View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_high_4 (Length: 667)
Name: NF3107_high_4
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 623; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 18 - 656
Target Start/End: Complemental strand, 31960240 - 31959602
Alignment:
| Q |
18 |
aaaacaatatcacaaggtaagaaaagttaccgatacgacatcacccaatgtagttttctgcagatcaggcagagtacgagtatttctggtagctgctgac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31960240 |
aaaacaatatcacaaggtaagaaaagttaccgatacgacatcacccaatgtagttttctgcagatcaggcatagtacgagtatttctggtagctgctgac |
31960141 |
T |
|
| Q |
118 |
tgagctatggcacccaacccaccgggctcagtatgattctttccggtagctctcatttccgcggcctgtatagcagcagcatcactctgatccaatggct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31960140 |
tgagctatggcacccaacccaccgggctcagtatgattctttccggtagctctcatttccgcggcctgtatagcagcagcatcactctgatccaacggct |
31960041 |
T |
|
| Q |
218 |
tatcaccggcttgactcaaagcagaagcttccagtgcctctccaatggttatagcattcttgtccaaaaccaaaccaggatcattcataggcacatcagg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31960040 |
tatcaccggcttgactcaaagcagaagcttccagtgcctctccaatggttatagcattcttgtccaaaaccaaaccaggatcattcataggcacatcagg |
31959941 |
T |
|
| Q |
318 |
ttcaacaaactgtccaacaacttgtgatccaacagattctgtgatcacacggtttgcacccactttggttttggagacactcatgccttggttttttgct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31959940 |
ttcaacaaactgtccaacaacttgtgatccaacagattctgtgatcacacggtttgcacccactttggttttggagacactcatgccttggttttttgct |
31959841 |
T |
|
| Q |
418 |
atgtctgagatgtcttcgtggcttacgaggccggcagcggtgtttactgcagctgctgattgcatcacggaggctggactgcccttttgggtttgtccta |
517 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31959840 |
atgtctgagatgtctccgtggcttacgaggccggcagcggtgtttactgcagctgctgattgcatcacggaggctggactgcccttttgggtttgtccta |
31959741 |
T |
|
| Q |
518 |
gggcttgattctctgtggcttgcatgagagctgcgtctcttggtttgattggttgtgaggctaattcaccagagacgttgaaaacgtcaccatatttgat |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31959740 |
gggcttgattctctgtggcttgcatgagagctgcgtctcttggtttgattggttgtgaggctaattcaccagagacgttgaaaacgtcaccatatttgat |
31959641 |
T |
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| Q |
618 |
gggttcttgctcggagaattgttctgcttgtggtctctg |
656 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |
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| T |
31959640 |
gggttcttgctcggagaattgctctgcttgtggtctctg |
31959602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 577 - 626
Target Start/End: Original strand, 11248026 - 11248075
Alignment:
| Q |
577 |
gctaattcaccagagacgttgaaaacgtcaccatatttgatgggttcttg |
626 |
Q |
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||||| ||||| ||||| |||||||| ||||| ||||||||||||||||| |
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| T |
11248026 |
gctaagtcaccggagacattgaaaacttcaccgtatttgatgggttcttg |
11248075 |
T |
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