View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_high_14 (Length: 460)
Name: NF3107_high_14
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 13 - 442
Target Start/End: Original strand, 1747297 - 1747720
Alignment:
| Q |
13 |
aatatgcacaaatgaaaccttctcaataacctgctgattttattatcattttcaaatgtcaattcccacgggcaagcatccaaattattcacccaagata |
112 |
Q |
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| T |
1747297 |
aatatgcacaaacgaaaccttctcaataacctgctgattctattatcattctcaaatgtcaattcccacgggcaagcatccaaattattcacccaagata |
1747396 |
T |
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| Q |
113 |
gagcattctttgagtcaaactcaattgtgatctcaccatgtttaagccataaccactaacatatatatatagctccaatgcaaacaacacatctaagaat |
212 |
Q |
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| T |
1747397 |
gagcattctttgagtcaaactcaattgtgatctcaccatgtttaagccacaaccactaac----atatatagctccaatgcaaacaacacatctaagaat |
1747492 |
T |
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| Q |
213 |
tcagcttgaatttctcgtgtttgattagtattttttaagatgacatgagtaaacaagtttttatgtaatattttgaccatcaaacattgcaggtttatgt |
312 |
Q |
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| T |
1747493 |
tcagcttgaatttatcgtgtttgattagta-tttttaagatgacatgagtaaacaa-tttttatgtaatattttgaccatcaaacattgcaggtttatgt |
1747590 |
T |
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| Q |
313 |
gctagtaatactannnnnnnnnnagggaatgtgctagtaatattttgagattagagaaatcaagaattttattcaactaatattttattacattattcta |
412 |
Q |
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| T |
1747591 |
gctagtaatactattttttttttagggaatgtgctagtaatattttgagattagagaaatcaagaattttattcaactaatattttattacattattcta |
1747690 |
T |
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| Q |
413 |
ttatttagagtttgttgtgatggtggaact |
442 |
Q |
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| T |
1747691 |
ttatttagagtttgttgggatggtggaact |
1747720 |
T |
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