View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3107_high_54 (Length: 263)

Name: NF3107_high_54
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3107_high_54
NF3107_high_54
[»] chr5 (35 HSPs)
chr5 (1-244)||(9251606-9251849)
chr5 (2-135)||(42852019-42852150)
chr5 (1-138)||(13060556-13060692)
chr5 (1-138)||(12986965-12987104)
chr5 (9-143)||(28625484-28625617)
chr5 (9-143)||(41059738-41059871)
chr5 (39-169)||(41419536-41419665)
chr5 (2-143)||(24030212-24030351)
chr5 (10-143)||(12467269-12467405)
chr5 (7-143)||(17657244-17657379)
chr5 (79-143)||(2878626-2878687)
chr5 (76-161)||(28357214-28357297)
chr5 (67-137)||(38498632-38498699)
chr5 (121-167)||(6144719-6144766)
chr5 (76-156)||(43268571-43268649)
chr5 (1-62)||(10537247-10537309)
chr5 (109-143)||(15167663-15167697)
chr5 (109-143)||(15364104-15364138)
chr5 (109-143)||(29136775-29136809)
chr5 (109-143)||(35083342-35083376)
chr5 (40-143)||(35536881-35536981)
chr5 (76-143)||(1943068-1943132)
chr5 (110-143)||(3977577-3977610)
chr5 (76-143)||(5559868-5559932)
chr5 (109-142)||(7364117-7364150)
chr5 (109-138)||(11163236-11163265)
chr5 (17-138)||(11912056-11912176)
chr5 (53-143)||(40152825-40152913)
chr5 (109-138)||(40697109-40697138)
chr5 (2-135)||(43319000-43319132)
chr5 (2-143)||(1576628-1576767)
chr5 (2-143)||(1608048-1608187)
chr5 (122-169)||(28625459-28625507)
chr5 (39-143)||(40452426-40452529)
chr5 (10-96)||(41534628-41534716)
[»] chr4 (32 HSPs)
chr4 (2-138)||(18424232-18424366)
chr4 (2-143)||(42611818-42611957)
chr4 (9-143)||(28074369-28074501)
chr4 (109-167)||(34633493-34633552)
chr4 (9-143)||(896974-897107)
chr4 (76-167)||(40699433-40699522)
chr4 (76-143)||(18630844-18630908)
chr4 (2-143)||(29877636-29877776)
chr4 (1-143)||(43415237-43415379)
chr4 (9-143)||(7148776-7148909)
chr4 (39-138)||(17222864-17222961)
chr4 (109-143)||(38345771-38345805)
chr4 (9-143)||(48591373-48591506)
chr4 (76-143)||(42617179-42617243)
chr4 (114-169)||(9319156-9319212)
chr4 (76-138)||(48721893-48721952)
chr4 (77-169)||(825756-825846)
chr4 (15-109)||(18258021-18258115)
chr4 (65-138)||(36298394-36298464)
chr4 (9-110)||(52274099-52274202)
chr4 (109-143)||(488333-488367)
chr4 (109-143)||(4331433-4331467)
chr4 (109-143)||(11256610-11256644)
chr4 (109-143)||(34526286-34526320)
chr4 (109-143)||(48667773-48667807)
chr4 (76-143)||(8601274-8601338)
chr4 (114-162)||(10046340-10046389)
chr4 (65-109)||(7206566-7206610)
chr4 (119-170)||(28663406-28663458)
chr4 (39-136)||(36254992-36255087)
chr4 (111-143)||(42153111-42153143)
chr4 (76-143)||(52700492-52700557)
[»] chr3 (21 HSPs)
chr3 (2-143)||(40581025-40581166)
chr3 (9-143)||(40240526-40240659)
chr3 (2-134)||(53217998-53218129)
chr3 (65-138)||(48597820-48597891)
chr3 (9-138)||(43079888-43080016)
chr3 (15-143)||(3845865-3845991)
chr3 (9-110)||(52021250-52021354)
chr3 (1-169)||(10667394-10667562)
chr3 (109-143)||(4974414-4974448)
chr3 (65-141)||(29830590-29830663)
chr3 (109-143)||(38524191-38524225)
chr3 (109-143)||(46573403-46573437)
chr3 (76-143)||(10449050-10449114)
chr3 (15-167)||(10521164-10521316)
chr3 (76-143)||(17752080-17752144)
chr3 (76-143)||(19053400-19053464)
chr3 (76-143)||(25341343-25341407)
chr3 (2-97)||(29270358-29270455)
chr3 (2-109)||(32901128-32901237)
chr3 (109-138)||(52895359-52895388)
chr3 (9-129)||(3870189-3870308)
[»] chr7 (20 HSPs)
chr7 (5-143)||(30181550-30181687)
chr7 (2-143)||(29390500-29390639)
chr7 (24-138)||(14691253-14691366)
chr7 (2-143)||(34922928-34923070)
chr7 (76-138)||(33288029-33288088)
chr7 (9-143)||(29378649-29378782)
chr7 (76-143)||(46744026-46744090)
chr7 (65-143)||(48949782-48949863)
chr7 (1-143)||(22032758-22032899)
chr7 (109-143)||(26331868-26331902)
chr7 (109-143)||(33204937-33204971)
chr7 (109-143)||(35809193-35809227)
chr7 (109-138)||(1401176-1401205)
chr7 (110-143)||(23356440-23356473)
chr7 (65-143)||(16932879-16932954)
chr7 (65-143)||(16938262-16938337)
chr7 (76-143)||(19914018-19914082)
chr7 (119-166)||(33288155-33288203)
chr7 (110-138)||(39279534-39279562)
chr7 (65-143)||(47654363-47654438)
[»] chr1 (23 HSPs)
chr1 (9-143)||(48819303-48819436)
chr1 (9-137)||(3069809-3069936)
chr1 (15-143)||(4068125-4068252)
chr1 (10-143)||(37712073-37712204)
chr1 (17-140)||(15515299-15515421)
chr1 (65-143)||(9572733-9572808)
chr1 (15-143)||(26988158-26988285)
chr1 (16-143)||(6337705-6337831)
chr1 (10-143)||(37329361-37329493)
chr1 (15-143)||(13038957-13039084)
chr1 (1-109)||(35590126-35590236)
chr1 (109-167)||(38781181-38781239)
chr1 (121-165)||(31378809-31378854)
chr1 (15-143)||(16888915-16889041)
chr1 (3-138)||(1565328-1565470)
chr1 (3-138)||(10082248-10082383)
chr1 (2-62)||(18327521-18327582)
chr1 (76-143)||(42591455-42591519)
chr1 (76-143)||(47413445-47413509)
chr1 (119-162)||(6337812-6337856)
chr1 (1-143)||(10365167-10365307)
chr1 (76-143)||(41576344-41576408)
chr1 (65-143)||(46473156-46473231)
[»] chr2 (17 HSPs)
chr2 (9-143)||(4026930-4027062)
chr2 (2-143)||(21788454-21788594)
chr2 (80-143)||(8832534-8832594)
chr2 (2-169)||(9140652-9140818)
chr2 (39-143)||(36501464-36501566)
chr2 (2-143)||(25836662-25836801)
chr2 (2-143)||(33321261-33321401)
chr2 (76-143)||(38216092-38216156)
chr2 (123-170)||(17317157-17317205)
chr2 (108-143)||(37420008-37420043)
chr2 (39-143)||(42064886-42064988)
chr2 (39-143)||(7480848-7480949)
chr2 (65-143)||(17546486-17546561)
chr2 (65-143)||(27880946-27881021)
chr2 (76-138)||(29774818-29774877)
chr2 (69-143)||(30382218-30382289)
chr2 (18-135)||(42839278-42839393)
[»] chr8 (20 HSPs)
chr8 (16-143)||(34286513-34286638)
chr8 (76-143)||(25333650-25333714)
chr8 (24-169)||(35168360-35168508)
chr8 (9-143)||(32975691-32975824)
chr8 (45-143)||(25465796-25465891)
chr8 (91-143)||(25671839-25671888)
chr8 (109-142)||(8752909-8752942)
chr8 (76-143)||(24350468-24350532)
chr8 (9-143)||(28879062-28879192)
chr8 (2-143)||(32131437-32131577)
chr8 (119-167)||(34286619-34286668)
chr8 (45-109)||(25333712-25333776)
chr8 (119-162)||(32213078-32213122)
chr8 (65-143)||(35055484-35055558)
chr8 (65-138)||(32924167-32924236)
chr8 (109-143)||(2669751-2669785)
chr8 (109-138)||(2019594-2019623)
chr8 (109-169)||(9130939-9131000)
chr8 (76-143)||(38338800-38338864)
chr8 (76-143)||(42363266-42363330)
[»] chr6 (12 HSPs)
chr6 (76-159)||(10874057-10874138)
chr6 (89-143)||(12816850-12816902)
chr6 (110-143)||(2255838-2255871)
chr6 (2-143)||(10687304-10687447)
chr6 (109-143)||(3210938-3210972)
chr6 (109-143)||(9201670-9201704)
chr6 (109-143)||(9202348-9202382)
chr6 (109-143)||(10755232-10755266)
chr6 (109-143)||(35071377-35071411)
chr6 (2-143)||(8014785-8014925)
chr6 (65-143)||(29623427-29623501)
chr6 (65-143)||(32165210-32165285)
[»] scaffold0057 (1 HSPs)
scaffold0057 (2-143)||(24338-24477)
[»] scaffold0015 (1 HSPs)
scaffold0015 (109-143)||(48577-48611)


Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 9251849 - 9251606
Alignment:
Q  1 taaaacaacttattcaaataaagaagctttaatgtattttcataagcttatcaagatagtttctaaaaaacaatgtatgaagatatagttttcgttagtg 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9251849 taaaacaacttattcaaataaagaagctttaatatattttcataagcttatcaagatagtttctaaaaaacaatgtatgaagatatagttttcgttactg 9251750  T
Q  101 aaaacttattatgaattaacataaaagcttatttatttacatagcttaaaaataagtcaatcaaaacggatccataacccttttaacttacataacatcc 200  Q
    | |||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||| ||||||||| ||||| |||||||||    
T  9251749 agaacttattatgaattaacataaaagcttatttatttacatagtttgaaaataagttaatcaaaacggatccaaaacccttttgacttatataacatcc 9251650  T
Q  201 attccaataagtcaatccttatttatagcataatattacttggc 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9251649 attccaataagtcaatccttatttatagcataatattacttggc 9251606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 135
Target Start/End: Original strand, 42852019 - 42852150
Alignment:
Q  2 aaaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagt 99  Q
    |||||| |||||||||||||| ||||||| ||||||| ||||||||||| |||||||||||| | |||||||||  ||| || ||| | |||||||||||    
T  42852019 aaaacagcttattcaaataaataagcttttatgtattattcataagcttgtcaagatagtttatgaaaaaacaacttataaa-atacaattttcgttagt 42852117  T
Q  100 gaaaacttattatgaattaacataaaagcttattta 135  Q
    || |||||||   |||||||||||||||||||||||    
T  42852118 gagaacttat---gaattaacataaaagcttattta 42852150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 13060692 - 13060556
Alignment:
Q  1 taaaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttag 98  Q
    ||||| ||||||| |||||||| ||||||| ||||||| ||||||||||| ||||| |||||| | ||||||||   ||||||| ||   ||||||||||    
T  13060692 taaaagaacttatgcaaataaataagcttttatgtattgttcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagttaccattttcgttag 13060593  T
Q  99 tgaaaacttattatgaattaacataaaagcttatttattt 138  Q
    ||| |||||||   ||||||||||||||||||||||||||    
T  13060592 tgagaacttat---gaattaacataaaagcttatttattt 13060556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 12987104 - 12986965
Alignment:
Q  1 taaaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttag 98  Q
    ||||| ||||||| |||||||| ||||||| ||||||| ||||||||||| ||||| |||||| | |||||||| | ||||||| ||   |||| |||||    
T  12987104 taaaagaacttatgcaaataaataagcttttatgtattgttcataagcttgtcaaggtagtttatgaaaaaacagtttatgaagttaccatttttgttag 12987005  T
Q  99 tgaaaacttattatgaattaacataaaagcttatttattt 138  Q
    ||| ||||||| |   ||||||||||||||||||||||||    
T  12987004 tgagaacttatgaattattaacataaaagcttatttattt 12986965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 28625484 - 28625617
Alignment:
Q  9 cttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaact 106  Q
    ||||| |||||||| ||||||| | ||||| ||||||||||| ||||| |||||| | ||||||||   |||||||||| | ||||||||||||| |||     
T  28625484 cttatgcaaataaataagcttttaagtattattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaattttcgttagtgagaacc 28625583  T
Q  107 tattatgaattaacataaaagcttatttatttacata 143  Q
    |||   |||||||||||||||||||||||||| ||||    
T  28625584 tat---gaattaacataaaagcttatttatttgcata 28625617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 41059871 - 41059738
Alignment:
Q  9 cttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaaaa-caatgtatgaagatatagttttcgttagtgaaaact 106  Q
