View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3107_high_28 (Length: 357)

Name: NF3107_high_28
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3107_high_28
NF3107_high_28
[»] chr4 (8 HSPs)
chr4 (164-305)||(30815995-30816136)
chr4 (164-305)||(36561224-36561362)
chr4 (164-275)||(420732-420843)
chr4 (230-272)||(30815954-30815996)
chr4 (230-272)||(36561361-36561403)
chr4 (10-55)||(36561074-36561119)
chr4 (301-342)||(36561430-36561471)
chr4 (22-55)||(30816241-30816274)
[»] chr1 (7 HSPs)
chr1 (164-305)||(17255875-17256016)
chr1 (164-305)||(46243759-46243900)
chr1 (164-298)||(45198325-45198456)
chr1 (230-272)||(17255834-17255876)
chr1 (230-272)||(45198277-45198319)
chr1 (230-272)||(46243899-46243941)
chr1 (305-342)||(45198212-45198249)
[»] chr5 (6 HSPs)
chr5 (164-305)||(10369102-10369243)
chr5 (164-305)||(38481098-38481239)
chr5 (230-272)||(10369242-10369284)
chr5 (12-55)||(10368954-10368997)
chr5 (12-55)||(38480950-38480993)
chr5 (230-272)||(38481238-38481280)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 164 - 305
Target Start/End: Complemental strand, 30816136 - 30815995
Alignment:
Q  164 ctcagataacccaattcagaaaacgcaacaaaatcacattacaatataatagagactcacaaaggcacagaagaatcgatttcagatttgaagaggaaga 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30816136 ctcagataacccaattcagaaaacgcaacaaaatcacattacaatataatagagactcacaaaggcatagaagaatcgatttcagatttgaagaggaaga 30816037  T
Q  264 atcgaatcgtcgtcggaatttgaatcaataggaagtatgaac 305  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  30816036 atcgaatcgtcgtcggaatttgaatcaataggaagtaggaac 30815995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 164 - 305
Target Start/End: Original strand, 36561224 - 36561362
Alignment:
Q  164 ctcagataacccaattcagaaaacgcaacaaaatcacattacaatataatagagactcacaaaggcacagaagaatcgatttcagatttgaagaggaaga 263  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36561224 ctcagataacccaattcataaaacgcaacaaaatcacattacaatataatagagactcacaaaggcacagaagaatcgatttcagatttgaagaggaaaa 36561323  T
Q  264 atcgaatcgtcgtcggaatttgaatcaataggaagtatgaac 305  Q
    || |||   |||||||||||||||||||||||||||| ||||    
T  36561324 attgaa---tcgtcggaatttgaatcaataggaagtaggaac 36561362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 164 - 275
Target Start/End: Original strand, 420732 - 420843
Alignment:
Q  164 ctcagataacccaattcagaaaacgcaacaaaatcacattacaatataatagagactcacaaaggcacagaagaatcgatttcagatttgaagaggaaga 263  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  420732 ctcagataacccaattcataaaacgcaacaaaatcacattacaatataatagagactcacaaaggcacagaagaatcgatttcagatttgaagaggaaga 420831  T
Q  264 atcgaatcgtcg 275  Q
    ||||||||||||    
T  420832 atcgaatcgtcg 420843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 272
Target Start/End: Complemental strand, 30815996 - 30815954
Alignment:
Q  230 acagaagaatcgatttcagatttgaagaggaagaatcgaatcg 272  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30815996 acagaagaatcgatttcagatttgaagaggaagaatcgaatcg 30815954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 36561361 - 36561403
Alignment:
Q  230 acagaagaatcgatttcagatttgaagaggaagaatcgaatcg 272  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  36561361 acagaagaatcgatttcagatttgaagaggaagaatcgaatcg 36561403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 36561074 - 36561119
Alignment:
Q  10 acatcatcagaaaatctaggacaaaaacgttgtcaacagaggttgt 55  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  36561074 acatcatcagaaaatctaggacaaaaacgttgtctacagaggttgt 36561119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 342
Target Start/End: Original strand, 36561430 - 36561471
Alignment:
Q  301 tgaacgaatttcagatctgaagggaaatttggggaagaaatt 342  Q
    |||||||||||||||| ||||| |||||||||||||||||||    
T  36561430 tgaacgaatttcagatttgaagagaaatttggggaagaaatt 36561471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 30816274 - 30816241
Alignment:
Q  22 aatctaggacaaaaacgttgtcaacagaggttgt 55  Q
    |||||||||||||||||||||| |||||||||||    
T  30816274 aatctaggacaaaaacgttgtctacagaggttgt 30816241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 164 - 305
Target Start/End: Complemental strand, 17256016 - 17255875
Alignment:
Q  164 ctcagataacccaattcagaaaacgcaacaaaatcacattacaatataatagagactcacaaaggcacagaagaatcgatttcagatttgaagaggaaga 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17256016 ctcagataacccaattcagaaaacgcaacaaaatcacattacaatataatagagactcacaaaggcatagaagaatcgatttcagatttgaagaggaaga 17255917  T
Q  264 atcgaatcgtcgtcggaatttgaatcaataggaagtatgaac 305  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  17255916 atcgaatcgtcgtcggaatttgaatcaataggaagtaagaac 17255875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 164 - 305
