View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3107_high_46 (Length: 285)

Name: NF3107_high_46
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3107_high_46
NF3107_high_46
[»] chr6 (2 HSPs)
chr6 (13-271)||(20749851-20750109)
chr6 (13-271)||(20761863-20762115)


Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 20750109 - 20749851
Alignment:
Q  13 aaaatcctaggagcggcttctaatcaagttcaattcatgattggaaaaggagcacaagaattattggtgttaaacaaagctgattttgtgttaattgatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20750109 aaaatcctaggagcggcttctaatcaagttcaattcatgattggaaaaggagcacaagaattattggtgttaaacaaagctgattttgtgttaattgatt 20750010  T
Q  113 gcaaccttatgaatcatgaagagattgttaaatgtgttcaaattggttgttataaacaaaagggtgcagttgttgttggttacaatgcatttagttctaa 212  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  20750009 gcaaccttataaatcatgaagagattgttaaatgtgttcaaattggttgttgtaaacaaaaaggtacagttgttgttggttacaatgcatttagttctaa 20749910  T
Q  213 agggtcatggagatcttgtggatcaaaaactcaattgcttcctattggacaagggttgt 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20749909 agggtcatggagatcttgtggatcaaaaactcaattgcttcctattggacaagggttgt 20749851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 20762115 - 20761863
Alignment:
Q  13 aaaatcctaggagcggcttctaatcaagttcaattcatgattggaaaaggagcacaagaattattggtgttaaacaaagctgattttgtgttaattgatt 112  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||| ||||      ||||||||||||||||||||||||||||||||||||||||    
T  20762115 aaaatcctaggagcagcttctaatcaagtccaattcatgattggaaaagaagca------ttattggtgttaaacaaagctgattttgtgttaattgatt 20762022  T
Q  113 gcaaccttatgaatcatgaagagattgttaaatgtgttcaaattggttgttataaacaaaagggtgcagttgttgttggttacaatgcatttagttctaa 212  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  20762021 gcaaccatatgaatcatgaagagattgttaaatgtgttcaaattggttgttgtaaacaaaaaggtacagttgttgttggttacaatgcatttagttctaa 20761922  T
Q  213 agggtcatggagatcttgtggatcaaaaactcaattgcttcctattggacaagggttgt 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20761921 agggtcatggagatcttgtggatcaaaaactcaattgcttcctattggacaagggttgt 20761863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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