View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_high_12 (Length: 476)
Name: NF3107_high_12
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_high_12 |
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| [»] scaffold0143 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 33479565 - 33479904
Alignment:
| Q |
1 |
tttgaatattttatttataattccataaatgtttatgagattctttgtgtcttagttgctttaggagaccgtcgttggattttctaggctgggagttatg |
100 |
Q |
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| T |
33479565 |
tttgaatattttatttataattccataaatgtttatgagattctttgtgtcttagttgctttaggagaccgtcgttggattttctaggctgggagttatg |
33479664 |
T |
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| Q |
101 |
atcatgtagagtaaagatgaagtatgctacattttgtaatgactagtacacccacttgttaagatggttcatgttcttgctcatgccaaatttttaggta |
200 |
Q |
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| T |
33479665 |
atcatgtagagtaaagatgaagtatgctacattgtgtaatgactagtacacccacttgttaagatggttcatgttcttgctcatgccaaatttttaggta |
33479764 |
T |
|
| Q |
201 |
gatgaatgagg--ttttttatcttgtcttgatattaattatagaaataggtcataatctttacttgatattaattatggaaatatgtcataatctttatt |
298 |
Q |
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| T |
33479765 |
gatgagtgaggttttttttatcttgtcttgatattaattatagaaatatgtcataatctttacttgatattaattatggaaatatgtcataatctttatt |
33479864 |
T |
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| Q |
299 |
aaagtattttagatgcatatgactttaggtaataacatca |
338 |
Q |
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| T |
33479865 |
aaagtattttatatgcatatgactttaggtaataacatca |
33479904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 33480014 - 33480063
Alignment:
| Q |
337 |
caataagaaacttttatatacttgtcgaagaacataagtgttggtcacag |
386 |
Q |
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| T |
33480014 |
caatcagaaacttttatatacttgtcggagaacataagagttggtcacag |
33480063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0143 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: scaffold0143
Description:
Target: scaffold0143; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 249 - 338
Target Start/End: Complemental strand, 6865 - 6776
Alignment:
| Q |
249 |
tcataatctttacttgatattaattatggaaatatgtcataatctttattaaagtattttagatgcatatgactttaggtaataacatca |
338 |
Q |
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| T |
6865 |
tcataatctttacttgatattaattatggaaatatgtcataatctttattaaagtattttatatgcatatgactttaggtaataacatca |
6776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0143; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 6666 - 6617
Alignment:
| Q |
337 |
caataagaaacttttatatacttgtcgaagaacataagtgttggtcacag |
386 |
Q |
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| T |
6666 |
caatcagaaacttttatatacttgtcggagaacataagagttggtcacag |
6617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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