View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3107_high_25 (Length: 390)
Name: NF3107_high_25
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_high_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 36196596 - 36196941
Alignment:
| Q |
1 |
acagacgaaattactgcaagaaacaggggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36196596 |
acagacgaaattactgcaagaaacaggggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatctt |
36196695 |
T |
|
| Q |
101 |
agttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36196696 |
agttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatct |
36196795 |
T |
|
| Q |
201 |
ctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaacttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36196796 |
ctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaacttgt |
36196895 |
T |
|
| Q |
301 |
agatgtgagcaatatcttgcaaccattatgatcttcaccaaagggg |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36196896 |
agatgtgagcaatatcttgcaaccattatgatcttcaccaaagggg |
36196941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 36188279 - 36188633
Alignment:
| Q |
1 |
acagacgaaattactgcaagaaacaggggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatctt |
100 |
Q |
| |
|
||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36188279 |
acagaggaaattactgcaagaaaaaggg-aaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatctt |
36188377 |
T |
|
| Q |
101 |
agttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36188378 |
agttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatct |
36188477 |
T |
|
| Q |
201 |
ctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaacttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36188478 |
ctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaacttgt |
36188577 |
T |
|
| Q |
301 |
agatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatct |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36188578 |
agatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatct |
36188633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 36209720 - 36210066
Alignment:
| Q |
1 |
acagacgaaattactgcaagaaacaggggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatctt |
100 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36209720 |
acagaggaaattactgcaagaaacaagggaaatcttaccataatggatacatgtatcggacataatacaaacacaagcatttgacagaatacaaaatctt |
36209819 |
T |
|
| Q |
101 |
agttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatct |
200 |
Q |
| |
|
|||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
36209820 |
agttcatctataactgcaaa-gcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcgacttcagattttcatcatct |
36209918 |
T |
|
| Q |
201 |
ctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaacttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36209919 |
ctgctacaaacgctcttgttggaagaaaatcatgccatgtctct--------tatcaatttatgaaccttcatttgcttggataaaacctccaaacttgt |
36210010 |
T |
|
| Q |
301 |
agatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatct |
356 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36210011 |
agatgtcagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatct |
36210066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 66 - 372
Target Start/End: Original strand, 36207688 - 36207995
Alignment:
| Q |
66 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaa |
164 |
Q |
| |
|
||||| ||||||||||| |||||| | |||||||||||||||| || | | ||||| ||| | | |||||||||||||||||||||||||||||| | | |
|
|
| T |
36207688 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatatacaacaacaaat-cacatgtgaacctctaatctctccaacatggtgttttcgata |
36207786 |
T |
|
| Q |
165 |
cgatgtgcatgtttggacttatgattttcatcatctctgctacaaacgctcttgttggaagagaa-tcatgtcatgtctctcacaattgtatcaatttat |
263 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||| || | ||| | || |||||||||||| ||||||||||||||| | |||||||| ||||||| |
|
|
| T |
36207787 |
tgatgtgcatgtttggacttcaaattttcatcaactctacttctaacacactggttggaagagaaatcatgtcatgtctctgataattgtattaatttat |
36207886 |
T |
|
| Q |
264 |
gaaccttcatttgctcagataaaacctccaaacttgtagatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatcttactaaa |
363 |
Q |
| |
|
||||||||| || | |||||| ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
36207887 |
caaccttcatatgtttggataaagcctccgagcttgtagatgtcagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatctcacctaa |
36207986 |
T |
|
| Q |
364 |
atcaagtct |
372 |
Q |
| |
|
||||||||| |
|
|
| T |
36207987 |
atcaagtct |
36207995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 159 - 372
Target Start/End: Original strand, 36202310 - 36202523
Alignment:
| Q |
159 |
tccaaacgatgtgcatgtttggacttatgattttcatcatctctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaa |
258 |
Q |
| |
|
||||||| |||| ||||||| ||||| ||||||||||||||||||| |||||||||| || ||||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
36202310 |
tccaaactatgttcatgtttcgacttcagattttcatcatctctgcttcaaacgctctagtaagaagagattcatttcatgtctctgacaattgtatcaa |
36202409 |
T |
|
| Q |
259 |
tttatgaaccttcatttgctcagataaaacctccaaacttgtagatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatctta |
358 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| | | |
|
|
| T |
36202410 |
tttatgaaccttcatttctttggataaaacctccaaatttgtagatgtcagcaatatcttgcaacccttatgatcttcaccaaagggcataccaatttca |
