View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3107_high_6 (Length: 610)
Name: NF3107_high_6
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 534; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 17 - 591
Target Start/End: Original strand, 37929628 - 37930204
Alignment:
| Q |
17 |
cataggaatacggggcatgggagggataggcaaaacaacaattgccaatgcaatctatcataaattctcaactcagttcagttccaaaagcatcattcta |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37929628 |
cataggaatacggggcatgggagggataggcaaaacaacaattgccaatgcaatctatcatcaattctcaactcagttcagttccaaaagcatcattcta |
37929727 |
T |
|
| Q |
117 |
aatgctcaacaagaaatagaaagaacttgactatgccatgtacaaagaaaatacttatcacaacttctagaggaagacattacatcctctggattcaagt |
216 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37929728 |
aatgctcaacaagaaatagaaagagctggactacgccatgtacaaagaaaatacttatcacaacttctagaggaagacattacatcctctggattcaagt |
37929827 |
T |
|
| Q |
217 |
tttcatacattccaaggcttcaacgaggagaggttctccttgttcttgatgacgtgaacgattcagatcaacttgaaggtttaattggtcgtagtacc-- |
314 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37929828 |
tttcatacattccaaggcttcaacgaggaaaggttctccttgttcttgatgacgtgaacgattcagatcaacttgaaggtttaattggtcgtagtacctt |
37929927 |
T |
|
| Q |
315 |
tttggccttgggagtagaatcattgtgactagtagagacaagcaagtgcttgagaatgccaatgctgatgaaatatatgaagttagggagatggattttc |
414 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37929928 |
tttggccttgggagtagaatcattgtgagtagtagagacaagcaagtgcttgagaatgccaatgccgatgaaatatatgaagttagggagatggattttc |
37930027 |
T |
|
| Q |
415 |
aagattctctacaactcttctgtttaagtgcttttaaacaaaactatccaatagaaacttatgtgagcttatcagaaaaggtattaaattatgctaaagg |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37930028 |
aagattctctacaactcttctgtttaagtgcttttaaacaaaactatccaatataaacttatgtgagcttatcagaaaaggtattaaattatgctaaagg |
37930127 |
T |
|
| Q |
515 |
agttccattagctctcaaagttttgggattattgcttcttggcagaacaaagaaagcatgggaaagtgagttgcaaa |
591 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37930128 |
agttccattagctctcaaagttttgggattattgcttcttggcagaacaaagaaagcatgggaaagtgagttgcaaa |
37930204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 591
Target Start/End: Complemental strand, 37957959 - 37957379
Alignment:
| Q |
17 |
cataggaatacggggcatgggagggataggcaaaacaacaattgccaatgcaatctatcataaattctcaactcagttcagttccaaaagcatcattcta |
116 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||| || |||||||||||||||||| ||||||| ||||| |
|
|
| T |
37957959 |
cataggaatatggggcatgggagggacaggcaaaacaacaattgccagtgcaatctatcataaactcgcaactcagttcagttccagaagcatcgttcta |
37957860 |
T |
|
| Q |
117 |
aatgctcaacaagaaatagaaagaacttgactatgccatgtacaaagaaaatacttatcacaacttctagaggaagacattacatcctctggattcaagt |
216 |
Q |
| |
|
|||| |||||||||| |||||| || ||||| |||||||| |||||||||||||||| |||||||||| |||||||||||||||||| || ||| | |
|
|
| T |
37957859 |
aatgtgaaacaagaaatcgaaagagctggactagaccatgtacgaagaaaatacttatcagaacttctagatgaagacattacatcctctaaatccaatt |
37957760 |
T |
|
| Q |
217 |
tttcatacattccaaggcttcaacgaggagaggttctccttgttcttgatgacgtgaacgattcagatcaacttgaaggtttaattgg------tcgtag |
310 |
Q |
| |
|
|||||| ||||||||| |||| | || ||||||||||||||||||| ||||| ||||| ||||||||||||| ||||||||| || ||| |
|
|
| T |
37957759 |
tttcatttgatccaaggctcaaacggacaaagattctccttgttcttgatgatgtgaaagattctgatcaacttgaagatttaattggaacacatcatag |
