View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3107_high_42 (Length: 305)

Name: NF3107_high_42
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3107_high_42
NF3107_high_42
[»] chr1 (18 HSPs)
chr1 (12-287)||(43090010-43090290)
chr1 (134-204)||(40160347-40160417)
chr1 (148-225)||(47982684-47982761)
chr1 (135-287)||(15257824-15257981)
chr1 (177-287)||(24575352-24575462)
chr1 (171-287)||(29678082-29678198)
chr1 (157-226)||(44595856-44595925)
chr1 (170-287)||(37441791-37441908)
chr1 (141-216)||(3576954-3577029)
chr1 (148-226)||(5205149-5205232)
chr1 (134-216)||(31868893-31868980)
chr1 (148-287)||(7955667-7955811)
chr1 (176-226)||(7994797-7994847)
chr1 (170-216)||(36418565-36418611)
chr1 (170-215)||(13645766-13645811)
chr1 (171-216)||(28005781-28005826)
chr1 (139-207)||(27077585-27077653)
chr1 (134-226)||(42936353-42936440)
[»] chr7 (26 HSPs)
chr7 (138-287)||(45054801-45054955)
chr7 (138-226)||(36471817-36471905)
chr7 (134-287)||(33899583-33899741)
chr7 (148-216)||(22074584-22074652)
chr7 (148-224)||(17026039-17026120)
chr7 (135-287)||(11596410-11596570)
chr7 (135-226)||(18250685-18250781)
chr7 (134-181)||(8110763-8110810)
chr7 (148-216)||(7539700-7539773)
chr7 (165-262)||(23236785-23236882)
chr7 (135-225)||(36926409-36926509)
chr7 (141-225)||(3931389-3931483)
chr7 (134-287)||(42071519-42071682)
chr7 (134-287)||(8390116-8390274)
chr7 (240-287)||(15433732-15433779)
chr7 (240-287)||(18740837-18740884)
chr7 (170-225)||(26215762-26215817)
chr7 (240-287)||(46574234-46574281)
chr7 (237-287)||(10618133-10618183)
chr7 (237-287)||(35544147-35544197)
chr7 (138-207)||(35544226-35544300)
chr7 (170-216)||(37333742-37333788)
chr7 (176-225)||(39429505-39429554)
chr7 (135-180)||(48633254-48633299)
chr7 (157-216)||(666265-666329)
chr7 (148-200)||(26719177-26719229)
[»] chr8 (8 HSPs)
chr8 (135-287)||(43966887-43967044)
chr8 (135-225)||(39477423-39477518)
chr8 (141-216)||(25731903-25731983)
chr8 (148-215)||(13784228-13784295)
chr8 (135-225)||(22563263-22563358)
chr8 (157-216)||(22930898-22930957)
chr8 (134-226)||(9413303-9413405)
chr8 (176-216)||(17865723-17865763)
[»] chr5 (22 HSPs)
chr5 (135-287)||(4983943-4984100)
chr5 (148-287)||(41782717-41782856)
chr5 (148-287)||(26217441-26217585)
chr5 (148-287)||(11136641-11136785)
chr5 (134-226)||(19715777-19715874)
chr5 (135-226)||(10493379-10493475)
chr5 (135-226)||(27195428-27195524)
chr5 (171-285)||(1840958-1841071)
chr5 (134-225)||(3805413-3805514)
chr5 (135-287)||(32157363-32157525)
chr5 (153-286)||(14501333-14501463)
chr5 (134-225)||(39408723-39408819)
chr5 (148-216)||(26299464-26299537)
chr5 (148-216)||(43385816-43385889)
chr5 (176-285)||(26297956-26298065)
chr5 (135-225)||(27905480-27905580)
chr5 (156-226)||(28430580-28430650)
chr5 (135-226)||(19283623-19283724)
chr5 (176-225)||(27451030-27451079)
chr5 (176-225)||(34720103-34720152)
chr5 (176-225)||(34856997-34857046)
chr5 (176-216)||(39407032-39407072)
[»] scaffold0444 (1 HSPs)
scaffold0444 (135-287)||(1391-1543)
[»] chr6 (11 HSPs)
chr6 (148-287)||(33109850-33109994)
chr6 (135-287)||(7957054-7957216)
chr6 (158-225)||(12428076-12428143)
chr6 (141-287)||(13311359-13311510)
chr6 (183-287)||(22295414-22295518)
chr6 (177-287)||(10346264-10346374)
chr6 (135-215)||(26643898-26643978)
chr6 (135-215)||(26749864-26749944)
chr6 (137-180)||(11460850-11460893)
chr6 (170-216)||(18961890-18961936)
chr6 (157-216)||(6998603-6998667)
[»] chr4 (17 HSPs)
chr4 (135-287)||(44377615-44377767)
chr4 (148-287)||(52705611-52705755)
chr4 (135-215)||(16743169-16743249)
chr4 (134-262)||(50711444-50711572)
chr4 (135-226)||(24009469-24009565)
chr4 (148-214)||(7505442-7505513)
chr4 (134-225)||(9469427-9469527)
chr4 (141-215)||(46945225-46945304)
chr4 (135-225)||(51409154-51409249)
chr4 (135-181)||(32398467-32398513)
chr4 (170-287)||(49820423-49820540)
chr4 (157-287)||(50605482-50605617)
chr4 (158-225)||(28266784-28266851)
chr4 (240-287)||(45674407-45674454)
chr4 (176-287)||(53369113-53369224)
chr4 (177-287)||(48977056-48977166)
chr4 (135-225)||(43386534-43386634)
[»] chr2 (10 HSPs)
chr2 (148-287)||(2647578-2647722)
chr2 (138-226)||(40675178-40675266)
chr2 (135-287)||(36538077-36538239)
chr2 (135-287)||(27633142-27633304)
chr2 (135-179)||(9963171-9963215)
chr2 (135-225)||(44741336-44741436)
chr2 (240-287)||(33830993-33831040)
chr2 (237-287)||(1093994-1094044)
chr2 (133-225)||(20986062-20986164)
chr2 (176-225)||(12139417-12139466)
[»] chr3 (16 HSPs)
chr3 (148-287)||(5418061-5418205)
chr3 (137-226)||(40942902-40942996)
chr3 (157-224)||(7521781-7521848)
chr3 (171-225)||(25252920-25252974)
chr3 (135-225)||(39471119-39471219)
chr3 (240-287)||(12710175-12710222)
chr3 (170-225)||(20407790-20407845)
chr3 (240-287)||(20661790-20661837)
chr3 (169-216)||(39133822-39133869)
chr3 (148-226)||(7834080-7834158)
chr3 (240-286)||(26050111-26050157)
chr3 (148-217)||(27040592-27040666)
chr3 (148-213)||(46294289-46294359)
chr3 (157-225)||(38644264-38644337)
chr3 (156-216)||(15823229-15823289)
chr3 (135-226)||(52934231-52934327)
[»] scaffold0746 (1 HSPs)
scaffold0746 (163-218)||(5333-5388)
[»] scaffold0106 (1 HSPs)
scaffold0106 (171-225)||(26539-26593)


Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 287
Target Start/End: Complemental strand, 43090290 - 43090010
Alignment:
Q  12 atgaaattaacaaaaccgattatacagcacagctaatttacctcattcttcgttgtnnnnnnnntgtcatgctagttaacttgtgttctaagtaaaagta 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  43090290 atgaaattaacaaaaccgattatacagcacagctaatttacctcattcttcgttgtaaaaaaaatgtcatgctagttaacttgtgttctaagtaaaagta 43090191  T
Q  112 atttaattagtataaactgtccgtagggctggaaat-----gagttgagtcgaacttgtctgagctcggctcgacaagaattggttcgactcgaaactcg 206  Q
    |||||||||||||| |||||||||||||||||||||     |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  43090190 atttaattagtatacactgtccgtagggctggaaatgagtcgagtcgagtcgaacttgtctgagctcggctcgacaagaattggttcggctcgaaactcg 43090091  T
Q  207 actcgagttcaaaacgaaccnnnnnnngggcttgagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
    |||||||||||||||||||        ||||| ||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  43090090 actcgagttcaaaacgaacatttttttgggctcgagttcggctcgtttaaagttcacgagcaactcggttcggctcgttag 43090010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 40160417 - 40160347
Alignment:
Q  134 gtagggctggaaatgagttgagtcgaacttgtctgagctcggctcgacaagaattggttcgactcgaaact 204  Q
    ||||||||| |||||||| |||||||| ||||||||||||| ||||| |||||||||||||||||||||||    
T  40160417 gtagggctgaaaatgagtcgagtcgaatttgtctgagctcgactcgataagaattggttcgactcgaaact 40160347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 47982684 - 47982761
Alignment:
Q  148 gagttgagtcgaacttgtctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaac 225  Q
    |||| ||||||||| ||||| |||||| ||| |||||||| ||||||  |||||||||||||||||||||||||||||    
T  47982684 gagtcgagtcgaacctgtctaagctcgactcaacaagaatcggttcggttcgaaactcgactcgagttcaaaacgaac 47982761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 287
Target Start/End: Complemental strand, 15257981 - 15257824
Alignment:
Q  135 tagggctggaaatgagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnn 229  Q
    |||||||| |||||||| ||||||||  |||||||||||  ||||||     ||||||||||||| |||||||||||  |||||||| |||||||||       
T  15257981 tagggctgaaaatgagtcgagtcgaatctgtctgagctcaactcgactcgataagaattggttcggctcgaaactcggttcgagttcgaaacgaaccatt 15257882  T
Q  230 nnnngggcttgagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
          ||| ||||||||||||||||||||||| ||   |||||||||| ||||||||    
T  15257881 tttctagctcgagttcggctcgtttaaagttcacgaaccactcggttcgactcgttag 15257824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 24575352 - 24575462
Alignment:
Q  177 tcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnnngggcttgagttcggctcgtttaaagttcatgattaactcggtt 276  Q
    |||| ||||||||||||| ||||||||||||||||||||  ||||||||           || ||||||||||||||||||||||| ||  |||||||||    
T  24575352 tcgataagaattggttcggctcgaaactcgactcgagtttgaaacgaactttttttttaactcgagttcggctcgtttaaagttcacgaacaactcggtt 24575451  T
Q  277 cggctcgttag 287  Q
    |||||||||||    
T  24575452 cggctcgttag 24575462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 287
Target Start/End: Complemental strand, 29678198 - 29678082
Alignment:
Q  171 ctcggctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnnngggcttgagttcggctcgtttaaagttcatgattaac 270  Q
    |||| ||||| ||||| ||||||| ||||||||||||||| ||||| |||||||||          || ||||||||||||||||||||||| ||  |||    
T  29678198 ctcgactcgataagaaatggttcggctcgaaactcgactcaagttcgaaacgaacctttttttcatctcgagttcggctcgtttaaagttcacgagcaac 29678099  T
Q  271 tcggttcggctcgttag 287  Q
    || ||||||||||||||    
T  29678098 tctgttcggctcgttag 29678082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 44595856 - 44595925
Alignment:
Q  157 cgaacttgtctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaacc 226  Q
    ||||| |||||||||||| ||||| |||||||||||||  ||||||||||||| |||||| | |||||||    
T  44595856 cgaacctgtctgagctcgactcgataagaattggttcggttcgaaactcgacttgagttcgatacgaacc 44595925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 287
Target Start/End: Complemental strand, 37441908 - 37441791
Alignment:
Q  170 gctcggctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnnngggcttgagttcggctcgtttaaagttcatgattaa 269  Q
    ||||| ||||| ||||||||||||| ||||||||||| ||||||||| | ||||||          ||| ||||||||||||||||||||||| ||  |     
T  37441908 gctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaagttcacgaacag 37441809  T
Q  270 ctcggttcggctcgttag 287  Q
     |||||||||||||||||    
T  37441808 ttcggttcggctcgttag 37441791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 3576954 - 3577029
Alignment:
Q  141 tggaaatgagttgagtcgaacttgtctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagttc 216  Q
    ||||||||||| ||||||||||||||| | |||| || || ||||||||||||  |||||||||||| | ||||||    
T  3576954 tggaaatgagtcgagtcgaacttgtctaatctcgacttgataagaattggttcagctcgaaactcgatttgagttc 3577029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 5205232 - 5205149
Alignment:
Q  148 gagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaacc 226  Q
    |||| ||||||||| ||||||||||||  |||||     ||||||||||||| ||||||||||||||||||||  |||||||||    
T  5205232 gagtcgagtcgaacctgtctgagctcgattcgactccataagaattggttcggctcgaaactcgactcgagtttgaaacgaacc 5205149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 216
Target Start/End: Original strand, 31868893 - 31868980
Alignment:
Q  134 gtagggctggaaatgagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttc 216  Q
    |||||| || |||||||| ||||| |||| ||||||||||||||||||     ||||||||  ||| |||||||||||||||||||||    
T  31868893 gtagggttgaaaatgagtcgagtcaaactcgtctgagctcggctcgactcaataagaattgactcggctcgaaactcgactcgagttc 31868980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 287
Target Start/End: Original strand, 7955667 - 7955811
Alignment:
Q  148 gagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnnngggcttgag 242  Q
    |||| ||||||||  |||||||||||| ||||||     ||||||||||||| |||||||||||  |||||||| ||||||| |         ||| |||    
T  7955667 gagtcgagtcgaatctgtctgagctcgactcgactcaataagaattggttcggctcgaaactcggttcgagttcgaaacgaatcttttttctagctcgag 7955766  T
Q  243 ttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
    |||||||||||||||||||| ||   ||| |||||| ||||||||    
T  7955767 ttcggctcgtttaaagttcacgaaccacttggttcgactcgttag 7955811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 7994797 - 7994847
Alignment:
Q  176 ctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaacc 226  Q
    ||||| |||||||| |||  ||||||||||||||||||||| |||||||||    
T  7994797 ctcgataagaattgattcagctcgaaactcgactcgagttcgaaacgaacc 7994847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 36418565 - 36418611
Alignment:
Q  170 gctcggctcgacaagaattggttcgactcgaaactcgactcgagttc 216  Q
    ||||| ||||| ||||||||||||| ||||||||||| |||||||||    
T  36418565 gctcgactcgataagaattggttcggctcgaaactcggctcgagttc 36418611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 13645811 - 13645766
Alignment:
Q  170 gctcggctcgacaagaattggttcgactcgaaactcgactcgagtt 215  Q
    ||||| |||||  |||||||||||| ||||||||||||||||||||    
T  13645811 gctcgactcgattagaattggttcggctcgaaactcgactcgagtt 13645766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 28005781 - 28005826
Alignment:
Q  171 ctcggctcgacaagaattggttcgactcgaaactcgactcgagttc 216  Q
    |||| ||||| ||||||||||||| ||||||||||||||| |||||    
T  28005781 ctcgactcgataagaattggttcggctcgaaactcgactcaagttc 28005826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 27077653 - 27077585
Alignment:
Q  139 gctggaaatgagttgagtcgaacttgtctgagctcggctcgacaagaattggttcgactcgaaactcga 207  Q
    ||||||||||||| || ||||||| ||||||||||| || |  |||||||| |||  ||||||||||||    
T  27077653 gctggaaatgagtcgaatcgaactcgtctgagctcgactagttaagaattgattcagctcgaaactcga 27077585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 226
Target Start/End: Complemental strand, 42936440 - 42936353
Alignment:
Q  134 gtagggctggaaatgagttgagtcgaacttgtctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaacc 226  Q
    |||||| ||||||||||| |||||     |||||||||||| ||||| || |||||||||  |||||||||  ||| | ||||||||||||||    
T  42936440 gtagggttggaaatgagtcgagtc-----tgtctgagctcgactcgataaaaattggttcagctcgaaacttaacttgtgttcaaaacgaacc 42936353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 138 - 287
Target Start/End: Original strand, 45054801 - 45054955
Alignment:
Q  138 ggctggaaatgagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnn 232  Q
    |||||||||||||| |||||||||||||||||||| ||||||||     ||||||||||||| || ||||||||||||||||||||||||||||          
T  45054801 ggctggaaatgagtcgagtcgaacttgtctgagcttggctcgactcgataagaattggttcggcttgaaactcgactcgagttcaaaacgaacctttttt 45054900  T
Q  233 ngggcttgagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
     ||||| ||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  45054901 tgggctcgagttcggctcgtttaaagttcacgagcaactcggttcggctcgttag 45054955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 36471817 - 36471905
Alignment:
Q  138 ggctggaaatgagttgagtcgaacttgtctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaacc 226  Q
    |||||||||||||| ||||||||| |||||||||||| ||||| |||||||| |||| ||| ||||||||||| ||||| |||| ||||    
T  36471817 ggctggaaatgagtcgagtcgaacctgtctgagctcgactcgataagaattgattcggctcaaaactcgactcaagttcgaaacaaacc 36471905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 287
Target Start/End: Complemental strand, 33899741 - 33899583
Alignment:
Q  134 gtagggctggaaatgagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnn 228  Q
    |||||||||||||||||| ||||||||  ||||| |||||| ||||||     |||||||| |||| |||||||||||  ||| ||||||||||||||      
T  33899741 gtagggctggaaatgagtcgagtcgaatctgtctcagctcgactcgactcgataagaattgattcggctcgaaactcggttcgggttcaaaacgaacctt 33899642  T
Q  229 nnnnngggcttgagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
           ||| ||||||||||||||||||||||| ||   |||||||||| ||||||||    
T  33899641 ttttctagctcgagttcggctcgtttaaagttcacgaaccactcggttcgactcgttag 33899583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 22074584 - 22074652
Alignment:
Q  148 gagttgagtcgaacttgtctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagttc 216  Q
    |||||||||||||| | |||||||| | ||||| ||||||||||||| |||||||||||||||||||||    
T  22074584 gagttgagtcgaacctatctgagctagactcgataagaattggttcggctcgaaactcgactcgagttc 22074652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 17026120 - 17026039
Alignment:
