View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_high_10 (Length: 545)
Name: NF3107_high_10
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 98 - 527
Target Start/End: Complemental strand, 44965850 - 44965421
Alignment:
| Q |
98 |
ccaattttgaaacaaattttacctctggaattgaaggatctcttgaaatgaagaatagcactttgaattccatcatgctgctgcaacagcgtatcatcac |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44965850 |
ccaattttgaaacaaattttacctctggaattgaaggatctcttgcaatgaagaatagcactttgaattccatcatgctgctgcaacaacgtatcatcac |
44965751 |
T |
|
| Q |
198 |
tcctgttcgccggagaactggctccggccaccgtacccgatgacctactcttacccaaatgcttcgttaccactctcatcccagccggaaaactcccctg |
297 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44965750 |
tcctgttcgccggagaactagctccggccaccgtacccgatgacctactcttacccaaatgcttcgttaccactctcatcccagccggaaaactcccctg |
44965651 |
T |
|
| Q |
298 |
tttctctttcctcaaagagccaaccgccggtgaagacgacggcgaagccgtcactgtcatcccctcgccggagaatttcaccttatcaccatacctcttc |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44965650 |
tttctctttcctcaaagagccaaccgccggtgaagacgacggtgaagctgtcactgtcatcccctcgccggagaatttcaccttatcaccatacctcttc |
44965551 |
T |
|
| Q |
398 |
gaaaccttaacataaagaggcttaatcagcttcaaatatttctgcaaaatctcctttgaaactcgctctgttttaggttcctctgttccttgattccgaa |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44965550 |
gaaaccttaacataaagaggcttaatcagcttcaaatatttctgcaaaatctcctttgaaactcgctctgttttaggttcctctgttccttgattccgaa |
44965451 |
T |
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| Q |
498 |
ttttgctaccaaagcttctagtgctgttat |
527 |
Q |
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||||||||||||||||||| |||||||||| |
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| T |
44965450 |
ttttgctaccaaagcttcttgtgctgttat |
44965421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 256
Target Start/End: Complemental strand, 28698056 - 28697958
Alignment:
| Q |
157 |
actttgaattccatcatgctgctgcaacagcgtatcatcactcctgttcgccggagaactggctccggccaccgtacccgatgacctactcttacccaaa |
256 |
Q |
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|||||| |||||||||| |||||||||| | | ||||||||| | |||||||||| || |||||||||| ||| ||| |||||||||||||||||| |
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| T |
28698056 |
actttggattccatcatcttgctgcaacaacat-tcatcactcttattcgccggagtaccaactccggccacggtatccggcgacctactcttacccaaa |
28697958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 2502611 - 2502541
Alignment:
| Q |
127 |
attgaaggatctcttgaaatgaagaatagcactttgaattccatcatgctgctgcaacagcgtatcatcac |
197 |
Q |
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|||||||||||||||| | || | ||| || | |||||||||||| ||||||||||| |||| |||||||| |
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| T |
2502611 |
attgaaggatctcttgcagtgtaaaatggctccttgaattccatcttgctgctgcaaaagcgaatcatcac |
2502541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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