    ||||| |||| ||| ||||||| ||||||| ||||||||||||||||| | |||| | ||||| ||   |||||||||  | ||||||||||||| ||||    
T  41059871 cttatgcaaacaaataagcttttatgtattattcataagcttatcaaggttgtttatgaaaaatcaccttatgaagattcaattttcgttagtgagaact 41059772  T
Q  107 tattatgaattaacataaaagcttatttatttacata 143  Q
    |||   |||||||||||||||||||||||||| ||||    
T  41059771 tat---gaattaacataaaagcttatttatttgcata 41059738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 169
Target Start/End: Original strand, 41419536 - 41419665
Alignment:
Q  39 ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatt 137  Q
    ||||||||||| ||||| |||||| | ||||||||   |||||||||| | ||||||||||||| ||||||| |   |||||||||||| ||||||||||    
T  41419536 ttcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaattttcgttagtgagaacttatca---attaacataaaaacttatttatt 41419632  T
Q  138 tacat-agcttaaaaataagtcaatcaaaacgg 169  Q
    | ||| |||| |||| |||||||||| ||||||    
T  41419633 ttcataagctcaaaagtaagtcaatccaaacgg 41419665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 24030212 - 24030351
Alignment:
Q  2 aaaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagt 99  Q
    |||||| ||||| |||||||| ||||||| ||||||| ||||||||||| ||||  |||||| | |||||||| | |  || |||| | |||||||||||    
T  24030212 aaaacagcttatccaaataaataagcttttatgtattattcataagcttgtcaaagtagtttatgaaaaaacact-tgcgaggatacaattttcgttagt 24030310  T
Q  100 gaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    || |||||||   |||||||||||||||||||||||||| ||||    
T  24030311 gagaacttat---gaattaacataaaagcttatttatttgcata 24030351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 143
Target Start/End: Original strand, 12467269 - 12467405
Alignment:
Q  10 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct--aaaaaacaatgtatgaagatatagttttcgttagtgaaaact 106  Q
    |||| |||||||| ||||||| ||||||| ||||||||||| ||||| |||||| |  ||||||||   |||||||| | | |||| |||||||| ||||    
T  12467269 ttatgcaaataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaaaaaaacagcttatgaagagacaatttttgttagtgagaact 12467368  T
Q  107 tattatgaattaacataaaagcttatttatttacata 143  Q
    ||| |   | |||||||||||||||||||||| ||||    
T  12467369 tatgaattactaacataaaagcttatttatttgcata 12467405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 17657244 - 17657379
Alignment:
Q  7 aacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaa 104  Q
    ||||||| |||||||| ||||||| ||||||| |||||||||||  ||   |||||| | ||||||||   ||||||||||   ||||||||||||| ||    
T  17657244 aacttatgcaaataaataagcttttatgtattattcataagcttgccattgtagtttatgaaaaaacatcttatgaagatacgattttcgttagtgagaa 17657343  T
Q  105 cttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||   ||||||||||||||| |||||||||| ||||    
T  17657344 cttat---gaattaacataaaaggttatttatttgcata 17657379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 2878687 - 2878626
Alignment:
Q  79 gaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    ||||||| | |||| |||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  2878687 gaagatacaatttttgttagtgaaaactt-tta--aattaacataaaagcttatttatttacata 2878626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 161
Target Start/End: Original strand, 28357214 - 28357297
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacat-agcttaaaaataagtcaat 161  Q
    |||||||||| | |||||||||  |||||||||| |   |||||||||||||||||||||||| ||| |||| ||||||||| ||||    
T  28357214 tatgaagatacaattttcgttaacgaaaacttataa---attaacataaaagcttatttatttgcataagctaaaaaataagccaat 28357297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 38498632 - 38498699
Alignment:
Q  67 aaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatt 137  Q
    |||||||| ||| |||||||| |||| ||||||||||||   |||| |||||| |||||||||||||||||    
T  38498632 aaaacaatttataaagatataatttttgttagtgaaaac---ttataaattaaaataaaagcttatttatt 38498699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 6144766 - 6144719
Alignment:
Q  121 ataaaagcttatttatttacat-agcttaaaaataagtcaatcaaaac 167  Q
    |||||||||||||||||||||| |||| ||||||||||||||| ||||    
T  6144766 ataaaagcttatttatttacatgagctcaaaaataagtcaatctaaac 6144719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 43268649 - 43268571
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacat-agcttaaaaataag 156  Q
    |||||||||| | |||| |||||||| ||||||| |   |||||||||||||||||||||||| ||| |||| |||||||||    
T  43268649 tatgaagatacaatttttgttagtgagaacttataa---attaacataaaagcttatttattttcataagctcaaaaataag 43268571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 10537309 - 10537247
Alignment:
Q  1 taaaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagttt 62  Q
    ||||||| ||||| |||||||| ||||||| ||||||| || |||||||| ||||||||||||    
T  10537309 taaaacagcttatgcaaataaataagcttttatgtattatttataagcttgtcaagatagttt 10537247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 15167697 - 15167663
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacata 143  Q
    ||||||||||||||||||||| |||||||||||||    
T  15167697 ttatgaattaacataaaagctaatttatttacata 15167663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 15364104 - 15364138
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||||||||||||||||||||| ||||    
T  15364104 ttatgaattaacataaaagcttatttatttgcata 15364138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 29136809 - 29136775
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||||||||||||||||||||| ||||    
T  29136809 ttatgaattaacataaaagcttatttatttgcata 29136775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 35083342 - 35083376
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||||||||||||||||||||| ||||    
T  35083342 ttatgaattaacataaaagcttatttatttgcata 35083376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 143
Target Start/End: Original strand, 35536881 - 35536981
Alignment:
Q  40 tcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttattt 138  Q
    |||||||||| |||||||||||| | ||||||||   |||||||||| | ||||||||| ||| |||   ||||||| ||| ||||||||||||||||||    
T  35536881 tcataagcttgtcaagatagtttatgaaaaaacagcttatgaagatacaattttcgttactgagaac---ttatgaa-taatataaaagcttatttattt 35536976  T
Q  139 acata 143  Q
     ||||    
T  35536977 gcata 35536981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 1943068 - 1943132
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||| | ||||| ||||||| |||||||   |||||| ||||||||||||||||||| ||||    
T  1943068 tatgaagatacaattttcattagtgagaacttat---gaattagcataaaagcttatttatttgcata 1943132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 143
Target Start/End: Original strand, 3977577 - 3977610
Alignment:
Q  110 tatgaattaacataaaagcttatttatttacata 143  Q
    ||||||||||||||||||||||||||||| ||||    
T  3977577 tatgaattaacataaaagcttatttatttgcata 3977610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 5559932 - 5559868
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||| | ||||||||||||| || ||||   ||||| |||||||||||||||||||| ||||    
T  5559932 tatgaagatacaattttcgttagtgagaatttat---gaatttacataaaagcttatttatttgcata 5559868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 7364150 - 7364117
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacat 142  Q
    ||||||||||||||||||||||| ||||||||||    
T  7364150 ttatgaattaacataaaagcttaattatttacat 7364117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 138
Target Start/End: Complemental strand, 11163265 - 11163236
Alignment:
Q  109 ttatgaattaacataaaagcttatttattt 138  Q
    ||||||||||||||||||||||||||||||    
T  11163265 ttatgaattaacataaaagcttatttattt 11163236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 11912176 - 11912056
Alignment:
Q  17 aataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatga 114  Q
    |||||| ||||||| ||||||| ||||||| ||| ||||  |||||| | |||||| |   |||||||||| | |||| |||||||| |||||||   ||    
T  11912176 aataaataagcttttatgtattgttcataatcttgtcaaagtagtttgtgaaaaaagagcttatgaagatacaatttttgttagtgagaacttat---ga 11912080  T
Q  115 attaacataaaagcttatttattt 138  Q
    |||||||| |||||||||||||||    
T  11912079 attaacatgaaagcttatttattt 11912056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 40152913 - 40152825
Alignment:
Q  53 aagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||| | |||||||||| |||||||||| | ||||||||  ||| |||||||   ||||||| ||||||| |||||||||| ||||    
T  40152913 aagatagtttatgaaaaaacaatttatgaagataaaattttcgttcttgagaacttat---gaattaatataaaagattatttatttgcata 40152825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 138
Target Start/End: Original strand, 40697109 - 40697138
Alignment:
Q  109 ttatgaattaacataaaagcttatttattt 138  Q
    ||||||||||||||||||||||||||||||    
T  40697109 ttatgaattaacataaaagcttatttattt 40697138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 135
Target Start/End: Original strand, 43319000 - 43319132
Alignment:
Q  2 aaaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagt 99  Q
    |||||||||||| |||||||| | |  || ||||||| || |||||||| | ||  |||||| | |||||||| | ||||||| |||| |||||||||||    
T  43319000 aaaacaacttatgcaaataaatatgtctttatgtattatttataagcttgttaatgtagtttatgaaaaaacagtttatgaaggtataattttcgttagt 43319099  T
Q  100 gaaaacttattatgaattaacataaaagcttattta 135  Q
    || |||   ||||||||||| |||||| ||||||||    
T  43319100 gagaac---ttatgaattaagataaaaacttattta 43319132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 1576628 - 1576767
Alignment:
Q  2 aaaacaacttattcaaataaagaagctttaatgtattttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtg 100  Q
    |||||| ||||  |||||||| || |||| |||||||||||||||||| ||||  |||||| |  ||||||||  | |||||||| | |||| |||||||    
T  1576628 aaaacagcttaagcaaataaataaacttttatgtattttcataagcttgtcaatgtagtttatggaaaaacaacttgtgaagatacaatttttgttagtg 1576727  T
Q  101 aaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    | |||   ||| ||||||||||||||   ||||||||| ||||    
T  1576728 agaac---ttaagaattaacataaaactgtatttatttgcata 1576767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 1608187 - 1608048
Alignment:
Q  2 aaaacaacttattcaaataaagaagctttaatgtattttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtg 100  Q