Q  148 gagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaa 224  Q
    |||| |||||||||||||||||||||| ||||||     ||||||||||||| ||||||||||||||||||||  |||||||    
T  17026120 gagtcgagtcgaacttgtctgagctcgactcgactcgataagaattggttcggctcgaaactcgactcgagtttgaaacgaa 17026039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 287
Target Start/End: Complemental strand, 11596570 - 11596410
Alignment:
Q  135 tagggctggaaatgagttgagtcgaacttgtctgagctcggctcgac-------------aagaattggttcgactcgaaactcgactcgagttcaaaac 221  Q
    ||||||||||||||||| |||||||||||||||||||| | ||||||             ||||||||||||  ||||||||     |||||||||||||    
T  11596570 tagggctggaaatgagtcgagtcgaacttgtctgagcttgactcgacgactcgactcgataagaattggttcagctcgaaac-----tcgagttcaaaac 11596476  T
Q  222 gaaccnnnnnnngggcttgagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
    |||||       ||||| || |||||||||||||||||||| ||  ||||||||||||||||||||    
T  11596475 gaacctttttttgggctcgatttcggctcgtttaaagttcacgagcaactcggttcggctcgttag 11596410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 18250781 - 18250685
Alignment:
Q  135 tagggctggaaatgagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaacc 226  Q
    |||||||||||| |||| ||||| ||||||| |||||||| ||||||     ||||||||||||| ||||||||| ||||||||||  |||||||||    
T  18250781 tagggctggaaacgagtcgagtcaaacttgtttgagctcgactcgactcgataagaattggttcggctcgaaacttgactcgagtttgaaacgaacc 18250685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 8110763 - 8110810
Alignment:
Q  134 gtagggctggaaatgagttgagtcgaacttgtctgagctcggctcgac 181  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  8110763 gtagggctggaaatgagttgagtcgaactcgtctgagcttggctcgac 8110810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 7539773 - 7539700
Alignment:
Q  148 gagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttc 216  Q
    ||||||||||||||| ||||||||||||||||||     ||||||||||||  ||||||||||| |||||||||    
T  7539773 gagttgagtcgaactcgtctgagctcggctcgactcgataagaattggttcagctcgaaactcggctcgagttc 7539700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 165 - 262
Target Start/End: Complemental strand, 23236882 - 23236785
Alignment:
Q  165 tctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnnngggcttgagttcggctcgtttaaagttca 262  Q
    |||||||||| ||||| ||||||| | ||| ||||||||||||||| | ||||| |||||||         |||||||||||||||||||||||||||    
T  23236882 tctgagctcgactcgataagaattagctcggctcgaaactcgactcaaattcaatacgaaccttttttctagcttgagttcggctcgtttaaagttca 23236785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 36926409 - 36926509
Alignment:
Q  135 tagggctggaaatgagttgagtcgaa-----cttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaa 224  Q
    ||||||||||||||||| ||||||||     | |||||||||||||||||||     ||||||||||||| ||||||||||| ||||||||| | |||||    
T  36926409 tagggctggaaatgagtcgagtcgaatcgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaa 36926508  T
Q  225 c 225  Q
    |    
T  36926509 c 36926509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 3931483 - 3931389
Alignment:
Q  141 tggaaatgagttgagtc-----gaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaac 225  Q
    |||||||||||||||||     |||| |||||||||||||||||||     ||||||||||||| ||||||||||| ||||||||| | ||||||    
T  3931483 tggaaatgagttgagtccaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaac 3931389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 287
Target Start/End: Original strand, 42071519 - 42071682
Alignment:
Q  134 gtagggctggaaatgagttgagtcgaact-----tgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacga 223  Q
    ||||||||| |||||||| |||||||||      |||||||||||||||||||     ||||||||||||| ||||||||||| ||||||||| | ||||    
T  42071519 gtagggctgaaaatgagtcgagtcgaaccaaacatgtctgagctcggctcgactcaataagaattggttcggctcgaaactcggctcgagttcgacacga 42071618  T
Q  224 accnnnnnnngggcttgagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
    ||          ||| ||||||||||||||||||||||| ||  |  |||||||| ||||||||    
T  42071619 actattttttcagctcgagttcggctcgtttaaagttcacgaacagttcggttcgactcgttag 42071682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 287
Target Start/End: Complemental strand, 8390274 - 8390116
Alignment:
Q  134 gtagggctggaaatgagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnn 228  Q
    ||||||||||||| |||| ||||||| |||||||||||||| ||||||     |||||| || ||  |||||||||| |||||| ||| | || ||||      
T  8390274 gtagggctggaaacgagtcgagtcgaccttgtctgagctcgactcgactcgataagaatcggctcagctcgaaactcaactcgaattcgatacaaacctt 8390175  T
Q  229 nnnnngggcttgagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
           ||| ||||| ||||||||||| ||||| ||  ||||||||||||||||||||    
T  8390174 tttcttagctcgagtttggctcgtttaatgttcacgaacaactcggttcggctcgttag 8390116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 15433732 - 15433779
Alignment:
Q  240 gagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
    ||||||||||||||||||||||||||  |  |||||||||||||||||    
T  15433732 gagttcggctcgtttaaagttcatgaacagttcggttcggctcgttag 15433779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 18740884 - 18740837
Alignment:
Q  240 gagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
    ||||||| ||||||||||||||| ||  ||||||||||||||||||||    
T  18740884 gagttcgactcgtttaaagttcacgaacaactcggttcggctcgttag 18740837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 26215762 - 26215817
Alignment:
Q  170 gctcggctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaac 225  Q
    ||||| ||||| ||||||||||||| ||||||||||| ||||||||| | ||||||    
T  26215762 gctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaac 26215817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 46574281 - 46574234
Alignment:
Q  240 gagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
    ||||||||||||||||||||||  ||  ||||||||||||||||||||    
T  46574281 gagttcggctcgtttaaagttcgcgaacaactcggttcggctcgttag 46574234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 10618133 - 10618183
Alignment:
Q  237 cttgagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
    |||||||||||||||||||||||||| ||  ||||| ||||| ||||||||    
T  10618133 cttgagttcggctcgtttaaagttcacgaacaactcagttcgcctcgttag 10618183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 35544197 - 35544147
Alignment:
Q  237 cttgagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
    |||||||||||||||||||||||||| ||  | ||||||| ||||||||||    
T  35544197 cttgagttcggctcgtttaaagttcacgaacagctcggtttggctcgttag 35544147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 35544300 - 35544226
Alignment:
Q  138 ggctggaaatgagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcga 207  Q
    |||||||||||||| ||||| ||| ||||||||||||  |||||     ||||||||||||| ||||||||||||    
T  35544300 ggctggaaatgagtcgagtcaaacatgtctgagctcgattcgactcgataagaattggttcggctcgaaactcga 35544226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 37333742 - 37333788
Alignment:
Q  170 gctcggctcgacaagaattggttcgactcgaaactcgactcgagttc 216  Q
    ||||| ||||| ||||||||||||| ||||||||||| |||||||||    
T  37333742 gctcgactcgataagaattggttcggctcgaaactcggctcgagttc 37333788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 39429505 - 39429554
Alignment:
Q  176 ctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaac 225  Q
    ||||| ||||||||||||||||||||||| || |||||||| | ||||||    
T  39429505 ctcgataagaattggttcgactcgaaacttgattcgagttcgacacgaac 39429554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 48633254 - 48633299
Alignment:
Q  135 tagggctggaaatgagttgagtcgaacttgtctgagctcggctcga 180  Q
    ||||| ||||||||||| |||||||||| ||||||||||| |||||    
T  48633254 tagggttggaaatgagtcgagtcgaactcgtctgagctcgactcga 48633299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 666329 - 666265
Alignment:
Q  157 cgaacttgtctgagctcgg-----ctcgacaagaattggttcgactcgaaactcgactcgagttc 216  Q
