View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_high_60 (Length: 252)
Name: NF3107_high_60
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_high_60 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 8165441 - 8165202
Alignment:
| Q |
13 |
cataggtcattattgtagttttccataatttgtaatgaagaagggaattctaaataagctcttaattgtaacaaggtttgactttgatcttgttctaact |
112 |
Q |
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| T |
8165441 |
cataggtcattattgtagttttccataatttgtaatgaagaagggaattctaaataagctcttaattgtaacaaggtttgactttgatcttgttctaact |
8165342 |
T |
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| Q |
113 |
catgagtatttgaaatgaataacaaaaaccatgaaagaaacaaaagatgaaagtgaaagtacctcattgaattgccaaattggaacattatgcaccaaat |
212 |
Q |
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| T |
8165341 |
catgagtatttgaaatgaataacaaaaaccatgaaagaaacaaaagatgaaagtgaaagtacctcattgaattgccaaattggaacattatgcaccaaat |
8165242 |
T |
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| Q |
213 |
atgattgaagtaagcatcaaatattcaaagtagttttcaa |
252 |
Q |
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| T |
8165241 |
atgattgaagtaagcatcaaatattcaaagtagttttcaa |
8165202 |
T |
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