    |||||| ||||  |||||||| || |||| |||||||||||||||||| ||||  |||||| |  ||||||||  | |||||||| | |||| |||||||    
T  1608187 aaaacagcttaagcaaataaataaacttttatgtattttcataagcttgtcaatgtagtttatggaaaaacaacttgtgaagatacaatttttgttagtg 1608088  T
Q  101 aaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    | |||   ||| ||||||||||||||   ||||||||| ||||    
T  1608087 agaac---ttaagaattaacataaaactgtatttatttgcata 1608048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 28625507 - 28625459
Alignment:
Q  122 taaaagcttatttatttacata-gcttaaaaataagtcaatcaaaacgg 169  Q
    ||||||||||||||||| |||| ||| ||||||||||||||| ||||||    
T  28625507 taaaagcttatttatttgcataagctaaaaaataagtcaatccaaacgg 28625459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 143
Target Start/End: Complemental strand, 40452529 - 40452426
Alignment:
Q  39 ttcataagcttatcaagatagtttctaaa-aaacaatgtatgaagatatagtttt-cgttagtgaaaacttattatgaattaacataaaagcttatttat 136  Q
    ||||||||||| ||||| |||||| | || |||||   |||||||||||| |||| ||||||||| |||||||   |||| ||||||| |||||||||||    
T  40452529 ttcataagcttgtcaaggtagtttatgaagaaacagcttatgaagatataatttttcgttagtgagaacttat---gaataaacataatagcttatttat 40452433  T
Q  137 ttacata 143  Q
    || ||||    
T  40452432 ttgcata 40452426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 41534628 - 41534716
Alignment:
Q  10 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagttt-ctaaaaaacaatgtatgaagatatagttttcgtt 96  Q
    |||| |||||||| ||||||| ||||||| ||||||||||| ||||| |||||| | ||||||||   |||||||||| | ||||||||    
T  41534628 ttatgcaaataaataagcttttatgtattattcataagcttgtcaaggtagtttacgaaaaaacagcttatgaagatacaattttcgtt 41534716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 18424366 - 18424232
Alignment:
Q  2 aaaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaaaacaatgtatgaagatatagttttcgttagtg 100  Q
    ||||||| |||| |||||||| ||||||| ||||||| ||||||| ||| | ||| |||||| | ||||||||| |||||||||| | |||| |||| ||    
T  18424366 aaaacaatttatacaaataaataagcttttatgtattattcataaacttgtgaaggtagtttatgaaaaacaatttatgaagatacaatttttgttattg 18424267  T
Q  101 aaaacttattatgaattaacataaaagcttatttattt 138  Q
    |||||||||   ||||||||||||||||||||||||||    
T  18424266 aaaacttat---gaattaacataaaagcttatttattt 18424232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 42611957 - 42611818
Alignment:
Q  2 aaaacaacttattcaaataaagaagcttta-atgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttag 98  Q
    |||||||||||| |||||||| |||||||| ||||||| ||||||||||| || || |||||| | |||||||||  |||||||||| ||||||||| ||    
T  42611957 aaaacaacttatgcaaataaataagctttatatgtattattcataagcttgtcgag-tagtttatgaaaaaacaacttatgaagatacagttttcgt-ag 42611860  T
Q  99 tgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    ||| |||||||   |||||||||||||||||||||||||| ||||    
T  42611859 tgacaacttat---gaattaacataaaagcttatttatttgcata 42611818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 28074369 - 28074501
Alignment:
Q  9 cttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaaaacaatgtatgaagatatagttttcgttagtgaaaactt 107  Q
    ||||| |||||||| ||||||| ||||||| ||||||||||| ||||| |||||| | ||||| |   |||||||||| | |||||||||| ||||||      
T  28074369 cttatgcaaataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaaaaaaagcttatgaagatacaattttcgttagcgaaaac-- 28074466  T
Q  108 attatgaattaacataaaagcttatttatttacata 143  Q
     || |||| |||||||||| ||||||||||| ||||    
T  28074467 -ttgtgaaataacataaaatcttatttatttgcata 28074501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 34633493 - 34633552
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacat-agcttaaaaataagtcaatcaaaac 167  Q
    |||||||||||||||||||||||||||||| | | |||||||||||||||||||| ||||    
T  34633493 ttatgaattaacataaaagcttatttatttgcgtaagcttaaaaataagtcaatccaaac 34633552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 896974 - 897107
Alignment:
Q  9 cttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaact 106  Q
    ||||| |||||||| || |||| ||||||| ||||||||||| ||||  |||||| | |||||||||| || | |||||   ||||||||||||||||||    
T  896974 cttatgcaaataaataaacttttatgtattattcataagcttgtcaatgtagtttatgaaaaaacaatttacgtagatacgattttcgttagtgaaaact 897073  T
Q  107 tattatgaattaacataaaagcttatttatttacata 143  Q
    ||| |   ||||| |||||||||||||||||| ||||    
T  897074 tataa---attaatataaaagcttatttatttgcata 897107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 167
Target Start/End: Original strand, 40699433 - 40699522
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacat-agcttaaaaataagtcaatcaaaac 167  Q
    |||||||||| ||||||||| ||||| |||||||   |||||||||||||| ||||||| ||| ||| |||| |||||||||| |||||||||    
T  40699433 tatgaagatacagttttcgtaagtgagaacttat---gaattaacataaaatcttatttgtttgcataagctcaaaaataagttaatcaaaac 40699522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 18630908 - 18630844
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||| ||||||||||||||| |||||||   ||||||| |||||||||||||||||| ||||    
T  18630908 tatgaagataaagttttcgttagtgagaacttat---gaattaatataaaagcttatttatttgcata 18630844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 29877636 - 29877776
Alignment:
Q  2 aaaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaaaa-caatgtatgaagatatagttttcgttagt 99  Q
    ||||||| |||| |||||||| ||||||| ||||||| |||||||||||   ||| |||||| | ||||| ||   |||||||||| | |||| ||||||    
T  29877636 aaaacaatttatgcaaataaataagcttttatgtattattcataagcttgctaaggtagtttatgaaaaagcagcttatgaagatacaatttttgttagt 29877735  T
Q  100 gaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    || |||||||   |||||||||||||||||||| ||||| ||||    
T  29877736 gagaacttat---gaattaacataaaagcttatatatttgcata 29877776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 43415379 - 43415237
Alignment:
Q  1 taaaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagttt-ctaaaaaacaatgtatgaagatatagttttcgttag 98  Q
    ||||||||||| | |||||||| ||| ||| ||||||| |||||||| || | ||  |||||| | |||||||||| ||| |||||||| | || |||||    
T  43415379 taaaacaacttctgcaaataaataagtttttatgtattattcataaggttgttaatgtagtttacgaaaaaacaatttatcaagatataatatttgttag 43415280  T
Q  99 tgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    ||||||  |  |||||||||||||||||  |||||||||||||||    
T  43415279 tgaaaaact--tatgaattaacataaaaatttatttatttacata 43415237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 7148776 - 7148909
Alignment:
Q  9 cttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaact 106  Q
    ||||| |||||||| ||||||| ||||||| ||||||||||| ||||| |||||| | ||||||||   ||| || ||| | ||||| ||||| | |||     
T  7148776 cttatgcaaataaataagcttttatgtattattcataagcttgtcaaggtagtttttgaaaaaacagcttataaaaatacaattttctttagtcagaac- 7148874  T
Q  107 tattatgaattaacataaaagcttatttatttacata 143  Q
      |||||||||| ||||||||||||||||||| ||||    
T  7148875 --ttatgaattagcataaaagcttatttatttgcata 7148909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 138
Target Start/End: Original strand, 17222864 - 17222961
Alignment:
Q  39 ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatt 137  Q
    ||||||||||| ||||| |||||| | ||||||||   |||||||||| | ||||||||||| | |||||||   |||||||||||||| ||||||||||    
T  17222864 ttcataagcttgtcaaggtagtttatgaaaaaacagattatgaagatacaattttcgttagttagaacttat---gaattaacataaaaacttatttatt 17222960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 38345805 - 38345771
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||||||||||||||||||||||||||    
T  38345805 ttatgaattaacataaaagcttatttatttacata 38345771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 48591506 - 48591373
Alignment:
Q  9 cttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaact 106  Q
    ||||| |||||||| ||| ||| || |||| |||||| |||| ||||| |||||| | ||||||||   |||||||||| | ||||||||| ||| ||||    
T  48591506 cttatgcaaataaataagtttttatatattattcatacgcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaattttcgttaatgagaact 48591407  T
Q  107 tattatgaattaacataaaagcttatttatttacata 143  Q
    |||   |||||||| ||||||||||||||||| ||||    
T  48591406 tat---gaattaacgtaaaagcttatttatttgcata 48591373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 42617243 - 42617179
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||  |||||||||||||||||   |||| |||||| |||||| ||||||||||||||||    
T  42617243 tatgaagatatgattttcgttagtgaaaac---ttataaattaaaataaaaacttatttatttacata 42617179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 9319156 - 9319212
Alignment:
Q  114 aattaacataaaagcttatttatttacat-agcttaaaaataagtcaatcaaaacgg 169  Q
    ||||||||||||||||||||||||||||| |||| ||||||||| ||| | ||||||    
T  9319156 aattaacataaaagcttatttatttacataagctaaaaaataagccaaaccaaacgg 9319212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 48721893 - 48721952
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttattt 138  Q
    |||||||||||| |||| |||||||| |||||||   ||||||| ||||||||||||||||||    
T  48721893 tatgaagatataatttttgttagtgagaacttat---gaattaatataaaagcttatttattt 48721952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 169
Target Start/End: Original strand, 825756 - 825846
Alignment:
Q  77 atgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacat-agcttaaaaataagtcaatcaaaacgg 169  Q
    ||||||||| | |||| |||||||||| |||||   |||||||||||||| ||||||||||| ||| |||| |||||| || ||||| ||||||    
T  825756 atgaagatacattttttgttagtgaaagcttat---gaattaacataaaatcttatttatttgcataagctaaaaaattagccaatccaaacgg 825846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 18258021 - 18258115
Alignment:
Q  15 caaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaaaacaatgtatgaagatatagttttcgttagtgaaaacttat 109  Q
    |||||||| ||| |||| |||||| ||||||| |||||||||||  ||| | ||||||||  ||||||| || | |||||||||||||||||||||    
T  18258021 caaataaataagtttta-tgtattattcataaacttatcaagatgttttttgaaaaacaacttatgaagttacaattttcgttagtgaaaacttat 18258115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 36298394 - 36298464
Alignment:
Q  65 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttattt 138  Q
    |||||||||| |||||||||| | |||| |||| |||||||   ||||||||||| ||||||| ||||||||||    
T  36298394 aaaaaacaatttatgaagataaattttttgttaatgaaaac---ttatgaattaatataaaagtttatttattt 36298464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 52274202 - 52274099
