
ggctaattcaaaattggctgaagacaaagcaagatggtttattgagctacttcaaaatctgaaggataatggaaacagtgaaggtactccatatcttaag |
4375984 |
T |
|
| Q |
388 |
tctctacatgatgtgattgctgatttgtatgttgaatatggagttgaagatga |
440 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
4375983 |
tctctacatgacgtgattgctgatttgtatgatgaatatggagttggagatga |
4375931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 90 - 452
Target Start/End: Complemental strand, 4383856 - 4383509
Alignment:
| Q |
90 |
aagcttgacatgcagttcttatgggggtgagcgtaatcagagtgcctttgagatggtaagatgnnnnnnnn-ttgaatgtgaattgtaaaatacatagta |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
4383856 |
aagcttgacatgcagttcttatgggggtgagcgtaatcggagtgccttcgagatggtaagatgaaaaaaatattgaatgtgaattgtaaaatacttagta |
4383757 |
T |
|
| Q |
189 |
ct--taattgcttatcttaattgtatttgtatttgtttaggtccatgctaaaagaagaaac-ttttgtggcaaaaagcttataatgatgctgtctttgtc |
285 |
Q |
| |
|
| || || ||||||||||||||| | |||||||| |||| |||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4383756 |
gtagtacctgattatcttaattgtatctatatttgttcaggttcatgctaagagaagaaaccttttgtggcaaaaggcttataatgatgctgtctttgtc |
4383657 |
T |
|
| Q |
286 |
atggctaattcaaaattggctgaagagaaagctagatggtttgctgagcgaattcaaaatctgaaggataatggaaacattgatggtactctatatctga |
385 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| || ||| | |||| |||||||| ||||| | ||||| |||||| | |
|
|
| T |
4383656 |
atggctaattcaaaattggctgtagagaaagctagaagggttgtttggcga------------------aatggaaaaattgaagctactcgatatctaa |
4383575 |
T |
|
| Q |
386 |
agtctctacatgatgtgattgctgatttgtatgttgaatatggagttgaagatgagagatgaagatg |
452 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| |||||||||||||| ||| || ||||||||||| |
|
|
| T |
4383574 |
agtctcaacgtgatgtgattgctgatttgtatgatgaatatggagttggagacga-agatgaagatg |
4383509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 91 - 308
Target Start/End: Original strand, 4415565 - 4415781
Alignment:
| Q |
91 |
agcttgacatgcagttcttatgggggtgagcgtaatcagagtgcctttgagatggtaagatg--nnnnnnnnttgaatgtgaattgtaaaatacatagta |
188 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||| |||||| ||||||||||||||| || || |
|
|
| T |
4415565 |
agcttgacatgtagttcttatgggggtgagcataatcagagtgcctacgagatggtaagatgataaaaaacattgaatatgaattgtaaaatacctacta |
4415664 |
T |
|
| Q |
189 |
cttaattgcttatcttaattgtatttgtatttgtttaggtccatgctaaaagaagaaa-cttttgtggcaaaaagcttataatgatgctgtctttgtcat |
287 |
Q |
| |
|
| |||||||| ||||||||||||||||| || |||||||| ||||| |||||||| | |||| ||||||| | |||| ||| ||| |||||||| |
|
|
| T |
4415665 |
c----ttgcttatattaattgtatttgtattggtataggtccacgctaagagaagaaaccgtttgaggcaaaagacccgtaataatgttgtttttgtcat |
4415760 |
T |
|
| Q |
288 |
ggctaattcaaaattggctga |
308 |
Q |
| |
|
|| |||||||||||| ||||| |
|
|
| T |
4415761 |
ggttaattcaaaattagctga |
4415781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 5726559 - 5726616
Alignment:
| Q |
92 |
gcttgacatgcagttcttatgggggtgagcgtaatcagagtgcctttgagatggtaag |
149 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| | |||||||| ||||||||||| |
|
|
| T |
5726559 |
gcttggcatgcagttcttatgggggtgagcgtaataaaagtgccttcgagatggtaag |
5726616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 4376382 - 4376318
Alignment:
| Q |
26 |
ctgttgccgtaatgacagctggtaatgaggttccatcagtttgctggagtccctttggaaaggga |
90 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
4376382 |
ctgtagccgtaacgacagctggtaatgaggttccatcagtttggtggagcgcctttggagaggga |
4376318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 4359346 - 4359286
Alignment:
| Q |
92 |
gcttgacatgcagttcttatgggggtgagcgtaatcagagtgcctttgagatggtaagatg |
152 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| || ||||| |||||||||||||| |
|
|
| T |
4359346 |
gcttgacaggcagttcttatgggggtgagcataatcggaaggccttcgagatggtaagatg |
4359286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 427
Target Start/End: Original strand, 4415876 - 4415931
Alignment:
| Q |
372 |
tactctatatctgaagtctctacatgatgtgattgctgatttgtatgttgaatatg |
427 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
4415876 |
tactccatatctgaagtctctatatgatgtgattgctgatttgcgtgatgaatatg |
4415931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 4389081 - 4389031
Alignment:
| Q |
14 |
atatgggttattctgttgccgtaatgacagctggtaatgaggttccatcag |
64 |
Q |
| |
|
|||||||| || |||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
4389081 |
atatgggtcatcctgtagccgtaatgacggctggtaatgaggttccatcag |
4389031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 4359168 - 4359124
Alignment:
| Q |
270 |
tgatgctgtctttgtcatggctaattcaaaattggctgaagagaa |
314 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||| ||| |||| |
|
|
| T |
4359168 |
tgatgttgtttttgtcatggctaattcaaaattggccgaaaagaa |
4359124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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