View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_high_2 (Length: 808)
Name: NF3107_high_2
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 686; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 686; E-Value: 0
Query Start/End: Original strand, 8 - 789
Target Start/End: Original strand, 14868716 - 14869497
Alignment:
| Q |
8 |
ccaagaatataccaattcattcatgttctgtaaccaaaattcattcattcatgcatgctctcttttgtctttgattatgcactgactagaannnnnnnnn |
107 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14868716 |
ccaataatataccaattcattcatgttctgtaaccaaaattcattcgttcatgcatgctctcttttgtctttgattatgcactgactagaacatcatcat |
14868815 |
T |
|
| Q |
108 |
nnnnnnnngggtaagnnnnnnncacattttctcttcctcttatcaacctttgccttaaaacaaaaaccagattctgatggaatcccttggagtcaaagtt |
207 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14868816 |
catcatcagggtaagaaaaaaacacattttctcttcctcttatcaacctttgccttaaaacaaaaaccagattctgatggaatcccttggagtcaaagtt |
14868915 |
T |
|
| Q |
208 |
gaagaagaaacaatgctaaaagctgtttttcttccttttatatcaaaaagtcacctcattttcgtagtagacatagcaaggctttttgctatgcatggtg |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14868916 |
gaagaagaaacaatgctaaaagctgtttttcttccttttatatcaaaaagtcacctcatttttgtagtagacatagcaaggctttttgctatgcatggtg |
14869015 |
T |
|
| Q |
308 |
tggatgtaaccataatcaccacaccatcaaatgcagccatttttcaaacctcaatcgaccgcgattctagccgcggtcgtcccattagaactcatgttgt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14869016 |
tggatgtaaccataatcaccacaccatcaaatgcagccatttttcaaacctcaatcgaccgcgattctagccgcggtcgtcccattagaactcatgttgt |
14869115 |
T |
|
| Q |
408 |
catgtttccacaagtacctggtttggcacaaggaatggaaagcttcaacgccgacactcctaatgagatacgttcgaaaatctatcagggactcatcatt |
507 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14869116 |
catgtttccacaagtacctggtttggcacgaggaatggaaagcttcaacgccgacactcctaatgagatacgttcgaaaatctatcagggactcatcatt |
14869215 |
T |
|
| Q |
508 |
ctccaagagcaattcaaacaacaattccgtgacatgaaacctgatttcatagtcactgacatgttctatccttggagtgttgatattgctgatgaattgg |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14869216 |
ctccaagagcaattcaaacaacaattccgtgacatgaaacctgatttcatagtcactgacatgttctatccttggagtgttgatgttgctgatgaattgg |
14869315 |
T |
|
| Q |
608 |
gaattccaaggttaatttgcattagtggaagttactttgctcattctgcaatgaactctattgaacacttctcacctcaggcgaaagttaaattgaatag |
707 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14869316 |
gaattccaaggttaatttgtattagtggaagttactttgctcattctgcaatgaactctattgaacacttctcacctcaggcgaaagttaaattgaatag |
14869415 |
T |
|
| Q |
708 |
cgagagttttcttcttcctgggttgcctcacaaggtggaaatgaaacgtttacaacttccggattggcttagagcaccgaat |
789 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14869416 |
cgagagttttcttcttcctgggttgcctcacaaggtggaaatgaaacgtttacaacttccggattggcttagagcaccgaat |
14869497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 162 - 785
Target Start/End: Complemental strand, 16909800 - 16909175
Alignment:
| Q |
162 |
ttaaaacaaaaaccagattctgatggaatcccttggagtcaaagttgaagaagaaacaatgctaaaagctgtttttcttccttttatatcaaaaa--gtc |
259 |
Q |
| |
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||||||||||| | | |||| ||||||||| |||| || ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| |
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| T |
16909800 |
ttaaaacaaaatctaatttctaatggaatcctttggtgtgaaagttgaagaagaaacaatgttaaaagctgtttttcttccctttatatcaaaaaaagtc |
16909701 |
T |
|
| Q |
260 |
acctcattttcgtagtagacatagcaaggctttttgctatgcatggtgtggatgtaaccataatcaccacaccatcaaatgcagccatttttcaaacctc |
359 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16909700 |
acctcattttcgtagtagacatagcaaggctttttgctatgcataatgtggatgttaccataatcaccacaccagcaaatgcagccatttttcaaacctc |
16909601 |
T |
|
| Q |
360 |
aatcgaccgcgattctagccgcggtcgtcccattagaactcatgttgtcatgtttccacaagtacctggtttggcacaaggaatggaaagcttcaacgcc |
459 |
Q |
| |
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||||||| |||||| || |||||||| ||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||| ||||| || |
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| T |
16909600 |
catcgaccacgattcaagtcgcggtcggtccattagaactcacattgtcaagtttccacaagtacctggtttgccacaaggaatggaaagtttcaatgct |
16909501 |
T |
|
| Q |
460 |
gacactcctaatgagatacgttcgaaaatctatcagggactcatcattctccaagagcaattcaaacaacaattccgtgacatgaaacctgatttcatag |
559 |
Q |
| |
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||||||||||| || ||| ||| ||||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |
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| T |
16909500 |
gacactcctaaagacataatttccaaaatctatcagggacttgccattctccaagagcaattcacacaactatttcgtgacatgaaacctgatttcatag |
16909401 |
T |
|
| Q |
560 |
tcactgacatgttctatccttggagtgttgatattgctgatgaattgggaattccaaggttaatttgcattagtggaagttactttgctcattctgcaat |
659 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| |
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|
| T |
16909400 |
tcactgacatgttttatccttggagtgttgatgttgctgatgaattgggaattccaaggttgatttgtattggtggaagttactttgctcattctgcaat |
16909301 |
T |
|
| Q |
660 |
gaactctattgaacacttctcacctcaggcgaaagttaaattgaatagcgagagttttcttcttcctgggttgcctcacaaggtggaaatgaaacgttta |
759 |
Q |
| |
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||||||||||||||| || |||||| || |||||||||| |||||||| |||||||| |||||||||||||||||||| |||||||||| ||||| |
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| T |
16909300 |
gaactctattgaacaatttgaacctcatgccaaagttaaatcgaatagcgtaagttttctgcttcctgggttgcctcacaacgtggaaatgacgcgtttg |
16909201 |
T |
|
| Q |
760 |
caacttccggattggcttagagcacc |
785 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
16909200 |
caacttccggattggcttagagcacc |
16909175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 277 - 329
Target Start/End: Original strand, 12611241 - 12611293
Alignment:
| Q |
277 |
gacatagcaaggctttttgctatgcatggtgtggatgtaaccataatcaccac |
329 |
Q |
| |
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||||| ||||| || ||||||||||||||||||||| | |||||||||||||| |
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|
| T |
12611241 |
gacatggcaagactatttgctatgcatggtgtggatatcaccataatcaccac |
12611293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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