Alignment:
Q  9 cttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagttt-ctaaaaaacaatgtatgaagatatagttttcgttagtgaaaact 106  Q
    ||||| |||||||| || |||| ||||||| || |||||||||||||| |||||| | ||||||||   |||||||||| | ||||||| ||||| ||||    
T  52274202 cttatgcaaataaataaacttttatgtattattgataagcttatcaaggtagtttacgaaaaaacagcttatgaagatacaattttcgtcagtgagaact 52274103  T
Q  107 tatt 110  Q
    ||||    
T  52274102 tatt 52274099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 488367 - 488333
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||||||||||||||||||||| ||||    
T  488367 ttatgaattaacataaaagcttatttatttccata 488333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 4331433 - 4331467
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||||||||| ||||||||||||||||    
T  4331433 ttatgaattaacataaaaacttatttatttacata 4331467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 11256644 - 11256610
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||||||||||||||||||||| ||||    
T  11256644 ttatgaattaacataaaagcttatttatttgcata 11256610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 34526320 - 34526286
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||||||||||||||||||||| ||||    
T  34526320 ttatgaattaacataaaagcttatttatttgcata 34526286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 48667773 - 48667807
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||||||||||||||||||||| ||||    
T  48667773 ttatgaattaacataaaagcttatttatttgcata 48667807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 8601274 - 8601338
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||| | |||| |||||||||||   ||||| ||||||||| ||||||||||||||| ||||    
T  8601274 tatgaagatacaatttttgttagtgaaaa---attataaattaacattaaagcttatttatttgcata 8601338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 10046340 - 10046389
Alignment:
Q  114 aattaacataaaagcttatttatttacat-agcttaaaaataagtcaatc 162  Q
    |||||||||||||||||| |||||||||| |||| |||||||||| ||||    
T  10046340 aattaacataaaagcttaattatttacataagctcaaaaataagttaatc 10046389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 7206610 - 7206566
Alignment:
Q  65 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttat 109  Q
    |||||||||  |||||||||| ||||||||||||||| |||||||    
T  7206610 aaaaaacaacttatgaagataaagttttcgttagtgagaacttat 7206566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 28663458 - 28663406
Alignment:
Q  119 acataaaagcttatttatttacata-gcttaaaaataagtcaatcaaaacgga 170  Q
    ||||||||||| |||||||| |||| ||| ||||||||||||||| |||||||    
T  28663458 acataaaagctcatttatttgcataagctcaaaaataagtcaatccaaacgga 28663406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 36255087 - 36254992
Alignment:
Q  39 ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttat 136  Q
    ||||||||||| ||||  |||||| | ||||||||   |||||||||| | ||||  ||||||| |||||||   ||||||||||||||||||||||||    
T  36255087 ttcataagcttgtcaacgtagtttgtgaaaaaacagcttatgaagatacaattttaattagtgagaacttat---gaattaacataaaagcttatttat 36254992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 42153143 - 42153111
Alignment:
Q  111 atgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||||||||||||||||||| ||||    
T  42153143 atgaattaacataaaagcttatttatttgcata 42153111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 52700557 - 52700492
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    ||||||||||   ||||||||||| | ||||||| |  |||||||||||||| |||||||||||||||    
T  52700557 tatgaagatacgattttcgttagtaagaacttataa--aattaacataaaagattatttatttacata 52700492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 40581166 - 40581025
Alignment:
Q  2 aaaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct--aaaaaacaatgtatgaagatatagttttcgttag 98  Q
    |||||||||||| |||||||| ||||||| ||||||| || |||||||| ||||| |||||| |  ||||||||  ||||||||| | | ||||||||||    
T  40581166 aaaacaacttatgcaaataaataagcttttatgtattattaataagcttgtcaaggtagtttatgaaaaaaacagcgtatgaagaaacaattttcgttag 40581067  T
Q  99 tgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    ||| |||||||   |||||||||||||| ||||||||||| ||||    
T  40581066 tgagaacttat---gaattaacataaaatcttatttatttgcata 40581025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 40240659 - 40240526
Alignment:
Q  9 cttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaact 106  Q
    ||||| |||||||||||||||| ||||||| ||||||||| | || || |||||| | |||||||||  |||||||||| | ||||||||||||| | ||    
T  40240659 cttatgcaaataaagaagcttttatgtattattcataagcgtgtctaggtagtttatgaaaaaacaacttatgaagatacaattttcgttagtgagagct 40240560  T
Q  107 tattatgaattaacataaaagcttatttatttacata 143  Q
    |||   ||||||| |||||||||||||||||| ||||    
T  40240559 tat---gaattaagataaaagcttatttatttgcata 40240526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 134
Target Start/End: Complemental strand, 53218129 - 53217998
Alignment:
Q  2 aaaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagt 99  Q
    |||||||||||| | |||||| ||| ||| ||||||| ||||||||||| ||||| |||||| | |||||||||  | |||||||| | |||||||||||    
T  53218129 aaaacaacttatgcgaataaataagattttatgtattattcataagcttgtcaaggtagtttatgaaaaaacaacttttgaagatacaattttcgttagt 53218030  T
Q  100 gaaaacttattatgaattaacataaaagcttattt 134  Q
    || |||   |||| |||||| ||||||||||||||    
T  53218029 gagaac---ttataaattaaaataaaagcttattt 53217998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 48597891 - 48597820
Alignment:
Q  65 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttattt 138  Q
    |||||||||  |||||||||| | ||||||| ||||| ||||||  ||||||||||||||||||||||||||||    
T  48597891 aaaaaacaacttatgaagatacaattttcgtcagtgagaactta--atgaattaacataaaagcttatttattt 48597820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 43080016 - 43079888
Alignment:
Q  9 cttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaact 106  Q
    ||||| |||||||| ||||||| |||| || ||||||||||| ||||| |||||| | ||||||||   |||||||||| | ||||||| | ||| ||||    
T  43080016 cttatgcaaataaataagcttttatgtgttattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaattttcgtgattgagaact 43079917  T
Q  107 tattatgaattaacataaaagcttatttattt 138  Q
    |||   |||||||| |||||||||||||||||    
T  43079916 tat---gaattaacttaaaagcttatttattt 43079888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 3845865 - 3845991
Alignment:
Q  15 caaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaa-aaaacaatgtatgaagatatagttttcgttagtgaaaacttattat 112  Q
    |||||||| ||||||| || |||| ||||||||||| ||||| |||||| | | ||||||   |||||||||| | |||||| |||||||||| |||       
T  3845865 caaataaataagcttttatatattattcataagcttgtcaagctagtttatgacaaaacagcatatgaagataca-ttttcgctagtgaaaacatat--- 3845960  T
Q  113 gaattaacataaaagcttatttatttacata 143  Q
    |||||||||||||||||||||||||| ||||    
T  3845961 gaattaacataaaagcttatttatttgcata 3845991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 52021250 - 52021354
Alignment:
Q  9 cttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct--aaaaaacaatgtatgaagatatagttttcgttagtgaaaac 105  Q
    ||||| |||||||| | ||||| ||||||| |||||||| || ||||| |||||| |  ||||||||   |||||||||||| ||||||||||||| |||    
T  52021250 cttatgcaaataaatatgcttttatgtattattcataagattgtcaaggtagtttatgaaaaaaacagcttatgaagatataattttcgttagtgagaac 52021349  T
Q  106 ttatt 110  Q
    |||||    
T  52021350 ttatt 52021354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 10667394 - 10667562
Alignment:
Q  1 taaaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaa-aacaatgtatgaagatatagttttcgttag 98  Q
    ||||| ||||||  |||||||| ||||||  ||||||| ||||||||||| ||||  |||||| | ||| |||| | ||||||||||||  ||| |||||    
T  10667394 taaaataacttacgcaaataaataagcttatatgtattattcataagcttgtcaatgtagtttatgaaacaacattttatgaagatataacttttgttag 10667493  T
Q  99 tgaaaacttattatgaattaacataaaagcttatttatttacat-agcttaaaaataagtcaatcaaaacgg 169  Q
    |||||||||| |||  |||| | ||||||||| ||||||| ||| | |||| |||||| |||||| ||||||    
T  10667494 tgaaaactta-tat--attatcgtaaaagcttgtttatttgcataaacttataaataaatcaatccaaacgg 10667562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 4974414 - 4974448
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||||||||||||||||||||| ||||    
T  4974414 ttatgaattaacataaaagcttatttatttgcata 4974448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 29830663 - 29830590
Alignment:
Q  65 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttaca 141  Q
    |||||||| | |||||||||| | ||||||||||||| |||   |||| |||||| |||||| ||||||||||||||    
T  29830663 aaaaaacagtttatgaagatacaattttcgttagtgagaac---ttataaattaaaataaaaacttatttatttaca 29830590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 38524191 - 38524225
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||||||||||||||||||||| ||||    
T  38524191 ttatgaattaacataaaagcttatttatttgcata 38524225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 46573437 - 46573403
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||||||||||||||||||||| ||||    
T  46573437 ttatgaattaacataaaagcttatttatttgcata 46573403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 10449050 - 10449114
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    ||||||| |||| ||||||||||||| |||||||   ||||||| |||||| ||||||||||| ||||    
T  10449050 tatgaaggtataattttcgttagtgagaacttat---gaattaagataaaaacttatttatttgcata 10449114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 167
Target Start/End: Original strand, 10521164 - 10521316
Alignment:
Q  15 caaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaa-aacaatgtatgaagatatagttttcgttagtgaaaacttattat 112  Q
    |||||||| ||||||  ||||||| ||||||||||| ||||  |||||| | ||| |||| | ||||||||||||  ||| ||||||||||||   ||||    
T  10521164 caaataaataagcttatatgtattattcataagcttgtcaatgtagtttatgaaacaacattttatgaagatataacttttgttagtgaaaac---ttat 10521260  T
Q  113 gaattaacataaaagcttatttatttacat-agcttaaaaataagtcaatcaaaac 167  Q
     ||||| | ||||||||| ||||||| ||| | |||| |||||| |||||| ||||    
T  10521261 aaattatcgtaaaagcttgtttatttgcataaacttataaataaatcaatccaaac 10521316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 17752144 - 17752080