    ||||| |||||||||||||     ||||| ||||||||||||| ||||||||||| |||||||||    
T  666329 cgaacatgtctgagctcggcttgactcgataagaattggttcggctcgaaactcggctcgagttc 666265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 26719177 - 26719229
Alignment:
Q  148 gagttgagtcgaacttgtctgagctcggctcgacaagaattggttcgactcga 200  Q
    |||| ||||||||  |||||||||||| ||||| ||||||||||||| |||||    
T  26719177 gagtcgagtcgaatctgtctgagctcgactcgataagaattggttcggctcga 26719229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 135 - 287
Target Start/End: Original strand, 43966887 - 43967044
Alignment:
Q  135 tagggctggaaatgagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnn 229  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||     ||||||||||||| |||||||||||||||||||||||||||||         
T  43966887 tagggctggaaatgagtcgagtcgaacttgtctgaactcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcaaaacgaattttt 43966986  T
Q  230 nnnngggcttgagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
        ||||| ||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  43966987 ttttgggctcgagttcggctcgtttaaagttcacgagcaactcggttcggctcgttag 43967044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 39477423 - 39477518
Alignment:
Q  135 tagggctggaaatgagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaac 225  Q
    ||||||||||||||||| ||||||||  |||||||||||| ||||||     |||||||||||||| |||||||| | ||||| ||| ||||||||    
T  39477423 tagggctggaaatgagtcgagtcgaatctgtctgagctcgactcgactcgataagaattggttcgattcgaaacttggctcgaattcgaaacgaac 39477518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 25731983 - 25731903
Alignment:
Q  141 tggaaatgagttgagtcgaac-----ttgtctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagttc 216  Q
    ||||||||||| |||||||||     ||||||||||||| ||||| ||||||||||||| ||||||| ||||||| |||||    
T  25731983 tggaaatgagtcgagtcgaaccgaatttgtctgagctcgactcgataagaattggttcggctcgaaagtcgactcaagttc 25731903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 13784228 - 13784295
Alignment:
Q  148 gagttgagtcgaacttgtctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagtt 215  Q
    |||| ||||||||| |||||||||||| ||||| || |||||||||| ||| ||||| ||||||||||    
T  13784228 gagtcgagtcgaacctgtctgagctcgactcgataaaaattggttcggctcaaaacttgactcgagtt 13784295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 22563263 - 22563358
Alignment:
Q  135 tagggctggaaatgagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaac 225  Q
    ||||||||||||||||| || |||||  |||||||||||||||| ||     |||| || | ||| ||||||||||||||||||||||| ||||||    
T  22563263 tagggctggaaatgagtcgaatcgaatctgtctgagctcggctcaactcgataagattttgctcggctcgaaactcgactcgagttcaacacgaac 22563358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 22930957 - 22930898
Alignment:
Q  157 cgaacttgtctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagttc 216  Q
    ||||| ||||||| |||| ||||| ||||||||||||| ||||||||||| |||||||||    
T  22930957 cgaacctgtctgaactcgactcgataagaattggttcggctcgaaactcggctcgagttc 22930898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 226
Target Start/End: Complemental strand, 9413405 - 9413303
Alignment:
Q  134 gtagggctggaaatgagttgagtcgaact-----tgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacga 223  Q
    |||||||||||||||||| ||||||||||     |||||||||||| ||||||     ||||| ||||||| |||||||||||||| |||||| | ||||    
T  9413405 gtagggctggaaatgagtcgagtcgaactgaacttgtctgagctcgactcgactcgataagaaatggttcggctcgaaactcgacttgagttcgacacga 9413306  T
Q  224 acc 226  Q
    |||    
T  9413305 acc 9413303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 17865763 - 17865723
Alignment:
Q  176 ctcgacaagaattggttcgactcgaaactcgactcgagttc 216  Q
    ||||| ||||||||||||  |||||||||||||||||||||    
T  17865763 ctcgataagaattggttcagctcgaaactcgactcgagttc 17865723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 9e-36; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 135 - 287
Target Start/End: Complemental strand, 4984100 - 4983943
Alignment:
Q  135 tagggctggaaatgagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnn 229  Q
    ||||||||||||| ||| |||| ||||||||||||||||||||||||     ||||||||||||  || ||||||||||||||||||||||||||||       
T  4984100 tagggctggaaataagtcgagttgaacttgtctgagctcggctcgactcgataagaattggttcagcttgaaactcgactcgagttcaaaacgaaccttt 4984001  T
Q  230 nnnngggcttgagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
        ||||| ||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  4984000 ttttgggctcgagttcggctcgtttaaagttcacgagcaactcggttcggctcgttag 4983943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 148 - 287
Target Start/End: Original strand, 41782717 - 41782856
Alignment:
Q  148 gagttgagtcgaacttgtctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnnngggcttgagttcgg 247  Q
    |||| |||||||| |||| ||||||||| | || ||||||||||||| |||||||||||||||||||||||||||||||       ||||| ||||||||    
T  41782717 gagtcgagtcgaatttgtttgagctcggtttgataagaattggttcggctcgaaactcgactcgagttcaaaacgaacctttttttgggctcgagttcgg 41782816  T
Q  248 ctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
    ||||||||||||||| ||  ||||||||||||||||||||    
T  41782817 ctcgtttaaagttcacgagcaactcggttcggctcgttag 41782856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 148 - 287
Target Start/End: Original strand, 26217441 - 26217585
Alignment:
Q  148 gagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnnngggcttgag 242  Q
    |||| ||||||||||||||||||||||| |||||     ||||||||||||| |||||||||||||||||||||||||||||||       |||||  ||    
T  26217441 gagtcgagtcgaacttgtctgagctcggttcgactcaataagaattggttcggctcgaaactcgactcgagttcaaaacgaacctttttttgggctccag 26217540  T
Q  243 ttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
    |||||||||||||||||||| ||  |||||||||||| |||||||    
T  26217541 ttcggctcgtttaaagttcacgagaaactcggttcggttcgttag 26217585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 287
Target Start/End: Complemental strand, 11136785 - 11136641
Alignment:
Q  148 gagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnnngggcttgag 242  Q
    |||| ||||||||||||||||| ||||||||||      |||||| |||||| |||||||||||||||||||||||||||||||       ||||| |||    
T  11136785 gagtcgagtcgaacttgtctgaactcggctcgattcgataagaataggttcggctcgaaactcgactcgagttcaaaacgaacctttttttgggctcgag 11136686  T
Q  243 ttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
     |||| |||||||||||||| ||  ||||||||||||||||||||    
T  11136685 ctcggttcgtttaaagttcacgagcaactcggttcggctcgttag 11136641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 19715777 - 19715874
Alignment:
Q  134 gtagggctggaaatgagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaacc 226  Q
    |||||||||||||||||| ||||||||||||||||||||||  |||||     || |||||||||| ||||||||||||||||||||| || ||||||    
T  19715777 gtagggctggaaatgagtagagtcgaacttgtctgagctcgattcgactcgataataattggttcggctcgaaactcgactcgagttcgaagcgaacc 19715874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 10493379 - 10493475
Alignment:
Q  135 tagggctggaaatgagttgagtcgaa-----cttgtctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaacc 226  Q
    ||||||||||||||||| ||||||||     | |||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||| |||||||||    
T  10493379 tagggctggaaatgagtcgagtcgaatcgaacctgtctgagctcgactcgataagaaatggttcggctcgaaactcgactcgagttcgaaacgaacc 10493475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 27195428 - 27195524
Alignment:
Q  135 tagggctggaaatgagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaacc 226  Q
    ||||||||||||||||| ||||||||| |||||||||||| ||||||     ||||||||||||| |||||||||| |||||||||  |||||||||    
T  27195428 tagggctggaaatgagtcgagtcgaacatgtctgagctcgactcgactcaataagaattggttcggctcgaaactctactcgagtttgaaacgaacc 27195524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 285