36202509 |
T |
|
| Q |
359 |
ctaaaatcaagtct |
372 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
36202510 |
cttaaatcaagtct |
36202523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 66 - 372
Target Start/End: Original strand, 36184500 - 36184811
Alignment:
| Q |
66 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctatacctacaaaagcacttctcaac----ctctaatctctccaacatggtgttttc |
160 |
Q |
| |
|
||||| ||||||||||| |||||| | ||||||||||||||||||| | | || ||||||||| | ||| ||||||||||||||||||||||| ||| |
|
|
| T |
36184500 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatctacaacaac-aaagcacttgtgaacctctctctaatctctccaacatggtgtcttc |
36184598 |
T |
|
| Q |
161 |
caaacgatgtgcatgtttggacttatgattttcatcatctctgctacaaacgctcttgttggaag-agaatcatgtcatgtctctcacaattgtatcaat |
259 |
Q |
| |
|
| | ||| | ||||||||||||| ||||||||||| ||||||| | ||| |||| |||||||| | ||||||||||||||||| | |||||||||| | |
|
|
| T |
36184599 |
cgtatgatattcatgtttggacttcagattttcatcaactctgcttctaacactctagttggaagaaaaatcatgtcatgtctctgataattgtatcact |
36184698 |
T |
|
| Q |
260 |
ttatgaaccttcatttgctcagataaaacctccaaacttgtagatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatcttac |
359 |
Q |
| |
|
|||| ||||||||| || | ||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36184699 |
ttatcaaccttcatatgtttggataatgcctccgagcttgttgatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatctcac |
36184798 |
T |
|
| Q |
360 |
taaaatcaagtct |
372 |
Q |
| |
|
||||||||||| |
|
|
| T |
36184799 |
ctaaatcaagtct |
36184811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 166 - 356
Target Start/End: Original strand, 36213218 - 36213408
Alignment:
| Q |
166 |
gatgtgcatgtttggacttatgattttcatcatctctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatga |
265 |
Q |
| |
|
||||||||||||||||||| ||||| |||| ||||||| ||||| || | ||| ||||||||||||||||||||||| | ||||| |||||||||||| |
|
|
| T |
36213218 |
gatgtgcatgtttggacttcaaatttttatcaactctgcttcaaacactttagtttgaagagaatcatgtcatgtctctgataattgaatcaatttatga |
36213317 |
T |
|
| Q |
266 |
accttcatttgctcagataaaacctccaaacttgtagatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatct |
356 |
Q |
| |
|
|||||||||| | ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36213318 |
gccttcatttgattggataaaacctccacacttgtagatgtgagtaatatcttgcaaccattatgatcttcaccaaaggggacaccaatct |
36213408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 91 - 356
Target Start/End: Original strand, 36200857 - 36201122
Alignment:
| Q |
91 |
acaaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgatt |
190 |
Q |
| |
|
|||||||||||||||||||| ||| ||| | |||| | |||||| |||||| ||||||||||||| |||||| | |||||||||||||| ||| || |
|
|
| T |
36200857 |
acaaaatcttagttcatctacaccaacaca-gcacctgtcaaccactaatcactccaacatggtgctttccatatgatgtgcatgtttgaactacaagtt |
36200955 |
T |
|
| Q |
191 |
ttcatcatctctgctacaaacgctcttgttggaagagaa-tcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacc |
289 |
Q |
| |
|
||| ||| ||||||| ||||| ||| || |||| |||| |||| |||||||||| | || ||| ||||||||||||| ||||||| || ||||||||| |
|
|
| T |
36200956 |
ttcgtcaactctgcttcaaacagtctagtaggaaaagaaatcatatcatgtctctgataactgtgtcaatttatgaactgtcatttgttcggataaaacc |
36201055 |
T |
|
| Q |
290 |
tccaaacttgtagatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatct |
356 |
Q |
| |
|
|||| |||| ||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36201056 |
tccacacttttaggtgtgagcaataccttgcaaccattatgatcttcaccaaaggggacaccaatct |
36201122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 219 - 372
Target Start/End: Original strand, 36198962 - 36199116
Alignment:
| Q |
219 |
ttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaacttgt------agatgtgagcaa |
312 |
Q |
| |
|
|||||||| ||||||||||||||| | ||||||||| ||||||||||||||||| | ||||||| |||||||||||| |||||||||||| |
|
|
| T |
36198962 |
ttggaagataatcatgtcatgtct-----agttgtatcaagttatgaaccttcatttgtttggataaaatctccaaacttgtagttgtagatgtgagcaa |
36199056 |
T |
|
| Q |
313 |
tatcttgcaaccattatgatcttcaccaaaggggataccaatcttactaaaatcaagtct |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36199057 |
tatcttgcaaccattatgatcttcaccaaaggggataccaatcttacttaaatcaagtct |
36199116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 36198878 - 36198958
Alignment:
| Q |
103 |
ttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggactt |
184 |
Q |
| |
|
|||||||||||||| |||||||||| ||| |||||||||||||||||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
36198878 |
ttcatctataccta-aaaagcacttaccaatctctaatctctccaacattgtgttttccaaaggatgtgcatgtttagactt |
36198958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 92 - 204
Target Start/End: Original strand, 36214722 - 36214833
Alignment:
| Q |
92 |
caaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattt |
191 |
Q |
| |
|
|||| ||||| || ||||||||| ||||| |||||| |||| |||||||||| ||||||| |||||||||||| | |||||||||||||||| |||| |
|
|
| T |
36214722 |
caaagtcttaattgatctataccaacaaa-gcacttgtcaatctctaatctccccaacattgtgttttccaaataaagtgcatgtttggacttcaaattt |
36214820 |
T |
|
| Q |
192 |
tcatcatctctgc |
204 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
36214821 |
tcaccatctctgc |
36214833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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