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||| | ||||||||||| | ||||||| |   ||||||||||||| |||||||||||||||    
T  17752144 tatgaagatacaattttcgttagtaagaacttataa---attaacataaaagtttatttatttacata 17752080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 19053464 - 19053400
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||| | ||||||||||| | ||||||| |   ||||||||||||| |||||||||||||||    
T  19053464 tatgaagatacaattttcgttagtaagaacttataa---attaacataaaagtttatttatttacata 19053400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 25341343 - 25341407
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||| | |||||||||| |||||||| |   ||||||| |||||| ||||||||||||||||    
T  25341343 tatgaagataaaattttcgttagggaaaacttgt---gaattaatataaaaacttatttatttacata 25341407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 29270358 - 29270455
Alignment:
Q  2 aaaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgtta 97  Q
    ||||||||||||   |||||| ||||||| ||||||| ||||||||||| |||||||| ||| | ||||||||   |||||||||| | |||||||||    
T  29270358 aaaacaacttataggaataaataagcttttatgtattattcataagcttttcaagataatttatgaaaaaacagcttatgaagatacaattttcgtta 29270455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 32901237 - 32901128
Alignment:
Q  2 aaaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaa-aaaacaatgtatgaagatatagttttcgttagt 99  Q
    ||||||||||||  ||||||| ||||||| || |||| |||| ||  || | |||||||||| ||| |||||||  |||||||||| | |||||||||||    
T  32901237 aaaacaacttatgtaaataaataagcttttatttattattcacaaatttgttaagatagtttataagaaaacaacttatgaagataaaattttcgttagt 32901138  T
Q  100 gaaaacttat 109  Q
    || |||||||    
T  32901137 gagaacttat 32901128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 138
Target Start/End: Complemental strand, 52895388 - 52895359
Alignment:
Q  109 ttatgaattaacataaaagcttatttattt 138  Q
    ||||||||||||||||||||||||||||||    
T  52895388 ttatgaattaacataaaagcttatttattt 52895359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 3870308 - 3870189
Alignment:
Q  9 cttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaact 106  Q
    ||||| |||| ||| ||||||| |||| || ||||||||||| ||||| |||||| | |||||||||  ||||| |||| | ||||| ||| ||| ||||    
T  3870308 cttatgcaaaaaaataagcttttatgttttgttcataagcttgtcaaggtagtttatgaaaaaacaacatatgatgatacacttttcattaatgagaact 3870209  T
Q  107 tattatgaattaacataaaagct 129  Q
    |||   |||||||||||||||||    
T  3870208 tat---gaattaacataaaagct 3870189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 30181550 - 30181687
Alignment:
Q  5 acaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaa 102  Q
    ||||||||  |||||||||||||||| ||||||| ||||||||||| ||||| |||||| | ||||||||   ||||||||||  |||||| ||||||      
T  30181550 acaacttaggcaaataaagaagcttttatgtattattcataagcttgtcaaggtagtttatcaaaaaacagcttatgaagatactgttttcattagtggg 30181649  T
Q  103 aacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||   |||||||||||||||||||||||||| ||||    
T  30181650 aacttat---gaattaacataaaagcttatttatttgcata 30181687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 29390639 - 29390500
Alignment:
Q  2 aaaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaaaacaatgtatgaagatatagttttcgttagtg 100  Q
    |||||||||||| |||||||| || |||| ||||||| ||||||||||| | ||| |||||| | ||||||||  |||||||||| | ||||||||||      
T  29390639 aaaacaacttatgcaaataaataatctttgatgtattattcataagcttgtaaaggtagtttatgaaaaacaacttatgaagatacaattttcgttagct 29390540  T
Q  101 aaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    | ||    |||||||||||||||||||||||||||||| ||||    
T  29390539 agaa---tttatgaattaacataaaagcttatttatttgcata 29390500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 14691366 - 14691253
Alignment:
Q  24 aagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaaca 121  Q
    ||||||| ||||||| ||||||||||| ||||  || ||| | |||||||||| |||||||||||| ||||||||||||| |||   |||||||||||||    
T  14691366 aagcttttatgtattattcataagcttgtcaatgtaatttatgaaaaaacaatttatgaagatataattttcgttagtgagaac---ttatgaattaaca 14691270  T
Q  122 taaaagcttatttattt 138  Q
    |||||| ||||||||||    
T  14691269 taaaaggttatttattt 14691253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 34922928 - 34923070
Alignment:
Q  2 aaaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct---aaaaaacaatgtatgaagatatagttttcgtta 97  Q
    |||||||||||| |||||||| ||||||| ||||||| |||||||| || ||||| |||||| |   ||||||||   | |||||||| | |||||||||    
T  34922928 aaaacaacttatgcaaataaataagcttttatgtattattcataagtttgtcaaggtagtttataaaaaaaaacagcttgtgaagatacacttttcgtta 34923027  T
Q  98 gtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||| |||   ||||||| |||||||||||||||||||||| ||||    
T  34923028 gtgagaac---ttatgaactaacataaaagcttatttatttgcata 34923070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 33288088 - 33288029
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttattt 138  Q
    |||||||||| |||||||||||||||||||   |||||||||||||||||| |||||||||||    
T  33288088 tatgaagatacagttttcgttagtgaaaac---ttatgaattaacataaaaacttatttattt 33288029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 29378649 - 29378782
Alignment:
Q  9 cttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaact 106  Q
    ||||| |||||||| ||||||| ||||||| || || || || ||||| |||||| | ||||||||   |||||||||| | ||||||||||| | ||||    
T  29378649 cttatgcaaataaataagcttttatgtattatttatgagtttgtcaaggtagtttatgaaaaaacagcttatgaagatacaattttcgttagtaagaact 29378748  T
Q  107 tattatgaattaacataaaagcttatttatttacata 143  Q
    |||   |||||||| ||||||||||||||||| ||||    
T  29378749 tat---gaattaacgtaaaagcttatttatttgcata 29378782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 46744026 - 46744090
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||| | ||||||||||||| ||||||    |||||||||||||||||||||||||| ||||    
T  46744026 tatgaagatacaattttcgttagtgagaacttac---gaattaacataaaagcttatttattttcata 46744090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 48949782 - 48949863
Alignment:
Q  65 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttat---tatgaattaacataaaagcttatttatttacata 143  Q
    |||||||| | |||||||||||| | ||||||||||||  |||||   ||| |||||| |||||| ||||||||||||||||    
T  48949782 aaaaaacagtttatgaagatataatattcgttagtgaaggcttataaatataaattaaaataaaaacttatttatttacata 48949863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 22032758 - 22032899
Alignment:
Q  1 taaaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttag 98  Q
    ||||||||||||| |||||||| | | ||| ||||||| || |||||| | | ||  |||||| | |||||||||| ||||||| || | ||||||||||    
T  22032758 taaaacaacttatgcaaataaatatgtttttatgtattatttataagcatgttaatgtagtttatgaaaaaacaatttatgaaggtacaattttcgttag 22032857  T
Q  99 tgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    ||| |||   |||| |||||| |||||| ||||||||||| ||||    
T  22032858 tgagaac---ttataaattaagataaaaacttatttatttgcata 22032899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 26331868 - 26331902
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||||||||||||||||||||| ||||    
T  26331868 ttatgaattaacataaaagcttatttatttgcata 26331902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 33204937 - 33204971
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||||||||||||||||||||| ||||    
T  33204937 ttatgaattaacataaaagcttatttatttgcata 33204971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 35809193 - 35809227
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacata 143  Q
    ||||||||||||||||||||||| |||||||||||    
T  35809193 ttatgaattaacataaaagcttaattatttacata 35809227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 138
Target Start/End: Original strand, 1401176 - 1401205
Alignment:
Q  109 ttatgaattaacataaaagcttatttattt 138  Q
    ||||||||||||||||||||||||||||||    
T  1401176 ttatgaattaacataaaagcttatttattt 1401205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 143
Target Start/End: Complemental strand, 23356473 - 23356440
Alignment:
Q  110 tatgaattaacataaaagcttatttatttacata 143  Q
    ||||||||||||||||||||||||||| ||||||    
T  23356473 tatgaattaacataaaagcttatttatatacata 23356440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 16932954 - 16932879
Alignment:
Q  65 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    ||||||| || |||||||||| | ||||||||||| ||| ||||| |   ||||| |||||||||||||||| ||||||    
T  16932954 aaaaaaccatttatgaagatacaattttcgttagtaaaagcttataa---attaaaataaaagcttatttatatacata 16932879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 16938337 - 16938262
Alignment:
Q  65 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    ||||||| || |||||||||| | ||||||||||| ||| ||||| |   ||||| |||||||||||||||| ||||||    
T  16938337 aaaaaaccatttatgaagatacaattttcgttagtaaaagcttataa---attaaaataaaagcttatttatatacata 16938262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 19914018 - 19914082
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||| ||| ||||||||||| ||| ||||| ||  ||||| |||||||||||||||||||||||    
T  19914018 tatgaagagataattttcgttagtaaaagcttat-at--attaaaataaaagcttatttatttacata 19914082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 33288155 - 33288203
Alignment:
Q  119 acataaaagcttatttatttacat-agcttaaaaataagtcaatcaaaa 166  Q
    |||||||||||||||||||| ||| |||| ||||||| |||||||||||    
T  33288155 acataaaagcttatttatttgcataagctcaaaaatatgtcaatcaaaa 33288203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 138
Target Start/End: Original strand, 39279534 - 39279562
Alignment:
Q  110 tatgaattaacataaaagcttatttattt 138  Q
    |||||||||||||||||||||||||||||    
T  39279534 tatgaattaacataaaagcttatttattt 39279562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 47654438 - 47654363
Alignment:
Q  65 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||| | ||||||| || | ||||||||||||| |||||||   ||||||| |||||| ||||||||||| ||||    
T  47654438 aaaaaacagtttatgaaggtacaattttcgttagtgagaacttat---gaattaagataaaaacttatttatttgcata 47654363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 48819303 - 48819436
Alignment:
Q  9 cttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaact 106  Q
