View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_high_40 (Length: 315)
Name: NF3107_high_40
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_high_40 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 7278908 - 7278610
Alignment:
| Q |
1 |
gaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaattgaag |
100 |
Q |
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| T |
7278908 |
gaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaattgaag |
7278809 |
T |
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| Q |
101 |
ctttggtgaatgaggatggcgaggtgaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaa |
200 |
Q |
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| T |
7278808 |
ctttggtgaatgaggatggtgaggtgaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaa |
7278709 |
T |
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| Q |
201 |
tgaggatggtagcgagggtaaatgtgtgaa---agaatataattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaagcttt |
296 |
Q |
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| T |
7278708 |
tgaggatggtagcgagggtaaatgtgtgaaagaagaagatcattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaagcttt |
7278610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 7374931 - 7375229
Alignment:
| Q |
1 |
gaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaattgaag |
100 |
Q |
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| T |
7374931 |
gaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaattgaag |
7375030 |
T |
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| Q |
101 |
ctttggtgaatgaggatggcgaggtgaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaa |
200 |
Q |
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| T |
7375031 |
ctttggtgaatgaggatggcgaggtgaattgtatggagaaagaagagagggggtatgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaa |
7375130 |
T |
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| Q |
201 |
tgaggatggtagcgagggtaaatgtgtga---aagaatataattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaagcttt |
296 |
Q |
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| T |
7375131 |
tgaggatggtagcgagggtaaatgtgtgaaagaagaagatcattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaagcttt |
7375229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 7278593 - 7278543
Alignment:
| Q |
133 |
atggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaa |
183 |
Q |
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| T |
7278593 |
atggaggaagaagatagggggtgtaaggaggagaatgagggaggtgaaaaa |
7278543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 7375246 - 7375296
Alignment:
| Q |
133 |
atggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaa |
183 |
Q |
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|||||| ||||||| ||||||||| | ||| |||||||||||||||||||| |
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| T |
7375246 |
atggaggaagaagatagggggtgtaaggaggagaatgagggaggtgaaaaa |
7375296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 7278576 - 7278520
Alignment:
| Q |
60 |
ggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgagga |
116 |
Q |
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||||||| | |||||||||||||| ||| | ||| |||||||||||| ||||||||| |
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| T |
7278576 |
ggggtgtaaggaggagaatgagggaggtgaaaaatttgaagctttggggaatgagga |
7278520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 7375263 - 7375319
Alignment:
| Q |
60 |
ggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgagga |
116 |
Q |
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| T |
7375263 |
ggggtgtaaggaggagaatgagggaggtgaaaaatttgaagctttggggaatgagga |
7375319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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