View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3107_high_39 (Length: 318)

Name: NF3107_high_39
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3107_high_39
NF3107_high_39
[»] chr1 (1 HSPs)
chr1 (19-308)||(51689341-51689641)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 51689641 - 51689341
Alignment:
Q  19 tcctctgtaccgttgcatattttccgatcacctcactccggttcttgcttatcggtgtttggttaaagaagatgaaagagatgctcctagctttctcttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51689641 tcctctgtaccgttgcatattttccgatcacctcactccggttcttgcttatcggtgtttggttaaagaagatgaaagagatgctcctagctttctcttt 51689542  T
Q  119 gaatctgctgaacccggtcttcacatttctagcaccgtaagttacttcaattctatgaagcacaaacaccaga-----------cacattgacaccggac 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||    
T  51689541 gaatctgctgaacccggtcttcacatttctagcaccgtaagttacttcaattctatgaagcacaaacaccagacacaatactgacacattgacaccggac 51689442  T
Q  208 atgaaataattgaatgtaatcacgtgtgttcgttcgtatggacacgcgtgagaagcttcaatcgtaagtgtcggtgctaacgtcattgtttatcctctct 307  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  51689441 atgaaataattgaatgtaatcacgtgtgttccttcgtatggacacgcgtgagaagcttcaatcataagtgtcggtgctaacgtcattgtttatcctctct 51689342  T
Q  308 g 308  Q
    |    
T  51689341 g 51689341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University