View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3107_high_3 (Length: 797)

Name: NF3107_high_3
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3107_high_3
NF3107_high_3
[»] chr3 (2 HSPs)
chr3 (163-786)||(35990654-35991277)
chr3 (20-136)||(35990512-35990628)
[»] chr6 (5 HSPs)
chr6 (320-413)||(9989709-9989802)
chr6 (320-406)||(9996109-9996195)
chr6 (320-406)||(10002034-10002120)
chr6 (320-413)||(10011588-10011681)
chr6 (640-689)||(9990262-9990311)
[»] chr2 (1 HSPs)
chr2 (326-427)||(11247093-11247194)
[»] chr7 (2 HSPs)
chr7 (320-428)||(33356828-33356936)
chr7 (33-91)||(46179910-46179968)
[»] chr5 (1 HSPs)
chr5 (33-93)||(31614135-31614195)
[»] scaffold0205 (1 HSPs)
scaffold0205 (35-77)||(21431-21473)
[»] chr8 (1 HSPs)
chr8 (55-97)||(2512757-2512799)
[»] chr1 (1 HSPs)
chr1 (33-91)||(43328468-43328526)


Alignment Details
Target: chr3 (Bit Score: 604; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 163 - 786
Target Start/End: Original strand, 35990654 - 35991277
Alignment:
Q  163 gtttgctgtaatgagttgattttatggatgtgtaacttatcattgatgagcagggagtgtgctaagtgggggagggagtgttccagctgagaaggcatct 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35990654 gtttgctgtaatgagttgattttatggatgtgtaacttatcattgatgagcagggagtgtgctaagtgggggagggagtgttccagctgagaaggcatct 35990753  T
Q  263 gctgcgacttgggtgaaaatggtgaatcagatccaaaatgcagctttatctactcctcttgggattccaatgatttatgggatagatgctgttcatggtc 362  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35990754 gctgagacttgggtgaaaatggtgaatcagatccaaaatgcagctttatctactcctcttgggattccaatgatttatgggatagatgctgttcatggtc 35990853  T
Q  363 acaataatgtctacaacgctactatttttcctcacaatgttggtcttggagttaccaggcaagtttatgtatatgcaggaattttaatagccatgaaatg 462  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35990854 acaataatgtctacaatgctactatttttcctcacaatgttggtcttggagttaccaggcaagtttatgtatatgcaggaattttaatagccatgaaatg 35990953  T
Q  463 attgaaaagaagaaagaattagtagtgacattaaattcatatttgataatttgtaactggaagctatacttgaagaagtgaacctttgcgataaaaacaa 562  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35990954 attgaaaagaagaaagaattagcagtgacattaaattcatatttgataatttgtaactggaagctatacttgaagaagtgaacctttgcgataaaaacaa 35991053  T
Q  563 accttgcaatttagtgcattttcttgcttttattgtaatggaatctactgtttattagggatccagtgctaataaaaaagattggagaagcaactgccct 662  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35991054 accttgcaatttagtgcattttcttgcttttattgtaatggaatctactgtttattagggatccagtgctaataaaaaagattggagaagcaactgccct 35991153  T
Q  663 tgaagttagagctactggaattccatacgtgtttgctccatgtatcgcggtaaagaaacagtgtttcaatattctgttatttaaatcatatgtaacattg 762  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35991154 tgaagttagagctactggaattccatatgtgtttgctccatgtatcgcggtaaagaaacagtgtttcaatattctgttatttaaatcatatgtaacattg 35991253  T
Q  763 atcaagtttgctgatatgatgatg 786  Q
    |||||||||||||||||| |||||    
T  35991254 atcaagtttgctgatatgttgatg 35991277  T