Target Start/End: Complemental strand, 1841071 - 1840958
Alignment:
Q  171 ctcggctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnnngggcttgagttcggctcgtttaaagttcatgattaac 270  Q
    |||| ||||| ||||||||||||| ||||||||||||||||||||| | |||||||          || ||||||||||||||||||||||| ||  |||    
T  1841071 ctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatacgaaccctttttttaactcgagttcggctcgtttaaagttcacgaacaac 1840972  T
Q  271 tcggttcggctcgtt 285  Q
    || ||||||||||||    
T  1840971 tc-gttcggctcgtt 1840958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 3805514 - 3805413
Alignment:
Q  134 gtagggctggaaatgagttgagtcgaact-----tgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacga 223  Q
    |||||||||||||||||| |||||||||      |||||||||||||||||||     ||||||||||||| ||||||||||| ||||||||| | ||||    
T  3805514 gtagggctggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacga 3805415  T
Q  224 ac 225  Q
    ||    
T  3805414 ac 3805413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 287
Target Start/End: Complemental strand, 32157525 - 32157363
Alignment:
Q  135 tagggctggaaatgagttgagtcgaact-----tgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaa 224  Q
    ||||||||||||||||| ||||||||||     |||||| ||||||||||||     ||||||||||||| ||||||||| | ||||||||| | |||||    
T  32157525 tagggctggaaatgagtcgagtcgaactgaacctgtctgggctcggctcgactcgataagaattggttcggctcgaaacttggctcgagttcgacacgaa 32157426  T
Q  225 ccnnnnnnngggcttgagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
    |          ||| ||||||||||||||||||||||| ||  |  |||||||||||||||||    
T  32157425 ctattttttcagctcgagttcggctcgtttaaagttcacgaccagttcggttcggctcgttag 32157363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 286
Target Start/End: Complemental strand, 14501463 - 14501333
Alignment:
Q  153 gagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnnngggcttgagttcgg 247  Q
    |||||||| ||||||||||||||||||||     |||||| |||||| ||||||||||||||||||        | |||       ||||| ||||||||    
T  14501463 gagtcgaatttgtctgagctcggctcgactcgataagaatcggttcggctcgaaactcgactcgag--------ggacctttttttgggctcgagttcgg 14501372  T
Q  248 ctcgtttaaagttcatgattaactcggttcggctcgtta 286  Q
    ||||||||||||||| ||  |||||||||||||||||||    
T  14501371 ctcgtttaaagttcacgagcaactcggttcggctcgtta 14501333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 39408723 - 39408819
Alignment:
Q  134 gtagggctggaaatgagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaac 225  Q
    ||||||||| |||||||| |||||| || |||| |||||||  |||||     ||||||||||||| ||||||||||||||||||||| || |||||    
T  39408723 gtagggctgaaaatgagtcgagtcgtacctgtccgagctcgattcgactcgataagaattggttcggctcgaaactcgactcgagttcgaagcgaac 39408819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 26299464 - 26299537
Alignment:
Q  148 gagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttc 216  Q
    |||| ||||| ||||||||||||||||  |||||     ||||||||||||| |||||||||||||||||||||    
T  26299464 gagtcgagtcaaacttgtctgagctcgattcgactcgataagaattggttcggctcgaaactcgactcgagttc 26299537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 43385816 - 43385889
Alignment:
Q  148 gagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttc 216  Q
    |||| |||||||||| ||||||||||||||||||     ||||||||||||  ||||||||||| |||||||||    
T  43385816 gagtcgagtcgaactcgtctgagctcggctcgactcgataagaattggttcagctcgaaactcggctcgagttc 43385889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 285
Target Start/End: Original strand, 26297956 - 26298065
Alignment:
Q  176 ctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnnngggcttgagttcggctcgtttaaagttcatgattaactcggt 275  Q
    ||||| ||||||||||||| |||||||||||| |||||||| || ||||||          || ||||||||||||||||||||||| || ||  |||||    
T  26297956 ctcgataagaattggttcggctcgaaactcgattcgagttcgaagcgaacctttttttaaactcgagttcggctcgtttaaagttcacgaatagttcggt 26298055  T
Q  276 tcggctcgtt 285  Q
    || |||||||    
T  26298056 tcagctcgtt 26298065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 27905480 - 27905580
Alignment:
Q  135 tagggctggaaatgagttgagtcgaac-----ttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaa 224  Q
    ||||||||||||||||| |||||||||     || |||||||||||||||||     ||||||||||||| | ||||||||| ||||||||| | |||||    
T  27905480 tagggctggaaatgagtcgagtcgaaccgaacttatctgagctcggctcgacttgataagaattggttcggcacgaaactcggctcgagttcgacacgaa 27905579  T
Q  225 c 225  Q
    |    
T  27905580 c 27905580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 28430580 - 28430650
Alignment:
Q  156 tcgaacttgtctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaacc 226  Q
    ||||| || |||||||||| ||||| ||||||| ||||  ||| ||||||||||||||||| | |||||||    
T  28430580 tcgaatttatctgagctcgactcgataagaattagttcagctcaaaactcgactcgagttcgatacgaacc 28430650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 19283724 - 19283623
Alignment:
Q  135 tagggctggaaatgagttgagt-----cgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaa 224  Q
    ||||||||||||||||| ||||     ||||||| |||||||||| ||||||     |||||||||||   ||||||||||||||||||||| | |||||    
T  19283724 tagggctggaaatgagtcgagtagaatcgaacttatctgagctcgactcgactcgataagaattggtttagctcgaaactcgactcgagttcgatacgaa 19283625  T
Q  225 cc 226  Q
    ||    
T  19283624 cc 19283623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 27451079 - 27451030
Alignment:
Q  176 ctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaac 225  Q
    ||||| ||||||||||||| |||||||||| |||||||||| || |||||    
T  27451079 ctcgataagaattggttcggctcgaaactcaactcgagttcgaagcgaac 27451030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 34720152 - 34720103
Alignment:
Q  176 ctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaac 225  Q
    ||||| |||||||||||||  |||||||||||||||||||| || |||||    
T  34720152 ctcgataagaattggttcggttcgaaactcgactcgagttcgaagcgaac 34720103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 34856997 - 34857046
Alignment:
Q  176 ctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaac 225  Q
    ||||| ||||||||||||| ||||||||| ||||||||||| || |||||    
T  34856997 ctcgataagaattggttcggctcgaaacttgactcgagttcgaagcgaac 34857046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 39407032 - 39407072
Alignment:
Q  176 ctcgacaagaattggttcgactcgaaactcgactcgagttc 216  Q
    ||||| |||||||||||||  ||||||||||||||||||||    
T  39407032 ctcgataagaattggttcggttcgaaactcgactcgagttc 39407072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 135 - 287
Target Start/End: Complemental strand, 1543 - 1391
Alignment:
Q  135 tagggctggaaatgagttgagtcgaacttgtctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnnng 234  Q
    ||||||||||||||||| ||||||||| |||||||||||| ||||| ||||||||||||| ||||||||||||||||||||  |||||||||            
T  1543 tagggctggaaatgagtcgagtcgaacctgtctgagctcgactcgataagaattggttcggctcgaaactcgactcgagtttgaaacgaaccttttctct 1444  T
Q  235 ggcttgagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
      |||||||||||||||||||||||||| ||  |||| |||||||||||||||    
T  1443 aacttgagttcggctcgtttaaagttcacgaacaacttggttcggctcgttag 1391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 148 - 287
Target Start/End: Original strand, 33109850 - 33109994
Alignment:
Q  148 gagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnnngggcttgag 242  Q
    |||| |||||||||||||||||||||||||||||     ||||||||||||| |||||||||||||||||||||||||||||||       ||||| |||    
T  33109850 gagtcgagtcgaacttgtctgagctcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcaaaacgaacctttttttgggctcgag 33109949  T
Q  243 ttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
    |||||||||||||||||||||||  |||||| || ||||||||||    
T  33109950 ttcggctcgtttaaagttcatgagcaactcgatttggctcgttag 33109994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 135 - 287
