View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_high_30 (Length: 350)
Name: NF3107_high_30
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 48544908 - 48545076
Alignment:
| Q |
17 |
atattggacatttatttaattaaaaatttataactctaattctctgacattttaaaataaattgggtggataaatatatggaaccaaccatttgttnnnn |
116 |
Q |
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| T |
48544908 |
atattggacatttatttaattaaaaatt-ataactctaattctctgacattttaaaataaattgggtggataaatatatggaaccaaccatttgtt--aa |
48545004 |
T |
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| Q |
117 |
nnnnnncatatatgaaatgaaccagtcgattccttcttgcaattctttttgtactgctgagcattttctaca |
188 |
Q |
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| T |
48545005 |
aaaaaacatatatgaaatcaaccaatcgattccttcttgaaattctttttgtactactgagcattttttaca |
48545076 |
T |
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