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Target: chr3; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 35990512 - 35990628
Alignment:
Q  20 tccaacacttactcgacactgacacatgtggtgacattcagttattttattttctcaagttattatcagtgttgacggggtagtgtggtgtctggtgtca 119  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |    
T  35990512 tccaacacttactcgacactgacacatgtggttacattcagttattttattttctcaaattattatcagtgtcgacggggtagtgtggtgtctggtgtta 35990611  T
Q  120 gtgtttcgtagaaatgg 136  Q
    |||||||||||||||||    
T  35990612 gtgtttcgtagaaatgg 35990628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 320 - 413
Target Start/End: Original strand, 9989709 - 9989802
Alignment:
Q  320 cttgggattccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaacgctactatttttcctcacaatgttggtcttggag 413  Q
    ||||| ||||||||||||||||| || ||||||||||||||  | |||||||| || || ||||||||||||||||||||||||||||| ||||    
T  9989709 cttggaattccaatgatttatggaattgatgctgttcatggaaataataatgtatataaagctactatttttcctcacaatgttggtctaggag 9989802  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 320 - 406
Target Start/End: Original strand, 9996109 - 9996195
Alignment:
Q  320 cttgggattccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaacgctactatttttcctcacaatgttggt 406  Q
    ||||| ||||||||||| ||||| || ||||||||||||||  | ||||||||||| ||||| ||||||||||||||||||||||||    
T  9996109 cttggaattccaatgatatatggaattgatgctgttcatggaaataataatgtctataacgcaactatttttcctcacaatgttggt 9996195  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 320 - 406
Target Start/End: Original strand, 10002034 - 10002120
Alignment:
Q  320 cttgggattccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaacgctactatttttcctcacaatgttggt 406  Q
    ||||| ||||||||||| ||||| || ||||||||||||||  | ||||||||||| ||||| ||||||||||||||||||||||||    
T  10002034 cttggaattccaatgatatatggaattgatgctgttcatggaaataataatgtctataacgcaactatttttcctcacaatgttggt 10002120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 320 - 413
Target Start/End: Original strand, 10011588 - 10011681
Alignment:
Q  320 cttgggattccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaacgctactatttttcctcacaatgttggtcttggag 413  Q
    ||||| ||||||||||||||||| || |||||||||||||| || || ||||| || || ||||||||||| ||||||||||||||||| ||||    
T  10011588 cttggaattccaatgatttatggaattgatgctgttcatggacataacaatgtttataaagctactattttccctcacaatgttggtctaggag 10011681  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 640 - 689
Target Start/End: Original strand, 9990262 - 9990311
Alignment:
Q  640 aagattggagaagcaactgcccttgaagttagagctactggaattccata 689  Q
    |||||||| || |||||||| ||||||| |||||| ||||||||||||||    
T  9990262 aagattggtgatgcaactgctcttgaagctagagcaactggaattccata 9990311  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 326 - 427
Target Start/End: Complemental strand, 11247194 - 11247093
Alignment:
Q  326 attccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaacgctactatttttcctcacaatgttggtcttggagttaccaggcaag 425  Q
    ||||| ||||| ||||| || ||||| |||||||| |||||||||||||| || ||||| || ||||| || |||||||| ||||||  |||||||||||    
T  11247194 attcccatgatgtatggtattgatgccgttcatggacacaataatgtctataatgctaccatatttccccataatgttgggcttggatgtaccaggcaag 11247095  T
Q  426 tt 427  Q
    ||    
T  11247094 tt 11247093  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 320 - 428
Target Start/End: Complemental strand, 33356936 - 33356828
Alignment:
Q  320 cttgggattccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaacgctactatttttcctcacaatgttggtcttggagttacca 419  Q
    ||||| ||||||||  |||||||||| ||||||||||||||  |||    ||| ||||| || |||||||||||||||||| |||| || |||| |||||    
T  33356936 cttggaattccaattttttatgggattgatgctgttcatggcaacagccctgtttacaaagcaactatttttcctcacaatattgggctgggagctacca 33356837  T
Q  420 ggcaagttt 428  Q
    || ||||||    
T  33356836 ggtaagttt 33356828  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 46179910 - 46179968
Alignment:
Q  33 cgacactgacacatgtggtgacattcagttattttattttctcaagttattatcagtgt 91  Q
    |||||| |||||||||| | | ||||| ||| ||||||||||||| |||||||||||||    
T  46179910 cgacaccgacacatgtgattatattcaattaatttattttctcaacttattatcagtgt 46179968  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 31614195 - 31614135
Alignment:
Q  33 cgacactgacacatgtggtgacattcagttattttattttctcaagttattatcagtgttg 93  Q
    |||||||||||||| |||| ||| | |||||||| ||||||||||  ||||||||||||||    
T  31614195 cgacactgacacatatggttacaattagttatttcattttctcaaactattatcagtgttg 31614135  T

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Target: scaffold0205 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 21473 - 21431
Alignment:
Q  35 acactgacacatgtggtgacattcagttattttattttctcaa 77  Q
    ||||||| ||||||||| ||||||| |||||||||||||||||    
T  21473 acactgatacatgtggttacattcaattattttattttctcaa 21431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 2512799 - 2512757
Alignment:
Q  55 attcagttattttattttctcaagttattatcagtgttgacgg 97  Q
    ||||| ||||||||||||||||| |||||| ||||||||||||    
T  2512799 attcaattattttattttctcaaattattaccagtgttgacgg 2512757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 43328526 - 43328468
Alignment:
Q  33 cgacactgacacatgtggtgacattcagttattttattttctcaagttattatcagtgt 91  Q
    ||||| ||||||||||||| ||||| | |||||| |||||||||| ||||||| |||||    
T  43328526 cgacaatgacacatgtggttacattaaattatttcattttctcaaattattataagtgt 43328468  T

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