Target Start/End: Original strand, 7957054 - 7957216
Alignment:
Q  135 tagggctggaaatgagttgagtcga-----acttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaa 224  Q
    ||||||||||||||||| |||||||     || |||||||||||||||||||     ||||||||||||| ||||||||||| ||||||||||| |||||    
T  7957054 tagggctggaaatgagtcgagtcgacccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcaacacgaa 7957153  T
Q  225 ccnnnnnnngggcttgagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
    |          ||| |||||| |||||||||||||||| ||  |  |||||||||||||||||    
T  7957154 ctattttttcagctcgagttcagctcgtttaaagttcacgaacagttcggttcggctcgttag 7957216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 12428076 - 12428143
Alignment:
Q  158 gaacttgtctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaac 225  Q
    |||| |||||||||||| ||||| |||||||| |||| ||||||||||||||||||||| | ||||||    
T  12428076 gaacctgtctgagctcgactcgataagaattgattcggctcgaaactcgactcgagttcgatacgaac 12428143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 287
Target Start/End: Original strand, 13311359 - 13311510
Alignment:
Q  141 tggaaatgagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnnngg 235  Q
    ||||||||||| |||||||   |||||||||||| ||||||     ||||||||||||||||| |||||||  |||||||| |||||||||             
T  13311359 tggaaatgagtcgagtcgagtctgtctgagctcgactcgactcgataagaattggttcgactcaaaactcggttcgagttcgaaacgaaccttttttcta 13311458  T
Q  236 gcttgagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
    ||| ||||||||||||||||||||||| ||   ||||| |||| ||||||||    
T  13311459 gctcgagttcggctcgtttaaagttcacgaaccactcgattcgactcgttag 13311510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 22295414 - 22295518
Alignment:
Q  183 agaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnnngggcttgagttcggctcgtttaaagttcatgattaactcggttcggctc 282  Q
    |||||||||||| ||||||||||||||||||||| |||| |||         |||| ||||||||||| |||||| |||| ||  |||||||||| ||||    
T  22295414 agaattggttcggctcgaaactcgactcgagttcgaaacaaactttttttccggctcgagttcggctcatttaaaattcacgagcaactcggttcagctc 22295513  T
Q  283 gttag 287  Q
    |||||    
T  22295514 gttag 22295518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 10346264 - 10346374
Alignment:
Q  177 tcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnnngggcttgagttcggctcgtttaaagttcatgattaactcggtt 276  Q
    |||| ||||||||||||| ||||||||||| ||||||||| | ||||||          ||| ||||||||||||||||||||||| ||  |  ||||||    
T  10346264 tcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaagttcacgaacagttcggtt 10346363  T
Q  277 cggctcgttag 287  Q
    |||||||||||    
T  10346364 cggctcgttag 10346374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 26643898 - 26643978
Alignment:
Q  135 tagggctggaaatgagttgagtcgaacttgtctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagtt 215  Q
    ||||||||||||||||| ||||||||| |||||| ||||| ||||  ||||||||| |||  ||||| ||||  |||||||    
T  26643898 tagggctggaaatgagtcgagtcgaacctgtctgtgctcgactcgttaagaattggctcggttcgaacctcgtttcgagtt 26643978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 26749864 - 26749944
Alignment:
Q  135 tagggctggaaatgagttgagtcgaacttgtctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagtt 215  Q
    ||||||||||||||||| ||||||||| |||||| ||||| ||||  ||||||||| |||  ||||| ||||  |||||||    
T  26749864 tagggctggaaatgagtcgagtcgaacctgtctgtgctcgactcgttaagaattggctcggttcgaacctcgtttcgagtt 26749944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 11460893 - 11460850
Alignment:
Q  137 gggctggaaatgagttgagtcgaacttgtctgagctcggctcga 180  Q
    ||||||||||||||||||||||||||||| ||| |||| |||||    
T  11460893 gggctggaaatgagttgagtcgaacttgtttgaactcgactcga 11460850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 18961890 - 18961936
Alignment:
Q  170 gctcggctcgacaagaattggttcgactcgaaactcgactcgagttc 216  Q
    ||||| ||||| ||||||||||||| ||||||||||| |||||||||    
T  18961890 gctcgactcgataagaattggttcggctcgaaactcggctcgagttc 18961936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 6998603 - 6998667
Alignment:
Q  157 cgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttc 216  Q
    ||||| |||||||||||||||||||     ||||||| | ||| |||||||||||||||||||||    
T  6998603 cgaacctgtctgagctcggctcgactcgataagaatttgctcggctcgaaactcgactcgagttc 6998667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 135 - 287
Target Start/End: Original strand, 44377615 - 44377767
Alignment:
Q  135 tagggctggaaatgagttgagtcgaacttgtctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnnng 234  Q
    ||||||||||||||||| ||||||||| |||||||||||| ||||| ||||||||||||| ||||||||||||||||||||  |||||||||            
T  44377615 tagggctggaaatgagtcgagtcgaacctgtctgagctcgactcgataagaattggttcggctcgaaactcgactcgagtttgaaacgaaccttttctct 44377714  T
Q  235 ggcttgagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
      |||||||||||||||||||||||||| ||  |||| |||||||||||||||    
T  44377715 aacttgagttcggctcgtttaaagttcacgaacaacttggttcggctcgttag 44377767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 148 - 287
Target Start/End: Original strand, 52705611 - 52705755
Alignment:
Q  148 gagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnnngggcttgag 242  Q
    |||| |||||||||||||||||||||||||||||     ||||||||||||| |||||||||||| ||||||| |||| |||||       ||||| |||    
T  52705611 gagtcgagtcgaacttgtctgagctcggctcgactcgataagaattggttcggctcgaaactcgattcgagtttaaaatgaacctttttttgggctcgag 52705710  T
Q  243 ttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
    |||||||||||||||||| | ||  ||||||||||||||||||||    
T  52705711 ttcggctcgtttaaagtttacgagcaactcggttcggctcgttag 52705755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 16743249 - 16743169
Alignment:
Q  135 tagggctggaaatgagttgagtcgaacttgtctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagtt 215  Q
    |||||||||||||| ||  ||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||    
T  16743249 tagggctggaaatgtgtcaagtcgaacttgtctgagctcgactcgataagaattggttcggctcgaaactcgactcaagtt 16743169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 262
Target Start/End: Complemental strand, 50711572 - 50711444
Alignment:
Q  134 gtagggctggaaatgagttgagtcgaacttgtctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnnn 233  Q
    ||||| |||||||| ||| ||||||||  |||||||||||| ||||| ||||||||||||| ||| |||||||  |||||||||||||||| |           
T  50711572 gtaggactggaaataagtcgagtcgaatctgtctgagctcgactcgataagaattggttcggctcaaaactcggttcgagttcaaaacgaatcttttttc 50711473  T
Q  234 gggcttgagttcggctcgtttaaagttca 262  Q
      ||| |||||||||||||||||||||||    
T  50711472 tagctcgagttcggctcgtttaaagttca 50711444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 24009565 - 24009469
Alignment:
Q  135 tagggctggaaatgagttgagtcgaacttgtctgagctcggc-----tcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaacc 226  Q
    ||||||||||||| ||| ||||||||  | |||||||||| |     |||| |||||||||||| ||||||||| ||||||||||||||||||||||    
T  24009565 tagggctggaaattagtcgagtcgaatctatctgagctcgacacgattcgataagaattggttcaactcgaaacccgactcgagttcaaaacgaacc 24009469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 7505442 - 7505513
Alignment:
Q  148 gagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagt 214  Q
    |||| |||||||||||||||||||||||||||||     |||||||| |||| |||||||||||||||||||    
T  7505442 gagtcgagtcgaacttgtctgagctcggctcgactcgataagaattgattcggctcgaaactcgactcgagt 7505513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 9469427 - 9469527
Alignment:
Q  134 gtagggctggaaatgagttgagtcga----acttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaa 224  Q
    |||||||||||||||||| |||||||    || |||||||||||||||||||     ||||||||||||| ||||||||||| ||||||||| | |||||    
T  9469427 gtagggctggaaatgagtcgagtcgatcgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaa 9469526  T