    ||||| ||||||||  |||||||||||||| ||||||||||| ||||| |||||| | ||||||||   |||||||||| | |||| |||||||| ||||    
T  48819303 cttatgcaaataaatgagctttaatgtattattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacattttttgttagtgagaact 48819402  T
Q  107 tattatgaattaacataaaagcttatttatttacata 143  Q
    |||   |||||||||||||||||||||||||| ||||    
T  48819403 tat---gaattaacataaaagcttatttatttgcata 48819436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 3069936 - 3069809
Alignment:
Q  9 cttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaact 106  Q
    ||||| |||||||  ||||||||||||||| ||||||||||| ||||| |||||| | ||||||||   |||||||||| | |||||  |||||| ||||    
T  3069936 cttatacaaataagtaagctttaatgtattattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaattttcactagtgagaact 3069837  T
Q  107 tattatgaattaacataaaagcttatttatt 137  Q
    |||   |||||||||||||||||||||||||    
T  3069836 tat---gaattaacataaaagcttatttatt 3069809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 4068125 - 4068252
Alignment:
Q  15 caaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattat 112  Q
    |||||||| ||||||| ||||||| ||||||||||| ||||| |||||| | |||||||||  ||||||||||   ||||||||||||| |||||||       
T  4068125 caaataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaaaaaacaacttatgaagatactattttcgttagtgagaacttat--- 4068221  T
Q  113 gaattaacataaaagcttatttatttacata 143  Q
    ||||||| ||||||| |||||||||| ||||    
T  4068222 gaattaatataaaagtttatttatttgcata 4068252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 143
Target Start/End: Original strand, 37712073 - 37712204
Alignment:
Q  10 ttattcaaataaagaagctttaatgtattttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaactta 108  Q
    |||| ||||| || ||||||| |||||| ||||||||||| ||||| |||||| | |||||||||  |||||||||| |  |||||||||| | ||||||    
T  37712073 ttatgcaaatgaataagcttttatgtatattcataagcttgtcaaggtagtttatgaaaaaacaacttatgaagatacaactttcgttagtaagaactta 37712172  T
Q  109 ttatgaattaacataaaagcttatttatttacata 143  Q
    |   ||||||||||||||| |||||||||| ||||    
T  37712173 t---gaattaacataaaagtttatttatttgcata 37712204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 15515421 - 15515299
Alignment:
Q  17 aataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatga 114  Q
    |||||| ||||||| ||||||| ||||||||||| ||||| |||||| | |||||| |   |||||||||| | ||||||||||||| |||||||   ||    
T  15515421 aataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaaaaaagagcttatgaagatacaattttcgttagtgagaacttat---ga 15515325  T
Q  115 attaacataaaagcttatttatttac 140  Q
    |||||||| |||||||||||||||||    
T  15515324 attaacatgaaagcttatttatttac 15515299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 9572808 - 9572733
Alignment:
Q  65 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||| |||||||||| |||||| |||||||| |||||||   ||||||| |||||||||||||||||| ||||    
T  9572808 aaaaaacaatttatgaagataaagtttttgttagtgagaacttat---gaattaatataaaagcttatttatttgcata 9572733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 26988158 - 26988285
Alignment:
Q  15 caaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattat 112  Q
    |||||||| ||||||| |||| || ||||||||||| ||||| |||||| | ||||||||   |||||||||| | || |||||||| |||||||||       
T  26988158 caaataaataagcttttatgtcttattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaattgtcgttagtaaaaacttat--- 26988254  T
Q  113 gaattaacataaaagcttatttatttacata 143  Q
    ||||||||||||||||| |||||||| ||||    
T  26988255 gaattaacataaaagctaatttatttgcata 26988285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 6337831 - 6337705
Alignment:
Q  16 aaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatg 113  Q
    ||||||| ||||||| ||||||| ||||||||||| ||||| |||||| | ||||||||   |||||||||| | |||| ||||| || |||||||   |    
T  6337831 aaataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaatttttgttagcgagaacttat---g 6337735  T
Q  114 aattaacataaaagcttatttatttacata 143  Q
    ||||||||||||||||||||| ||| ||||    
T  6337734 aattaacataaaagcttatttgtttgcata 6337705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 143
Target Start/End: Complemental strand, 37329493 - 37329361
Alignment:
Q  10 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaactt 107  Q
    |||| ||||||||  |||||| ||||||| ||||||| ||| ||||| |||||| | ||||||||   |||||||||| | |||||||| |||| |||||    
T  37329493 ttatgcaaataaatgagcttttatgtattattcataaacttgtcaaggtagtttatgaaaaaacagcttatgaagatacaattttcgttggtgagaactt 37329394  T
Q  108 attatgaattaacataaaagcttatttatttacata 143  Q
    || |   |||||||||||||||||||||||| ||||    
T  37329393 ataa---attaacataaaagcttatttatttgcata 37329361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 13038957 - 13039084
Alignment:
Q  15 caaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattat 112  Q
    |||||||| ||||||| || |||| ||||| ||||| | ||| |||||| | |||||||||  |||||||||| ||||||||||||||| ||    ||||    
T  13038957 caaataaataagcttttatatattattcatgagcttgttaaggtagtttatgaaaaaacaacttatgaagataaagttttcgttagtgagaa---gttat 13039053  T
Q  113 gaattaacataaaagcttatttatttacata 143  Q
    ||||||| ||||||| |||||||||| ||||    
T  13039054 gaattaatataaaagtttatttatttgcata 13039084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 35590126 - 35590236
Alignment:
Q  1 taaaacaacttattcaaataaagaagctttaatgtat-tttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttag 98  Q
    ||||||||||||| |||||||| ||||||| ||||||  ||||||||||| ||||| | |||| | ||||||||   |||||||||| | ||||||| ||    
T  35590126 taaaacaacttatgcaaataaataagcttttatgtatagttcataagcttgtcaaggttgtttatgaaaaaacagcttatgaagatacaattttcgtcag 35590225  T
Q  99 tgaaaacttat 109  Q
    ||| |||||||    
T  35590226 tgagaacttat 35590236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 38781181 - 38781239
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacatagcttaaaaataagtcaatcaaaac 167  Q
    |||||||||||||||||||| ||||||||| |||| || ||||||||| ||||| ||||    
T  38781181 ttatgaattaacataaaagcatatttatttgcataactcaaaaataagccaatccaaac 38781239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 31378809 - 31378854
Alignment:
Q  121 ataaaagcttatttatttacata-gcttaaaaataagtcaatcaaa 165  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||    
T  31378809 ataaaagcttatttatttgcataagcttaaaaataagtcaatcaaa 31378854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 16889041 - 16888915
Alignment:
Q  15 caaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattat 112  Q
    |||||||| ||||||| ||||||| ||||||||||| | ||| |||||| | ||||||||   |||||||||| | ||||| ||||||| || ||||       
T  16889041 caaataaataagcttttatgtattattcataagcttgt-aaggtagtttatgaaaaaacagcttatgaagatacaattttcattagtgagaatttat--- 16888946  T
Q  113 gaattaacataaaagcttatttatttacata 143  Q
    || ||||||||||||||||||||||| ||||    
T  16888945 gacttaacataaaagcttatttatttgcata 16888915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 138
Target Start/End: Complemental strand, 1565470 - 1565328
Alignment:
Q  3 aaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct--aaaaaacaatgtatgaagatatagttttcgttagt 99  Q
    ||||| |||||  ||||||| ||||||| ||| ||| ||| ||||||| ||||| |||||| |  |||||| ||  |||||||||| | |||||| ||||    
T  1565470 aaacagcttatgtaaataaacaagcttttatgcattattcgtaagcttgtcaaggtagtttatgaaaaaaataacatatgaagatacaattttcgctagt 1565371  T
Q  100 gaaaacttat----tatgaattaacataaaagcttatttattt 138  Q
    ||  ||||||    |||||| ||||||||||||||||||||||    
T  1565370 gagtacttatgatttatgaaataacataaaagcttatttattt 1565328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 138
Target Start/End: Original strand, 10082248 - 10082383
Alignment:
Q  3 aaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct--aaaaaacaatgtatgaagatatagttttcgttagt 99  Q
    ||||||||||| |||||||| ||| ||| |||| || || ||||| || ||||| |||||| |  |||||||||  |||||| ||| | |||| ||| ||    
T  10082248 aaacaacttatgcaaataaataagtttttatgtgttattgataagtttgtcaaggtagtttatgaaaaaaacaacttatgaaaatacatttttggttcgt 10082347  T
Q  100 gaaaacttattatgaattaacataaaagcttatttattt 138  Q
    || |||||||   ||||||| ||||||||||||||||||    
T  10082348 gagaacttat---gaattaatataaaagcttatttattt 10082383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 18327521 - 18327582
Alignment:
Q  2 aaaacaacttattcaaataaagaagctttaatgtattt-tcataagcttatcaagatagttt 62  Q
    |||||| ||||| |||||||| ||||||| |||||||  |||||||||| ||||||||||||    
T  18327521 aaaacagcttatgcaaataaataagcttttatgtattactcataagcttgtcaagatagttt 18327582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 42591455 - 42591519
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||| | ||||||||||||||| ||||| |   ||||| |||||| ||||||||||||||||    
T  42591455 tatgaagatacacttttcgttagtgaaagcttataa---attaaaataaaaacttatttatttacata 42591519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 47413445 - 47413509
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||| |||  ||| |||||||   ||||| ||||||||||||||||||||||||| ||||    
T  47413445 tatgaagatataatttgtgttggtgaaaa---attataaattaacataaaagcttatttatttgcata 47413509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 6337812 - 6337856
Alignment:
Q  119 acataaaagcttatttatttacat-agcttaaaaataagtcaatc 162  Q
    |||||||||||||||||||||||| ||||  ||||||||||||||    
T  6337812 acataaaagcttatttatttacataagctctaaaataagtcaatc 6337856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 10365167 - 10365307
Alignment:
Q  1 taaaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaaaacaatgtatgaagatatagttttcgttagt 99  Q
    ||||| || |||| ||||| || || |||| ||||||| || |||||||| ||||  |||||| | ||||||||   ||||| ||| | |||||||||||    
T  10365167 taaaataatttatgcaaatgaataaacttttatgtattattaataagcttgtcaaagtagtttatgaaaaacaaccgatgaatatacaattttcgttagt 10365266  T
Q  100 gaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
     ||||||| |||  |||||||||||||||||||| |||| ||||    
T  10365267 aaaaactt-tta--aattaacataaaagcttattcatttgcata 10365307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 41576408 - 41576344
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||| |||| |||||||| |||||| |||  ||||||||||||| |||||||||| ||||    