Target Start/End: Original strand, 46243759 - 46243900
Alignment:
Q  164 ctcagataacccaattcagaaaacgcaacaaaatcacattacaatataatagagactcacaaaggcacagaagaatcgatttcagatttgaagaggaaga 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  46243759 ctcagataacccaattcagaaaacgcaacaaaatcacattacaatataatagagactcacaaaggcatagaagaatcgatttcaaatttgaagaggaaga 46243858  T
Q  264 atcgaatcgtcgtcggaatttgaatcaataggaagtatgaac 305  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  46243859 atcgaatcgtcgtcggaatttgaatcaataggaagtaggaac 46243900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 164 - 298
Target Start/End: Complemental strand, 45198456 - 45198325
Alignment:
Q  164 ctcagataacccaattcagaaaacgcaacaaaatcacattacaatataatagagactcacaaaggcacagaagaatcgatttcagatttgaagaggaaga 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45198456 ctcagataacccaattcagaaaacgcaacaaaatcacattacaatataatagagactcacaaaggcacagaagaaacgatttcagatttgaagaggaaga 45198357  T
Q  264 atcgaatcgtcgtcggaatttgaatcaataggaag 298  Q
    ||||||||   ||||||||||||||||||| ||||    
T  45198356 atcgaatc---gtcggaatttgaatcaatatgaag 45198325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 272
Target Start/End: Complemental strand, 17255876 - 17255834
Alignment:
Q  230 acagaagaatcgatttcagatttgaagaggaagaatcgaatcg 272  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  17255876 acagaagaatcgatttcagatttgaagaggaagaatcgaatcg 17255834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 272
Target Start/End: Complemental strand, 45198319 - 45198277
Alignment:
Q  230 acagaagaatcgatttcagatttgaagaggaagaatcgaatcg 272  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  45198319 acagaagaatcgatttcagatttgaagaggaagaatcgaatcg 45198277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 46243899 - 46243941
Alignment:
Q  230 acagaagaatcgatttcagatttgaagaggaagaatcgaatcg 272  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  46243899 acagaagaatcgatttcagatttgaagaggaagaatcgaatcg 46243941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 342
Target Start/End: Complemental strand, 45198249 - 45198212
Alignment:
Q  305 cgaatttcagatctgaagggaaatttggggaagaaatt 342  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  45198249 cgaatttcagatttgaagagaaatttggggaagaaatt 45198212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 164 - 305
Target Start/End: Original strand, 10369102 - 10369243
Alignment:
Q  164 ctcagataacccaattcagaaaacgcaacaaaatcacattacaatataatagagactcacaaaggcacagaagaatcgatttcagatttgaagaggaaga 263  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10369102 ctcagataacctaattcagaaaacgcaacaaaatcacattacaatataatagagactcacaaaggcatagaagaatcgatttcagatttgaagaggaaga 10369201  T
Q  264 atcgaatcgtcgtcggaatttgaatcaataggaagtatgaac 305  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  10369202 atcgaatcgtcgtcggaatttgaatcaataggaagtaggaac 10369243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 164 - 305
Target Start/End: Original strand, 38481098 - 38481239
Alignment:
Q  164 ctcagataacccaattcagaaaacgcaacaaaatcacattacaatataatagagactcacaaaggcacagaagaatcgatttcagatttgaagaggaaga 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38481098 ctcagataacccaattcagaaaacgcaacaaaatcacattacaatataatagagactcacaaaggcatagaagaatcgatttcagatttgaagaggaaga 38481197  T
Q  264 atcgaatcgtcgtcggaatttgaatcaataggaagtatgaac 305  Q
    |||||||||||||| |||||||||||||||||||||| ||||    
T  38481198 atcgaatcgtcgtcagaatttgaatcaataggaagtaggaac 38481239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 10369242 - 10369284
Alignment:
Q  230 acagaagaatcgatttcagatttgaagaggaagaatcgaatcg 272  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10369242 acagaagaatcgatttcagatttgaagaggaagaatcgaatcg 10369284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 10368954 - 10368997
Alignment:
Q  12 atcatcagaaaatctaggacaaaaacgttgtcaacagaggttgt 55  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  10368954 atcatcagaaaatctaggacaaaaacgttgtctacagaggttgt 10368997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 38480950 - 38480993
Alignment:
Q  12 atcatcagaaaatctaggacaaaaacgttgtcaacagaggttgt 55  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  38480950 atcatcagaaaatctaggacaaaaacgttgtctacagaggttgt 38480993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 38481238 - 38481280
Alignment:
Q  230 acagaagaatcgatttcagatttgaagaggaagaatcgaatcg 272  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  38481238 acagaataatcgatttcagatttgaagaggaagaatcgaatcg 38481280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University