View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_high_55 (Length: 260)
Name: NF3107_high_55
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_high_55 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 37 - 260
Target Start/End: Complemental strand, 40804462 - 40804239
Alignment:
| Q |
37 |
agaaaggctttgtaactcttaacatatgtttggatgaacggtgagtttggtaaaatcatagtgacaatgtgctccaaagtgcaactttaattcaaacgtg |
136 |
Q |
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| T |
40804462 |
agaaaggctttgtaactcttaacgtatgtttggatgaacggtgagtttggtaaaatcacagtgacaatgtgctccaaagtgcaactttagtccaaacgtg |
40804363 |
T |
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| Q |
137 |
gtgactcgccgtgattctatcattcttaatgtgaatccagacatgcatgcatgttcaaattttatgtcgatggattttatgtcaatggaaaataaataaa |
236 |
Q |
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| T |
40804362 |
gtgactcgccgtgattctatcattcttaatgtgaatccagacatgcatgcatgttcaaattttatgtcgatggattttatgtcaatggaaaataaataaa |
40804263 |
T |
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| Q |
237 |
acaagcagcaaagaaattaggcta |
260 |
Q |
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| T |
40804262 |
acaagcagcaaagaaattaggcta |
40804239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 40804687 - 40804658
Alignment:
| Q |
10 |
aagaagaataacatagagaggaaattgaga |
39 |
Q |
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| T |
40804687 |
aagaagaataacatagagaggaaattgaga |
40804658 |
T |
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