Q  225 c 225  Q
    |    
T  9469527 c 9469527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 46945304 - 46945225
Alignment:
Q  141 tggaaatgagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagtt 215  Q
    ||||||||||| ||||||||| |||||||||||| ||| ||     ||||||||||||| ||||||||||||||||||||    
T  46945304 tggaaatgagtcgagtcgaacctgtctgagctcgactcaactcgataagaattggttcggctcgaaactcgactcgagtt 46945225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 51409249 - 51409154
Alignment:
Q  135 tagggctggaaatgagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaac 225  Q
    ||||| ||||||| ||| |||||||||||||||||||||| ||||||     ||||||| ||||| |||||||||||| |||||||| | ||||||    
T  51409249 tagggttggaaataagtcgagtcgaacttgtctgagctcgactcgactcgataagaatttgttcggctcgaaactcgattcgagttcgacacgaac 51409154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 32398513 - 32398467
Alignment:
Q  135 tagggctggaaatgagttgagtcgaacttgtctgagctcggctcgac 181  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||    
T  32398513 tagggctggaaatgagtcgagtcgaacttgtctgagctcgactcgac 32398467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 287
Target Start/End: Original strand, 49820423 - 49820540
Alignment:
Q  170 gctcggctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnnngggcttgagttcggctcgtttaaagttcatgattaa 269  Q
    ||||| ||||| ||||||||||||| ||||||||||||||||||||| | ||||||          ||| ||||||||||||||||||||||| ||  |     
T  49820423 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaagttcacgaacag 49820522  T
Q  270 ctcggttcggctcgttag 287  Q
     || ||||||||||||||    
T  49820523 ttcagttcggctcgttag 49820540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 287
Target Start/End: Original strand, 50605482 - 50605617
Alignment:
Q  157 cgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnnngggcttgagttcggctcg 251  Q
    ||||| |||||||||||||||||||     ||||||||||||| ||||||||||| ||||||||| | ||||||          ||| |||||||||| |    
T  50605482 cgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttcagctcgagttcggcttg 50605581  T
Q  252 tttaaagttcatgattaactcggttcggctcgttag 287  Q
    ||||||||||| ||  |  |||||||||||||||||    
T  50605582 tttaaagttcacgaacagttcggttcggctcgttag 50605617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 28266851 - 28266784
Alignment:
Q  158 gaacttgtctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaac 225  Q
    |||| |||||||||||| || || ||||||| | ||| ||||||||||||||||||||| | ||||||    
T  28266851 gaacatgtctgagctcgactggataagaatttgctcggctcgaaactcgactcgagttcgacacgaac 28266784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 45674407 - 45674454
Alignment:
Q  240 gagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
    ||||||||||||||||||||||| || ||  |||||||||||||||||    
T  45674407 gagttcggctcgtttaaagttcacgaatagttcggttcggctcgttag 45674454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 287
Target Start/End: Original strand, 53369113 - 53369224
Alignment:
Q  176 ctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnnngggcttgagttcggctcgtttaaagttcatgattaactcggt 275  Q
    ||||| ||||||||||||| ||||||||||| ||||||||| | ||||||          ||| ||||||||||||||||||||||| ||     |||||    
T  53369113 ctcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaagttcacgaactgttcggt 53369212  T
Q  276 tcggctcgttag 287  Q
    ||||||||||||    
T  53369213 tcggctcgttag 53369224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 48977056 - 48977166
Alignment:
Q  177 tcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnnngggcttgagttcggctcgtttaaagttcatgattaactcggtt 276  Q
    |||| ||||||||||||| ||||||||||| ||||||||| | ||||||          ||| |||||||||||||||||| |||| ||  || | ||||    
T  48977056 tcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaaattcacgaacaatttggtt 48977155  T
Q  277 cggctcgttag 287  Q
    |||||||||||    
T  48977156 cggctcgttag 48977166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 43386534 - 43386634
Alignment:
Q  135 tagggctggaaatgagttgagtcgaact-----tgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaa 224  Q
    ||||||||||||||||| ||||||||||     |||||||||||| ||||||     ||||||| | ||| || |||||||||||||||||| | |||||    
T  43386534 tagggctggaaatgagtcgagtcgaactgaacctgtctgagctcgactcgactcgataagaatttgctcggcttgaaactcgactcgagttcgacacgaa 43386633  T
Q  225 c 225  Q
    |    
T  43386634 c 43386634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 148 - 287
Target Start/End: Complemental strand, 2647722 - 2647578
Alignment:
Q  148 gagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnnngggcttgag 242  Q
    |||| |||||||| |||||||| |||||||||||     ||||||||||||| |||||||||||||||||||||||||| ||||       ||||| |||    
T  2647722 gagtcgagtcgaatttgtctgaactcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcaaaaccaacctttttttgggctcgag 2647623  T
Q  243 ttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||    
T  2647622 ttcggctcgtttaaagttcacgagcaactcggttcggctcgttag 2647578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 40675178 - 40675266
Alignment:
Q  138 ggctggaaatgagttgagtcgaacttgtctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaacc 226  Q
    |||| ||||||||| ||||||||||||||||||||||  |||| ||||||||||||| ||||||||||||||||||||| | |||||||    
T  40675178 ggctagaaatgagtcgagtcgaacttgtctgagctcgattcgataagaattggttcggctcgaaactcgactcgagttcgatacgaacc 40675266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 135 - 287
Target Start/End: Original strand, 36538077 - 36538239
Alignment:
Q  135 tagggctggaaatgagttgagtcgaact-----tgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaa 224  Q
    ||||||||||||||||| ||||||||||     |||||||||||||||||||     ||||||||||||| ||||||||||| ||||||||| | |||||    
T  36538077 tagggctggaaatgagtcgagtcgaactgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaa 36538176  T
Q  225 ccnnnnnnngggcttgagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
    |          ||| ||||| ||||||||||||||||| ||  |  |||||||||||||||||    
T  36538177 ctattttttcagctcgagtttggctcgtttaaagttcacgaacagttcggttcggctcgttag 36538239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 287
Target Start/End: Original strand, 27633142 - 27633304
Alignment:
Q  135 tagggctggaaatgagttgagtcgaact-----tgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaa 224  Q
    ||||||||||||||||| |||||||||      || ||||||||||||||||     ||||||||||||| ||||||||||| ||| ||||||| || ||    
T  27633142 tagggctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgacttgataagaattggttcggctcgaaactcggctcaagttcaacacaaa 27633241  T
Q  225 ccnnnnnnngggcttgagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
    |          ||| ||||||||||||||||||||||| ||  |  |||||||||||||||||    
T  27633242 ctattttttcagctcgagttcggctcgtttaaagttcacgaacagttcggttcggctcgttag 27633304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 9963171 - 9963215
Alignment:
Q  135 tagggctggaaatgagttgagtcgaacttgtctgagctcggctcg 179  Q
    ||||||||||||||||| ||| |||||||||||||||||| ||||    
T  9963171 tagggctggaaatgagtcgagacgaacttgtctgagctcgactcg 9963215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 44741436 - 44741336
Alignment:
Q  135 tagggctggaaatgagttgagt-----cgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaa 224  Q
    ||||| ||||||||||||||||     ||||| |||||||||||||||||||     ||||||| | ||| ||||||||||||||||||||| | |||||    
T  44741436 tagggttggaaatgagttgagttgaaccgaacctgtctgagctcggctcgacttgataagaatttgctcggctcgaaactcgactcgagttcgacacgaa 44741337  T
Q  225 c 225  Q
    |    
T  44741336 c 44741336  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 33830993 - 33831040
Alignment:
Q  240 gagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
    ||||||||||||||||||||||| ||  || |||||||||||||||||    
