View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3107_high_44 (Length: 299)

Name: NF3107_high_44
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3107_high_44
NF3107_high_44
[»] chr3 (9 HSPs)
chr3 (1-285)||(3745725-3746009)
chr3 (13-141)||(4158009-4158137)
chr3 (5-144)||(3754458-3754597)
chr3 (13-144)||(4142199-4142330)
chr3 (1-134)||(2678449-2678582)
chr3 (1-132)||(2686365-2686496)
chr3 (169-208)||(4142346-4142385)
chr3 (1-44)||(12133037-12133080)
chr3 (172-208)||(3754403-3754439)
[»] chr5 (2 HSPs)
chr5 (13-144)||(11081668-11081799)
chr5 (1-139)||(1427743-1427881)
[»] chr7 (1 HSPs)
chr7 (1-136)||(1078228-1078363)
[»] chr2 (1 HSPs)
chr2 (253-281)||(11237414-11237442)


Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 3746009 - 3745725
Alignment:
Q  1 tcatcaccagaagtcacgcacaagcaatcccttaaaacacccaaagacgacaagtcacacacatctacccctccaatactaggaggtgaaatcttttgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3746009 tcatcaccagaagtcacgcacaagcaatcccttaaaacacccaaagacgacaagtcacacacatctatccctccaatactaggaggtgaaatcttttgaa 3745910  T
Q  101 aagtctcctttgccaaatcaaaagaaacaataaagcatggacataccctacccgattttannnnnnnngagaacaaccaattaatagtgccactcacaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  3745909 aagtctcctttgccaaatcaaaagaaacaataaagcatggacataccctacccgattttattttttttgagaacaaccaattaatagtgccactcacaaa 3745810  T
Q  201 tttcccctatcgctcaacaggagcaccgccaagaggatactcctgaatgcttcttctccaaaaattggtacccaaagtatgaact 285  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3745809 tttccccgatcgctcaaaaggagcaccgccaagaggatactcctgagtgcttcttctccaaaaattggtacccaaagtatgaact 3745725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 4158009 - 4158137
Alignment:
Q  13 gtcacgcacaagcaatcccttaaaacacccaaagacgacaagtcacacacatctacccctccaatactaggaggtgaaatcttttgaaaagtctcctttg 112  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||| | | |||||||||||||||||||| ||| ||||||||    
T  4158009 gtcacgcacaagcaatccctcaaaacacccaaagccgacaagtcacacacatccacccctcccaaattaggaggtgaaatcttttgataagactcctttg 4158108  T
Q  113 ccaaatcaaaagaaacaataaagcatgga 141  Q
    |||||||||| ||||||||||||||||||    
T  4158109 ccaaatcaaatgaaacaataaagcatgga 4158137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 3754597 - 3754458
Alignment:
Q  5 caccagaagtcacgcacaagcaatcccttaaaacacccaaagacgacaagtcacacacatctacccctccaatactaggaggtgaaatcttttgaaaagt 104  Q
    |||||||||||||||||||||||||||| ||||||| ||||| ||||| |||||||||||| |||||||| | | |||||||||||||||||||| | |     
T  3754597 caccagaagtcacgcacaagcaatccctcaaaacactcaaagccgacatgtcacacacatccacccctcccaaattaggaggtgaaatcttttgatatga 3754498  T
Q  105 ctcctttgccaaatcaaaagaaacaataaagcatggacat 144  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  3754497 ctcctttgccaaatcaaaagaaacaataaagcgtggacat 3754458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 4142199 - 4142330
Alignment:
Q  13 gtcacgcacaagcaatcccttaaaacacccaaagacgacaagtcacacacatctacccctccaatactaggaggtgaaatcttttgaaaagtctcctttg 112  Q
    |||||||||||||||||||| ||||||||||||  |||||||||||  ||||| |||||||| | | |||||||||||||||||||| ||| ||||||||    
T  4142199 gtcacgcacaagcaatccctcaaaacacccaaaaccgacaagtcaccaacatccacccctcccaaattaggaggtgaaatcttttgataagactcctttg 4142298  T
Q  113 ccaaatcaaaagaaacaataaagcatggacat 144  Q
    ||||||||||||||||||||||||||||||||    
T  4142299 ccaaatcaaaagaaacaataaagcatggacat 4142330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 2678449 - 2678582
Alignment:
Q  1 tcatcaccagaagtcacgcacaagcaatcccttaaaacacccaaagacgacaagtcacacacatctacccctccaatactaggaggtgaaatcttttgaa 100  Q
    ||||||||| |||||| ||||||||||||| | ||||||||||| |  | ||  | || ||||| | ||||||||  |||||||||||| | |||||||     
T  2678449 tcatcaccacaagtcaagcacaagcaatccttcaaaacacccaaggtaggcattttacccacatttgcccctccataactaggaggtgatagcttttgat 2678548  T
Q  101 aagtctcctttgccaaatcaaaagaaacaataaa 134  Q
    ||| ||| ||||||||||||||||||||||||||    
T  2678549 aagactcttttgccaaatcaaaagaaacaataaa 2678582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 2686365 - 2686496
Alignment:
Q  1 tcatcaccagaagtcacgcacaagcaatcccttaaaacacccaaagacgacaagtcacacacatctacccctccaatactaggaggtgaaatcttttgaa 100  Q
    ||||||||| |  ||| |||||| |||||||| ||||||||||| |    || || ||| |||||||||||||||  ||||||||| || |||||||||     
T  2686365 tcatcaccacagatcaagcacaaacaatccctcaaaacacccaaggtaagcatgttacagacatctacccctccataactaggaggggatatcttttgat 2686464  T
Q  101 aagtctcctttgccaaatcaaaagaaacaata 132  Q
    ||| ||| ||||||||||||||||||||||||    
T  2686465 aagactcttttgccaaatcaaaagaaacaata 2686496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 4142346 - 4142385
Alignment:
Q  169 gagaacaaccaattaatagtgccactcacaaatttcccct 208  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  4142346 gagaacaaccaattaattgtgccactcacaaattccccct 4142385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 12133080 - 12133037
Alignment:
Q  1 tcatcaccagaagtcacgcacaagcaatcccttaaaacacccaa 44  Q
    ||||||| |||||||| |||||||||||||||||| ||||||||    
T  12133080 tcatcacgagaagtcaggcacaagcaatcccttaacacacccaa 12133037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 3754439 - 3754403
Alignment:
Q  172 aacaaccaattaatagtgccactcacaaatttcccct 208  Q
    |||||||||||||| |||||||||||||||| |||||    
T  3754439 aacaaccaattaattgtgccactcacaaattccccct 3754403  T

