View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_high_24 (Length: 391)
Name: NF3107_high_24
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 12844182 - 12843807
Alignment:
| Q |
1 |
tgaaaactttcgcacttaccatgtctacattcatgaaagccaaatcaacttcgaagtcaccgttaccgccactgcttccgtcgtaacaaactggctccaa |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12844182 |
tgaaaaccttcgcacttaccatgtctacattcatgaaagccaaatcaacttcgaagtcaccgttaccgccacagcttccgtcgtaacaaactggctccaa |
12844083 |
T |
|
| Q |
101 |
agtatgctcaatcatcattttcaatccctccgccaccttcaataccttcgccgcaaccgtaatctccgtaaccgtaatctcgttgtcggccttggcgttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
12844082 |
agtatgctcaatcatcattttcaatccctccgccaccttcaataccttcgccgcaaccgtaatctctgtaaccgtaatctcattgtcggccttggcgttc |
12843983 |
T |
|
| Q |
201 |
aatggactcccggcaaccttgatcctcccgccgacacgctacagttatgcatcagtggcagctgtcttatcttccacctctctcgcgcagatatgattcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
12843982 |
aatggactcccggcaaccttgatcctcccgccgacacgctacagttatgcatcagtggcagctgtcttatcttccacctctctctcgccgatatgattcc |
12843883 |
T |
|
| Q |
301 |
ggtcagtctctgcaattttctccgtcatcctaagaacaccttcgttggattctggaacgctgctgatcgtagaagg |
376 |
Q |
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| T |
12843882 |
ggttagtctctgcaactttctccgtcatcctaagaacaccttcgttggattctggaacgctgctgatcgtagaagg |
12843807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 164 - 372
Target Start/End: Original strand, 12861462 - 12861670
Alignment:
| Q |
164 |
ctccgtaaccgtaatctcgttgtcggccttggcgttcaatggactcccggcaaccttgatcctcccgccgacacgctacagttatgcatcagtggcagct |
263 |
Q |
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| T |
12861462 |
ctccgcaactgtaatcttgttgtcggcctcggcgttcaatggactaaccgcaaccttgatcctcccgccgacacgctacagttatgcatcggtggcagct |
12861561 |
T |
|
| Q |
264 |
gtcttatcttccacctctctcgcgcagatatgattccggtcagtctctgcaattttctccgtcatcctaagaacaccttcgttggattctggaacgctgc |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12861562 |
gtcttatcttccacctctctcgcgcagatatgattccggtcagtctctgcaattttctccgtcatcctaagaacaccttcgttggattctggaacgctgc |
12861661 |
T |
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| Q |
364 |
tgatcgtag |
372 |
Q |
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|||||||| |
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| T |
12861662 |
agatcgtag |
12861670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 12861335 - 12861467
Alignment:
| Q |
1 |
tgaaaactttcgcacttaccatgtctacattcatgaaagccaaatcaacttcgaagtcaccgttaccgccactgcttccgtcgtaacaaactggctccaa |
100 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
12861335 |
tgaaaaccttcgcacttaccatgtctacattcacgaaagccaaatcaacttcgaagtcaccgttaccgccactgcttccgttgtaacaaactggctccgt |
12861434 |
T |
|
| Q |
101 |
agtatgctcaatcatcattttcaatccctccgc |
133 |
Q |
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| ||||||| ||||||| |||||| ||||||| |
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| T |
12861435 |
actatgctcgatcatcaccttcaatacctccgc |
12861467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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