View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_high_45 (Length: 286)
Name: NF3107_high_45
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_high_45 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 26122249 - 26122517
Alignment:
| Q |
1 |
tacaaaggcatcagagtttgcattgttccaattttcgcatagcacacttgtatcaaaagctcgatcgtcacacactttttggtcatgatgcaattgcaat |
100 |
Q |
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| T |
26122249 |
tacaaaagcatcagagtttgcatttttccaattttcacacagcacacttgtatcaaaagctcgatcgtcacacactttttggtcatgatgcaattgcaat |
26122348 |
T |
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| Q |
101 |
cttactaacaatttgtaaaagggaaataacacgtgatccttggtgatcgttgtgtaatagtcacattttgaggtttataatccccagttttatcctaaac |
200 |
Q |
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| T |
26122349 |
cttaccaacaatctgtaaaagggaaataacac----------gtgatcgttgtgtaatagtcacattttaaggtttataatccccaaatttatcctaaac |
26122438 |
T |
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| Q |
201 |
tcaatagcttcatcttcatctatgtttgattcatcattgaaaagaagacaaaagtcattgccgtcctgggtctctgctg |
279 |
Q |
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| T |
26122439 |
tcaatagctttatcttcatctatgtttgattcatcattgaaaagaagacaaaagtcattgcggtgctgagtctctgctg |
26122517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 30 - 260
Target Start/End: Original strand, 26131577 - 26131793
Alignment:
| Q |
30 |
aattttcgcatagcacacttgtatcaaaagctcgatcgtcacacactttttggtcatgatgcaattgcaatcttactaacaatttgtaaaagggaaataa |
129 |
Q |
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| T |
26131577 |
aattttcacatagcacacctgtatcaaaagctcgaccgtcacacactttttggtcataatgcaatttcaatcttactaacaaattgtaaacgggaagtaa |
26131676 |
T |
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| Q |
130 |
cacgtgatccttggtgatcgttgtgtaatagtcacattttgaggtttataatccccagttttatcctaaactcaatagcttcatcttcatctatgtttga |
229 |
Q |
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| T |
26131677 |
tacgtt--------------ttgtgcaacaaccacatcttaaggtttataatcccaaattttatctcaaattcaatagcttcatcttcatctatgtttga |
26131762 |
T |
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| Q |
230 |
ttcatcattgaaaagaagacaaaagtcattg |
260 |
Q |
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| T |
26131763 |
ttcatcattgaaaagaagacaaaagtcattg |
26131793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 252
Target Start/End: Original strand, 27502653 - 27502682
Alignment:
| Q |
223 |
tgtttgattcatcattgaaaagaagacaaa |
252 |
Q |
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| T |
27502653 |
tgtttgattcatcattgaaaagaagacaaa |
27502682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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