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Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 11081799 - 11081668
Alignment:
Q  13 gtcacgcacaagcaatcccttaaaacacccaaagacgacaagtcacacacatctacccctccaatactaggaggtgaaatcttttgaaaagtctcctttg 112  Q
    ||||| |||||||||||||| ||||||||||||| |||||||| || |||||| |||||| | | | |||||||||||||||||||| ||| ||||||||    
T  11081799 gtcacacacaagcaatccctcaaaacacccaaagccgacaagttacgcacatccaccccttccaaattaggaggtgaaatcttttgataagactcctttg 11081700  T
Q  113 ccaaatcaaaagaaacaataaagcatggacat 144  Q
    ||||||| ||| |||||||||||| |||||||    
T  11081699 ccaaatcgaaacaaacaataaagcgtggacat 11081668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 1427743 - 1427881
Alignment:
Q  1 tcatcaccagaagtcacgcacaagcaatcccttaaaacacccaaagacgacaagtcacacacatctacccctccaatactaggaggtgaaatcttttgaa 100  Q
    ||||||||| ||| || | ||||| || |||||| ||||||||| | ||| ||| ||| ||||||||| ||||||  | | ||| |  ||| |||||||     
T  1427743 tcatcaccataagacaaggacaagaaaccccttagaacacccaaggtcgagaagccactcacatctactcctccacgatttggaagcaaaaccttttgat 1427842  T
Q  101 aagtctcctttgccaaatcaaaagaaacaataaagcatg 139  Q
    ||| ||||||  |||||||||||| ||||||||||||||    
T  1427843 aagactccttccccaaatcaaaagcaacaataaagcatg 1427881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 1078228 - 1078363
Alignment:
Q  1 tcatcaccagaagtcacgcacaagcaatcccttaaaacacccaaagacgacaagtcacacacatctacccctccaatactaggaggtgaaatcttttgaa 100  Q
    ||||||| ||||| || ||||||||||||||| || |||||||| |   | |||| |||||||||||||||||||  |  ||||||  ||| |||||||     
T  1078228 tcatcacgagaagccaggcacaagcaatccctcaacacacccaaggctaagaagtgacacacatctacccctccataatcaggaggcaaaaccttttgat 1078327  T
Q  101 aagtctcctttgccaaatcaaaagaaacaataaagc 136  Q
    |||  || ||| ||||||||||||||||||||||||    
T  1078328 aagattcttttcccaaatcaaaagaaacaataaagc 1078363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Complemental strand, 11237442 - 11237414
Alignment:
Q  253 cttctccaaaaattggtacccaaagtatg 281  Q
    |||||||||||||||||||||||||||||    
T  11237442 cttctccaaaaattggtacccaaagtatg 11237414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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