T  33830993 gagttcggctcgtttaaagttcacgaacaattcggttcggctcgttag 33831040  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 1093994 - 1094044
Alignment:
Q  237 cttgagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
    |||||||||||||||||||||||||  ||   |||||||||||||||||||    
T  1093994 cttgagttcggctcgtttaaagttcgcgaactactcggttcggctcgttag 1094044  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 20986062 - 20986164
Alignment:
Q  133 cgtagggctggaaatgagttgagtcgaact-----tgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacg 222  Q
    |||||| |||||||||||| |||||||||      |||||||||||||||||||     ||||||||||||| ||||||||||| || |||||| | |||    
T  20986062 cgtaggactggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggcttgagttcgacacg 20986161  T
Q  223 aac 225  Q
    |||    
T  20986162 aac 20986164  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 12139417 - 12139466
Alignment:
Q  176 ctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaac 225  Q
    ||||| ||||||||||||| ||||||||||| ||||||||| | ||||||    
T  12139417 ctcgataagaattggttcggctcgaaactcggctcgagttcgacacgaac 12139466  T

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Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 148 - 287
Target Start/End: Original strand, 5418061 - 5418205
Alignment:
Q  148 gagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaaccnnnnnnngggcttgag 242  Q
    |||| |||||||||||||||||| |||||| |||     ||||||||||||| |||||||||||||||||||||||||||||||       ||||| ||     
T  5418061 gagtcgagtcgaacttgtctgagttcggcttgactcgataagaattggttcggctcgaaactcgactcgagttcaaaacgaacctttttttgggctcgat 5418160  T
Q  243 ttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
    ||| |||||||||||||||| ||  ||||||||||||||||||||    
T  5418161 ttcagctcgtttaaagttcacgagcaactcggttcggctcgttag 5418205  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 40942902 - 40942996
Alignment:
Q  137 gggctggaaatgagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaacc 226  Q
    ||||||||||||||| ||||||||  |||||||||||| ||| ||     ||||||||||||||||||||||||| |||||||||||||||||||    
T  40942902 gggctggaaatgagtcgagtcgaatctgtctgagctcgactcaactcgataagaattggttcgactcgaaactcggctcgagttcaaaacgaacc 40942996  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 7521848 - 7521781
Alignment:
Q  157 cgaacttgtctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaa 224  Q
    ||||||| |||||||| | ||||| || |||| ||||| ||||||||||||||||||||| |||||||    
T  7521848 cgaacttatctgagctagactcgataaaaattcgttcggctcgaaactcgactcgagttcgaaacgaa 7521781  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 25252920 - 25252974
Alignment:
Q  171 ctcggctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaac 225  Q
    |||| ||||| ||||||||||||| ||| ||||||||||||||||||| ||||||    
T  25252920 ctcgactcgataagaattggttcggctcaaaactcgactcgagttcaatacgaac 25252974  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 39471219 - 39471119
Alignment:
Q  135 tagggctggaaatgagttgagtcgaact-----tgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaa 224  Q
    ||||||||||||||||| |||||||||      ||||||| |||||||||||     ||||||||||||| ||||||||||| ||||||||| | |||||    
T  39471219 tagggctggaaatgagtcgagtcgaaccgaacctgtctgaactcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaa 39471120  T
Q  225 c 225  Q
    |    
T  39471119 c 39471119  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 12710175 - 12710222
Alignment:
Q  240 gagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
    ||||||||||||||||||||||  ||  ||||||||||||||||||||    
T  12710175 gagttcggctcgtttaaagttcgcgaacaactcggttcggctcgttag 12710222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 20407845 - 20407790
Alignment:
Q  170 gctcggctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaac 225  Q
    ||||| ||||| ||| ||||||||| ||||||||||||||||||||| | ||||||    
T  20407845 gctcgactcgataagtattggttcggctcgaaactcgactcgagttcgatacgaac 20407790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 20661790 - 20661837
Alignment:
Q  240 gagttcggctcgtttaaagttcatgattaactcggttcggctcgttag 287  Q
    |||||| |||||||||||||||| ||  ||||||||||||||||||||    
T  20661790 gagttcagctcgtttaaagttcacgaacaactcggttcggctcgttag 20661837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 39133822 - 39133869
Alignment:
Q  169 agctcggctcgacaagaattggttcgactcgaaactcgactcgagttc 216  Q
    |||||| ||||| ||||||||||||| ||||||||||| |||||||||    
T  39133822 agctcgactcgataagaattggttcggctcgaaactcggctcgagttc 39133869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 226
Target Start/End: Original strand, 7834080 - 7834158
Alignment:
Q  148 gagttgagtcgaacttgtctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaacc 226  Q
    |||| ||||||||| ||||||| |||| ||||| ||||||||||||  ||| |||||| | |||||||  |||||||||    
T  7834080 gagtcgagtcgaacctgtctgaactcgactcgataagaattggttcagctcaaaactcaattcgagtttgaaacgaacc 7834158  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 26050157 - 26050111
Alignment:
Q  240 gagttcggctcgtttaaagttcatgattaactcggttcggctcgtta 286  Q
    ||||||||||||||||||||||  ||  |||||||||||||||||||    
T  26050157 gagttcggctcgtttaaagttcgcgaacaactcggttcggctcgtta 26050111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 27040666 - 27040592
Alignment:
Q  148 gagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttca 217  Q
    |||| ||||||||||||| |||||||  ||||||     |||| |||||||| ||||||||||||||||||||||    
T  27040666 gagtcgagtcgaacttgtttgagctcaactcgactcgttaagatttggttcggctcgaaactcgactcgagttca 27040592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 46294359 - 46294289
Alignment:
Q  148 gagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgag 213  Q
    |||| |||||||||| ||||||||||||||||||     ||||||||||||   |||||||||||||||||    
T  46294359 gagtcgagtcgaactcgtctgagctcggctcgacgcaataagaattggttcagttcgaaactcgactcgag 46294289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 38644337 - 38644264
Alignment:
Q  157 cgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaac 225  Q
    ||||| |||||||||||||||||||     ||||||| ||||| ||| ||||||||||||||||| | ||||||    
T  38644337 cgaacctgtctgagctcggctcgactagataagaatttgttcggctcaaaactcgactcgagttcgacacgaac 38644264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 15823289 - 15823229
Alignment:
Q  156 tcgaacttgtctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagttc 216  Q
    |||||| | |||||||||||||||| || | || | ||| |||||||||||||||||||||    
T  15823289 tcgaacctatctgagctcggctcgataaaattttgctcggctcgaaactcgactcgagttc 15823229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 52934231 - 52934327
Alignment:
Q  135 tagggctggaaatgagttgagtcgaacttgtctgagctcggctcgac-----aagaattggttcgactcgaaactcgactcgagttcaaaacgaacc 226  Q
    ||||||||||||||||| ||||||||    |||||||||| ||||||     ||||||||  ||| |||||||||||||| |||||| | |||||||    
T  52934231 tagggctggaaatgagtcgagtcgaatccatctgagctcgactcgactcgataagaattgactcggctcgaaactcgacttgagttcgatacgaacc 52934327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0746 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0746
Description:

Target: scaffold0746; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 5388 - 5333
Alignment:
Q  163 tgtctgagctcggctcgacaagaattggttcgactcgaaactcgactcgagttcaa 218  Q
    ||||||||||||  |||| |||||||||||||  |||||| |||||||||||||||    
T  5388 tgtctgagctcgattcgataagaattggttcggttcgaaagtcgactcgagttcaa 5333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 26539 - 26593
Alignment:
Q  171 ctcggctcgacaagaattggttcgactcgaaactcgactcgagttcaaaacgaac 225  Q
    |||| ||||| ||||||||||||  ||||||| ||||||||||||| ||||||||    
T  26539 ctcgactcgataagaattggttcagctcgaaattcgactcgagttcgaaacgaac 26593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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