View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3106_low_8 (Length: 402)
Name: NF3106_low_8
Description: NF3106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3106_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 384
Target Start/End: Complemental strand, 6680611 - 6680238
Alignment:
| Q |
11 |
atcatcatggtttaatcgatttagaagcagtttttctttgagaaatagttactcaaatgaaatattagttagaagcaggcagctttaacttcaattatat |
110 |
Q |
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| T |
6680611 |
atcatcatggtttaatcgatttagaagcagtttttctttgagaaataattactcaaatgaaatattagttagaagcaggcagctttaacttcaattatat |
6680512 |
T |
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| Q |
111 |
tttctctttttggggtaggaggggttgggttgtaattttcagaatgttattatagggaaaaatagtggcatacatcaatcatagatttagagattgctta |
210 |
Q |
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| T |
6680511 |
tttctctttttggggtaggaggggttgggttgtaattttcagaatgttattatagggaaaaatagtggcatacatcaatcatagatttagagattgcttg |
6680412 |
T |
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| Q |
211 |
ctcatccaaaattggtagcaaaaaagtgggatgaggaggctacatttttccctttcaaagagagccttttgtatagaaaagtaggagtatttggaagtgg |
310 |
Q |
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| T |
6680411 |
ctcatccaaaattggtagcaaaaaagtgggatgaggaggctacatttttccctttcaaagagagccttttgtatagaaaagtaggagtatttggaagtgg |
6680312 |
T |
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| Q |
311 |
ttggtagatgaggtgaaggaagaagaaatgaaagaatggaggaagatgatatgttagagctttggccgaaggcc |
384 |
Q |
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| T |
6680311 |
ttggtagatgaggtgaaggaagaagaaatgaaagaatggaggaagatgatatgttagagctttggccgaaggcc |
6680238 |
T |
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