37957660 |
T |
|
| Q |
311 |
tacctttggccttgggagtagaatcattgtgactagtagagacaagcaagtgcttgagaatgccaatgctgatgaaatatatgaagttagggagatggat |
410 |
Q |
| |
|
|| |||||||| |||||||||| ||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||| |||| | ||||||| | |
|
|
| T |
37957659 |
taactttggccaagggagtagaaccattgtgactaacagagacaagcaagtgctcaagaatggcaatgctgatgaaatatataaagtaaatgagatgggt |
37957560 |
T |
|
| Q |
411 |
tttcaagattctctacaactcttctgtttaagtgcttttaaacaaaactatccaatagaaacttatgtgagcttatcagaaaaggtattaaattatgcta |
510 |
Q |
| |
|
| ||||||||||||| |||||||||||| | |||||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||| ||||||||| |
|
|
| T |
37957559 |
tctcaagattctctaaaactcttctgttcatttgcttttaaacaaaaccatccaatagaaccttatgtgagtttatcaaaaaaggtattagattatgcta |
37957460 |
T |
|
| Q |
511 |
aaggagttccattagctctcaaagttttgggattattgcttcttggcagaacaaagaaagcatgggaaagtgagttgcaaa |
591 |
Q |
| |
|
| || ||||| |||| || ||||||||||| ||| |||| ||||||| | || |||||||||||||| | ||||||| |
|
|
| T |
37957459 |
acggggttccggtagcgcttaaagttttgggcaaatttcttcagggcagaaaagaggaagcatgggaaagtcatttgcaaa |
37957379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 251 - 591
Target Start/End: Complemental strand, 44644538 - 44644195
Alignment:
| Q |
251 |
tctccttgttcttgatgacgtgaacgattcagatcaacttgaaggtttaattggt---cgtagtacctttggccttgggagtagaatcattgtgactagt |
347 |
Q |
| |
|
|||||||||||||||||| || ||| |||| ||||||||| || ||||||||| | ||||| |||| | || |||||||||||||||||||| |
|
|
| T |
44644538 |
tctccttgttcttgatgatgttaacaattcggatcaacttagagatttaattggaaagcttagtaagtttgcaccaggtagtagaatcattgtgactagc |
44644439 |
T |
|
| Q |
348 |
agagacaagcaagtgcttgagaatgccaatgctgatgaaatatatgaagttagggagatggattttcaagattctctacaactcttctgtttaagtgctt |
447 |
Q |
| |
|
||||||| ||| || || |||||| ||| ||||||| |||||||||||| | ||||||| ||||||| || ||||||| |||||||||||||| ||| | |
|
|
| T |
44644438 |
agagacatgcaggtactgaagaatgtcaaagctgatggaatatatgaagtcaaggagatgaattttcatgaatctctacgactcttctgtttaaatgcct |
44644339 |
T |
|
| Q |
448 |
ttaaacaaaactatccaatagaaacttatgtgagcttatcagaaaaggtattaaattatgctaaaggagttccattagctctcaaagttttgggattatt |
547 |
Q |
| |
|
||||||||| ||||| ||||| ||| ||| | |||||||| || ||||||||||||| ||| | ||||||||||| |||||||||||||| || || |
|
|
| T |
44644338 |
ttaaacaaagttatcccttagaaggttacgtggggttatcagagaatatattaaattatgccaaaagggttccattagcactcaaagttttgggtttttt |
44644239 |
T |
|
| Q |
548 |
gcttcttggcagaacaaagaaagcatgggaaagtgagttgcaaa |
591 |
Q |
| |
|
||| || ||| ||||| |||||||||||||| |||| |||| |
|
|
| T |
44644238 |
actttgcggtagaccaaaggaagcatgggaaagtcagttacaaa |
44644195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 44644770 - 44644649
Alignment:
| Q |
19 |
taggaatacggggcatgggagggataggcaaaacaacaattgccaatgcaatctatcataaattctcaactcagttcagttccaaaagcatcattctaaa |
118 |
Q |
| |
|
||||||| |||| |||||||| ||||| |||||||||||||| | |||||| |||| ||||| |||| || ||||||| || |||||||| ||||| |
|
|
| T |
44644770 |
taggaatctggggtatgggaggaatagggaaaacaacaattgctagtgcaatatatcgcaaattggcaacccaattcagttttaacagcatcatcctaaa |
44644671 |
T |
|
| Q |
119 |
tgctcaacaagaaatagaaaga |
140 |
Q |
| |
|
|| ||||||||||||||| ||| |
|
|
| T |
44644670 |
tgttcaacaagaaatagagaga |
44644649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 314 - 591