T  41576408 tatgaagatataatttttgttagtgataactta-tat--attaacataaaagtttatttatttgcata 41576344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 46473156 - 46473231
Alignment:
Q  65 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||  |||||||||| ||||||||||| | | |||||||   ||||||| |||||| ||||||||||| ||||    
T  46473156 aaaaaacaacttatgaagataaagttttcgttaataagaacttat---gaattaatataaaatcttatttatttgcata 46473231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 4026930 - 4027062
Alignment:
Q  9 cttattcaaataaagaagctttaatgtattttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaactt 107  Q
    ||||| |||||||| ||||||| ||||||| |||||||||| ||||| |||||| | ||||||||   |||||||||| | |||| |||||||| |||||    
T  4026930 cttatgcaaataaataagcttttatgtattatcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaatttttgttagtgagaactt 4027029  T
Q  108 attatgaattaacataaaagcttatttatttacata 143  Q
    ||   |||||||||||| ||||||||||||| ||||    
T  4027030 at---gaattaacataatagcttatttatttgcata 4027062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 21788454 - 21788594
Alignment:
Q  2 aaaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagt 99  Q
    |||||| ||||| |||||||| ||||||| || |||| ||||||||||| | |||||||||| | |||||||||  |||||||||| | |||||||||||    
T  21788454 aaaacatcttatgcaaataaataagcttttatttattattcataagcttgttaagatagtttatgaaaaaacaacttatgaagataaaattttcgttagt 21788553  T
Q  100 gaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    || | |||||   ||||||| |||||||||||||||||| ||||    
T  21788554 gagagcttat---gaattaatataaaagcttatttatttgcata 21788594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 143
Target Start/End: Original strand, 8832534 - 8832594
Alignment:
Q  80 aagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||| | |||||||||||||||||||||   |||||||||||||||||||||||||| ||||    
T  8832534 aagatacaattttcgttagtgaaaacttat---gaattaacataaaagcttatttatttgcata 8832594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 169
Target Start/End: Complemental strand, 9140818 - 9140652
Alignment:
Q  2 aaaacaacttattcaaataaagaagctttaatgtattttcataagcttatcaagatagtttcta-aaaaacaatgtatgaagatatagttttcgttagtg 100  Q
    |||||| | ||| |||||||| || |||| ||||||| |||||| ||| ||||  |||||| |  ||||||| | ||||||||| || ||||||||  ||    
T  9140818 aaaacatcgtatgcaaataaataaccttttatgtattatcataaacttgtcaatgtagtttatgtaaaaacagtttatgaagatgtacttttcgttgatg 9140719  T
Q  101 aaaacttattatgaattaacataaaagcttatttatttacata-gcttaaaaataagtcaatcaaaacgg 169  Q
    |||||| || |   ||||||||||||| |||||||| | |||| ||| ||||||||||||||| ||||||    
T  9140718 aaaactcataa---attaacataaaagtttatttatatgcataagctcaaaaataagtcaatccaaacgg 9140652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 143
Target Start/End: Complemental strand, 36501566 - 36501464
Alignment:
Q  39 ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatt 137  Q
    ||||||||||| ||||| |||||| | ||||||||   |||||||||| | ||| ||||||||| |||| ||   |||||||||||||||||||||||||    
T  36501566 ttcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagataaaatttgcgttagtgagaactcat---gaattaacataaaagcttatttatt 36501470  T
Q  138 tacata 143  Q
    | ||||    
T  36501469 tgcata 36501464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 25836801 - 25836662
Alignment:
Q  2 aaaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagt 99  Q
    |||||| ||||| |||||||| | ||||| ||||||| ||||||||||| ||||| |||||| | |||||||    |||||||| | | || ||||||||    
T  25836801 aaaacagcttatgcaaataaatatgcttttatgtattattcataagcttgtcaaggtagtttatgaaaaaacggcttatgaagacacaattatcgttagt 25836702  T
Q  100 gaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    || |||||||   |||| ||||||||||||||||||||| ||||    
T  25836701 gagaacttat---gaat-aacataaaagcttatttatttgcata 25836662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 33321401 - 33321261
Alignment:
Q  2 aaaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagt 99  Q
    |||||||||| | |||||||| ||||||| |||| || ||||||||||| ||||| |||||| | ||||||||   |||||||||| | |||| ||||||    
T  33321401 aaaacaacttgtgcaaataaataagcttttatgtcttattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaatttttgttagt 33321302  T
Q  100 gaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    || | |   || |||||||||||||| | |||||||||| ||||    
T  33321301 gagagc---ttgtgaattaacataaaggtttatttatttgcata 33321261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 38216092 - 38216156
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||| | ||||||||||||| |||||||   || ||||||||||||||||||||||| ||||    
T  38216092 tatgaagatacaattttcgttagtgagaacttat---gagttaacataaaagcttatttatttgcata 38216156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 17317205 - 17317157
Alignment:
Q  123 aaaagcttatttatttacat-agcttaaaaataagtcaatcaaaacgga 170  Q
    |||||||||||||||||||| |||| ||||||||||||||| |||||||    
T  17317205 aaaagcttatttatttacataagctcaaaaataagtcaatccaaacgga 17317157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 143
Target Start/End: Original strand, 37420008 - 37420043
Alignment:
Q  108 attatgaattaacataaaagcttatttatttacata 143  Q
    ||||||||||||||||||||||||||||||| ||||    
T  37420008 attatgaattaacataaaagcttatttatttgcata 37420043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 42064886 - 42064988
Alignment:
Q  39 ttcataagcttatcaagatagtttctaaaaaac-aatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatt 137  Q
    ||||||||||| | ||| |||||| |||||||  ||  |||||||||||  ||||||||||| | |||||||   ||||||| |||||||||||||||||    
T  42064886 ttcataagcttgttaaggtagtttataaaaaaataacttatgaagatatcattttcgttagtaagaacttat---gaattaatataaaagcttatttatt 42064982  T
Q  138 tacata 143  Q
    | ||||    
T  42064983 tgcata 42064988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 143
Target Start/End: Complemental strand, 7480949 - 7480848
Alignment:
Q  39 ttcataagcttatcaagatagtttctaaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttattt 138  Q
    |||||||| || | ||| |||||| ||||||||||  || ||||||| | ||||| ||||| | |||||||   |||||||||||||| |||||||||||    
T  7480949 ttcataagtttgtgaaggtagtttataaaaaacaacttaggaagatacaattttcattagtcagaacttat---gaattaacataaaaacttatttattt 7480853  T
Q  139 acata 143  Q
     ||||    
T  7480852 gcata 7480848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 17546486 - 17546561
Alignment:
Q  65 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||  |||||| ||||  |||||||||||||||||   |||| || ||||||||||  |||||||||||||||    
T  17546486 aaaaaacaacttatgaatatatcattttcgttagtgaaaac---ttataaactaacataaaaatttatttatttacata 17546561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 27881021 - 27880946
Alignment:
Q  65 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||| ||||||  |||| ||||||||| |||||||   ||||||||||| ||||||  |||||||||| ||||    
T  27881021 aaaaaacaatttatgaaagtatacttttcgttaatgaaaac---ttatgaattaagataaaaatttatttatttgcata 27880946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 29774818 - 29774877
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttattt 138  Q
    |||||| ||| | ||||||||||||| |||||||   |||||||| |||||||||||||||||    
T  29774818 tatgaaaatacaattttcgttagtgagaacttat---gaattaacgtaaaagcttatttattt 29774877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 143
Target Start/End: Complemental strand, 30382289 - 30382218
Alignment:
Q  69 aacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||| || ||||||| | ||||||||||||||| ||||| |   ||||| | |||||||||||||||||||||    
T  30382289 aacaatttaggaagatacaattttcgttagtgaaagcttataa---attaaaacaaaagcttatttatttacata 30382218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 42839393 - 42839278
Alignment:
Q  18 ataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaat 116  Q
    ||||| ||| ||| ||||||| |||||||| || ||||| |||||| | |||| ||   |||||||||  | |||||||||| |||||||||| |   ||    
T  42839393 ataaataagtttttatgtattattcataagtttgtcaagttagtttatgaaaaccagcttatgaagatgcaattttcgttagagaaaacttatca---at 42839297  T
Q  117 taacataaaagcttattta 135  Q
    |||||||||||||||||||    
T  42839296 taacataaaagcttattta 42839278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 34286638 - 34286513
Alignment:
Q  16 aaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatga 114  Q
    ||||||| ||||||| ||||||| ||||||||||| ||||| |||||| | |||||||   |||||||||| | |||||||||| || |||||||   ||    
T  34286638 aaataaataagcttttatgtattattcataagcttgtcaaggtagtttgtgaaaaacagcttatgaagatacaattttcgttagggagaacttat---ga 34286542  T
Q  115 attaacataaaagcttatttatttacata 143  Q
    ||||| |||||||||||||||||| ||||    
T  34286541 attaatataaaagcttatttatttgcata 34286513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 25333714 - 25333650
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||| | |||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  25333714 tatgaagatacaattttcgttagtgaaaacttat---gaattaacataaaagcttatttatttacata 25333650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 169
Target Start/End: Complemental strand, 35168508 - 35168360
Alignment:
Q  24 aagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaaca 121  Q
    ||||||| ||||||| ||||||||||| ||||| |||||| | |||||||| | |||||||||| | ||||||| ||| | ||    ||||||||||||     
T  35168508 aagcttttatgtattattcataagcttgtcaaggtagtttatgaaaaaacagtttatgaagatacaattttcgtcagttagaagaacttatgaattaact 35168409  T
Q  122 taaaagcttatttatttacat-agcttaaaaataagtcaatcaaaacgg 169  Q
    |||||||| |||||||||||| |||| ||||||||| ||||| ||||||    
T  35168408 taaaagctgatttatttacataagctcaaaaataagccaatccaaacgg 35168360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 32975691 - 32975824
Alignment:
Q  9 cttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaaa-acaatgtatgaagatatagttttcgttagtgaaaact 106  Q
    ||||| |||||||| ||||||| || |||| ||||||||||| ||||| |||||| | |||| ||||  |||||||||| | |||| ||| |||| ||||    
T  32975691 cttatgcaaataaataagcttttatatattattcataagcttgtcaaggtagtttatgaaaacacaacttatgaagatacaatttttgtttgtgagaact 32975790  T
Q  107 tattatgaattaacataaaagcttatttatttacata 143  Q
    |||   ||||||| |||||||||||||||||| ||||    
T  32975791 tat---gaattaatataaaagcttatttatttgcata 32975824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 25465891 - 25465796
Alignment:
Q  45 agcttatcaagatagtttctaaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    ||||| |||||  ||||| | ||||||||  |||||||||| | |||| |||| |||||||||||   |||||||||||||||||||||||||| ||||    
T  25465891 agcttgtcaaggaagtttatgaaaaacaacttatgaagatacaatttttgttactgaaaacttat---gaattaacataaaagcttatttatttgcata 25465796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 25671888 - 25671839
Alignment:
Q  91 ttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    ||||||||||||||||||| |   |||||||||||||||||||||||||||||    
T  25671888 ttcgttagtgaaaacttataa---attaacataaaagcttatttatttacata 25671839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 142
Target Start/End: Original strand, 8752909 - 8752942
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacat 142  Q
    ||||||||||||||||||||||||||||||||||    
T  8752909 ttatgaattaacataaaagcttatttatttacat 8752942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 24350532 - 24350468
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||| ||||||||||| | |||||||   |||||||||||||| ||||||||||| ||||    
T  24350532 tatgaagatataattttcgttagtaagaacttat---gaattaacataaaatcttatttatttgcata 24350468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 28879062 - 28879192
Alignment:
Q  9 cttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaa-aacaatgtatgaagatatagttttcgttagtgaaa--a 104  Q
    ||||| |||||||| ||||||| ||||||| ||||||||||| ||||| |||||| | ||| |||||  |||||||||     ||| ||||||||||  |    
T  28879062 cttatgcaaataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaaataacaacttatgaagat-----ttttgttagtgaaagaa 28879156  T
Q  105 cttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||   |||||||||||||||||||||||||| ||||    
T  28879157 cttat---gaattaacataaaagcttatttatttgcata 28879192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 32131437 - 32131577
Alignment:
Q  2 aaaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaa-aaacaatgtatgaagatatagttttcgttagt 99  Q
    |||||| ||||| |||||||| ||||||| ||| ||| ||| |||| || ||||| |||||| | || ||||||  |||||||||| | |||||  ||||    
T  32131437 aaaacagcttatgcaaataaataagcttttatgcattattcctaagtttgtcaaggtagtttatgaataaacaacctatgaagatacaattttcaatagt 32131536  T
Q  100 gaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    || |||||||   |||||||||||||||||||| ||||| ||||    
T  32131537 gagaacttat---gaattaacataaaagcttatctatttgcata 32131577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 34286619 - 34286668
Alignment:
Q  119 acataaaagcttatttatttacat-agcttaaaaataagtcaatcaaaac 167  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| ||||    
T  34286619 acataaaagcttatttatttacataagctcaaaaataagtcaatccaaac 34286668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 25333776 - 25333712
Alignment:
Q  45 agcttatcaagatagtttctaaaaaacaatgtatgaagatatagttttcgttagtgaaaacttat 109  Q
    ||||| ||||| |||||| | ||||||||  |||||||||| | |||||||||||||||||||||    
T  25333776 agcttgtcaaggtagtttatgaaaaacaacttatgaagatacaattttcgttagtgaaaacttat 25333712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 32213078 - 32213122
Alignment:
Q  119 acataaaagcttatttatttacat-agcttaaaaataagtcaatc 162  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  32213078 acataaaagcttatttatttgcataagcttaaaaataagtcaatc 32213122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 35055484 - 35055558
Alignment:
Q  65 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    ||||||| || |||||||||| | ||||||||||||| | |||||   ||||||| |||||||||||||||||||||||    
T  35055484 aaaaaaccatttatgaagatacaattttcgttagtgagagcttat---gaattaa-ataaaagcttatttatttacata 35055558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 32924236 - 32924167
Alignment:
Q  65 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttattt 138  Q
    |||||||||  |||||||||| | ||||| |||||||||||||||   ||||||| ||||||||||||||||||    
T  32924236 aaaaaacaacttatgaagataaaattttc-ttagtgaaaacttat---gaattaatataaaagcttatttattt 32924167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 2669751 - 2669785
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||||||||||||||||||||| ||||    
T  2669751 ttatgaattaacataaaagcttatttattttcata 2669785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 138
Target Start/End: Complemental strand, 2019623 - 2019594
Alignment:
Q  109 ttatgaattaacataaaagcttatttattt 138  Q
    ||||||||||||||||||||||||||||||    
T  2019623 ttatgaattaacataaaagcttatttattt 2019594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 9131000 - 9130939
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacat-agcttaaaaataagtcaatcaaaacgg 169  Q
    ||||||||||||||||||| |||||||||| ||| |||| ||||  ||||||||| ||||||    
T  9131000 ttatgaattaacataaaagtttatttatttgcataagctcaaaatcaagtcaatccaaacgg 9130939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 38338864 - 38338800
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||  ||||||||||||| ||||||| |   ||||| |||||| ||||||||||||||||    
T  38338864 tatgaagatatgattttcgttagtgagaacttataa---attaaaataaaaacttatttatttacata 38338800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 42363330 - 42363266
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||| | |||| |||||||| ||||| |||  |||||| |||||||||||||||||||||||    
T  42363330 tatgaagatacaatttttgttagtgagaactt-tta--aattaaaataaaagcttatttatttacata 42363266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 10874057 - 10874138
Alignment:
Q  76 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacat-agcttaaaaataagtca 159  Q
    |||||||||| | |||| ||| ||||||||||||   |||||||||||||||||||||||||| ||| |||| ||||||||||||    
T  10874057 tatgaagatacaattttagttggtgaaaacttat---gaattaacataaaagcttatttatttgcataagctaaaaaataagtca 10874138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 12816902 - 12816850
Alignment:
Q  89 ttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    ||||||||||||| ||||||  |||||||||||||||||||||||||||| ||||    
T  12816902 ttttcgttagtgagaactta--atgaattaacataaaagcttatttatttgcata 12816850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 143
Target Start/End: Original strand, 2255838 - 2255871
Alignment:
Q  110 tatgaattaacataaaagcttatttatttacata 143  Q
    ||||||||||||||||||||||||||||||||||    
T  2255838 tatgaattaacataaaagcttatttatttacata 2255871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 10687304 - 10687447
Alignment:
Q  2 aaaacaacttattcaaataaagaagctttaatgtatttt----cataagcttatcaagatagtttcta-aaaaacaatgtatgaagatatagttttcgtt 96  Q
    |||||| ||||| |||||||| ||||||| |||||||||    ||||||| ||| ||| |||||| |  ||||||||  |||| ||||| | ||||||||    
T  10687304 aaaacagcttatgcaaataaataagctttgatgtatttttattcataagcctattaaggtagtttatgtaaaaacaacttatggagatacaattttcgtt 10687403  T
Q  97 agtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    || || |||||||   ||| | |||||||||||||||||||| ||||    
T  10687404 agcgagaacttat---gaactgacataaaagcttatttatttgcata 10687447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 3210972 - 3210938
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||||||||||||||||||||| ||||    
T  3210972 ttatgaattaacataaaagcttatttatttgcata 3210938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 9201704 - 9201670
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||||||||||||||||||||| ||||    
T  9201704 ttatgaattaacataaaagcttatttatttgcata 9201670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 9202382 - 9202348
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacata 143  Q
    ||||||||||||||||||||||||||||| |||||    
T  9202382 ttatgaattaacataaaagcttatttattaacata 9202348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 10755266 - 10755232
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||||||||||||||||||||| ||||    
T  10755266 ttatgaattaacataaaagcttatttatttgcata 10755232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 35071411 - 35071377
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||||||||||||||||||||| ||||    
T  35071411 ttatgaattaacataaaagcttatttatttgcata 35071377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 8014785 - 8014925
Alignment:
Q  2 aaaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagt 99  Q
    |||||| ||||| |||||||  ||||||| ||  ||| ||||||||||| ||||| |||||| | |||||||    |||||||||| | |||| ||||||    
T  8014785 aaaacagcttatgcaaataagtaagcttttattcattattcataagcttgtcaaggtagtttatgaaaaaactgcatatgaagatacaattttggttagt 8014884  T
Q  100 gaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    ||||||| || |   ||||||||||||||||||| |||| ||||    
T  8014885 gaaaactgataa---attaacataaaagcttattaatttgcata 8014925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 29623501 - 29623427
Alignment:
Q  65 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||  |||||| ||| ||||||||||||||| |||   |||||||||||||| ||| ||||||||||| ||||    
T  29623501 aaaaaacaacttatgaaaataaagttttcgttagtgagaac---ttatgaattaacat-aaatcttatttatttgcata 29623427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 32165285 - 32165210
Alignment:
Q  65 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
    |||||||| | |||||||||| | ||||||||||||| | ||||| |   ||||| |||||| ||||||||||||||||    
T  32165285 aaaaaacagtttatgaagatacaattttcgttagtgagagcttataa---attaaaataaaaacttatttatttacata 32165210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 24477 - 24338
Alignment:
Q  2 aaaacaacttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaa-aacaatgtatgaagatatagttttcgttagt 99  Q
    |||||| ||||| |||||||| | ||||  ||||||| ||||||||||| ||||| |||||  ||||| |||||  || ||||||||| |||||||||||    
T  24477 aaaacagcttatgcaaataaata-gcttgtatgtattattcataagcttgtcaaggtagttgataaaataacaacttacgaagatataattttcgttagt 24379  T
Q  100 gaaaacttattatgaattaacataaaagcttatttatttacata 143  Q
     |||||   || ||||||| ||||||||| ||||||||| ||||    
T  24378 aaaaac---ttgtgaattatcataaaagcctatttatttgcata 24338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 48611 - 48577
Alignment:
Q  109 ttatgaattaacataaaagcttatttatttacata 143  Q
    |||||||||||||||||||||||||||||| ||||    
T  48611 ttatgaattaacataaaagcttatttatttgcata 48577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University