Target Start/End: Original strand, 25721507 - 25721787
Alignment:
| Q |
314 |
ctttggccttgggagtagaatcattgtgactagtagagacaagcaagtgcttgagaatgccaatgctgatgaaatatatgaagttagggagatggatttt |
413 |
Q |
| |
|
|||||||| || |||||||||||| |||||||||||||||| || |||||| ||||||||| | | ||||||||||| ||||| | ||||||| |||| |
|
|
| T |
25721507 |
ctttggccagggtagtagaatcattatgactagtagagacaaacatgtgcttaagaatgccatttcagatgaaatatacgaagtcaaggagatgtgtttt |
25721606 |
T |
|
| Q |
414 |
caagattctctacaactcttctgtttaagtgcttttaaacaaaactatccaatagaaacttatgtgagcttatcagaaaag---gtattaaattatgcta |
510 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||| ||||||||||||||||| ||| || ||||||| ||||||||||||| |||||||| |||||| |
|
|
| T |
25721607 |
caagattcagtacaactcttcagtttaaatgcctttaaacaaaactatcctataaaagcttatgtagacttatcagaaaagcttgtattaaaccatgcta |
25721706 |
T |
|
| Q |
511 |
aaggagttccattagctctcaaagttttgggattattgcttcttggcagaacaaagaaagcatgggaaagtgagttgcaaa |
591 |
Q |
| |
|
|| | |||||| ||| |||||| |||||| |||||||||| ||| ||||||| | | |||||||||||||| ||||||| |
|
|
| T |
25721707 |
aaagggttccactagttctcaagaatttggggttattgcttcatggtagaacaagggatgcatgggaaagtgaattgcaaa |
25721787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 327 - 430
Target Start/End: Original strand, 19869225 - 19869328
Alignment:
| Q |
327 |
agtagaatcattgtgactagtagagacaagcaagtgcttgagaatgccaatgctgatgaaatatatgaagttagggagatggattttcaagattctctac |
426 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||| ||||| |||||||||||||||||||||| | |||||| |||||||||||||||||| |
|
|
| T |
19869225 |
agtagaatcattgtgactagtagagacatgcaagtacttaagaatatagatgctgatgaaatatatgaagtgaatgagatgaattttcaagattctctac |
19869324 |
T |
|
| Q |
427 |
aact |
430 |
Q |
| |
|
|||| |
|
|
| T |
19869325 |
aact |
19869328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 34727887 - 34727847
Alignment:
| Q |
21 |
ggaatacggggcatgggagggataggcaaaacaacaattgc |
61 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
34727887 |
ggaatatggggcatgggagggatcggcaaaacaacaattgc |
34727847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 34731045 - 34731005
Alignment:
| Q |
21 |
ggaatacggggcatgggagggataggcaaaacaacaattgc |
61 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
34731045 |
ggaatatggggcatgggagggatcggcaaaacaacaattgc |
34731005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 537
Target Start/End: Original strand, 19869352 - 19869406
Alignment:
| Q |
483 |
ttatcagaaaaggtattaaattatgctaaaggagttccattagctctcaaagttt |
537 |
Q |
| |
|
|||||||| ||||| ||||||| ||||||||| | ||||||||||||||||||| |
|
|
| T |
19869352 |
ttatcagagaaggttttaaattgtgctaaagggatcccattagctctcaaagttt |
19869406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 34735637 - 34735604
Alignment:
| Q |
28 |
ggggcatgggagggataggcaaaacaacaattgc |
61 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
34735637 |
ggggcatgggagggatcggcaaaacaacaattgc |
34735604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 18928839 - 18928879
Alignment:
| Q |
21 |
ggaatacggggcatgggagggataggcaaaacaacaattgc |
61 |
Q |
| |
|
|||||| |||| ||||||||||| ||||||||||||||||| |
|
|
| T |
18928839 |
ggaatatggggtatgggagggatcggcaaaacaacaattgc |
18928879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University