View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_high_69 (Length: 242)
Name: NF3107_high_69
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_high_69 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 62 - 231
Target Start/End: Complemental strand, 36196442 - 36196273
Alignment:
| Q |
62 |
atattaacttggagggcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagat |
161 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36196442 |
atattaacttggagtgcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagat |
36196343 |
T |
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| Q |
162 |
gttttgtcgatttttctacacagatccttgcaatacgagttttataatttagtagtctgtttggttgatg |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36196342 |
gttttgtcgatttttctacacagatccttgcaatacgagttttataatttagtagtctgtttggttgatg |
36196273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 62 - 231
Target Start/End: Complemental strand, 36209565 - 36209405
Alignment:
| Q |
62 |
atattaacttggagggcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagat |
161 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||| |||||||||||| |
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| T |
36209565 |
atattaacttggagtgcaaggctatgctttgacctgataaataattgtataattat---------tgtacaatgtttgaaatctcaaaattttaggagat |
36209475 |
T |
|
| Q |
162 |
gttttgtcgatttttctacacagatccttgcaatacgagttttataatttagtagtctgtttggttgatg |
231 |
Q |
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| T |
36209474 |
gttttgtcgatttttctacacagatccttggaatacaagttttataatttattagtctgtttggttgatg |
36209405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 64 - 197
Target Start/End: Complemental strand, 36184179 - 36184044
Alignment:
| Q |
64 |
attaacttggagggcaaggctatgcttt-gacctgataaataattgtataa-ttgtaaaggcttttgtactatgtttgaaatctcaatattttaggagat |
161 |
Q |
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|||||||| ||| | ||||||||| ||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36184179 |
attaactttgagtgtaaggctatgtttttgaccggataaataattgtataaattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagat |
36184080 |
T |
|
| Q |
162 |
gttttgtcgatttttctacacagatccttgcaatac |
197 |
Q |
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|||||||| ||||||||||||||||||||| ||||| |
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| T |
36184079 |
gttttgtctatttttctacacagatccttggaatac |
36184044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 62 - 150
Target Start/End: Complemental strand, 36188121 - 36188033
Alignment:
| Q |
62 |
atattaacttggagggcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaata |
150 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| |
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| T |
36188121 |
atattaacttggagtgcaaggctatggtttgacctgataaataattgtataattctgaagtcttttgtactatgtttgaaatctcaata |
36188033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 179
Target Start/End: Complemental strand, 36185568 - 36185468
Alignment:
| Q |
79 |
aaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagatgttttgtcgatttttct |
178 |
Q |
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||||||||| ||| |||| |||| ||||| | |||||||| ||||||| |||||||||| || ||||||||||||| || ||||||| ||||||||| |
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| T |
36185568 |
aaggctatgtttttacctcataactaattatgtaattgtactagcttttgcactatgtttgcaaagtcaatattttaggggaggttttgttgatttttct |
36185469 |
T |
|
| Q |
179 |
a |
179 |
Q |
| |
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| |
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| T |
36185468 |
a |
36185468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 36201811 - 36201749
Alignment:
| Q |
77 |
gcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttg |
139 |
Q |
| |
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||||||||||| ||| ||| ||||||||||| | |||||||| |||||||||||| ||||||| |
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|
| T |
36201811 |
gcaaggctatgttttaaccagataaataattttgtaattgtataggcttttgtacgatgtttg |
36201749 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 36203209 - 36203113
Alignment:
| Q |
79 |
aaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagatgttttgtcgatttt |
175 |
Q |
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||||||||| ||| | |||||||||||||| |||||||| | ||||||||||||| |||| | ||||||||| || ||||||||||| ||||| |
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| T |
36203209 |
aaggctatgtttttaactgataaataattgcgtaattgtacaagcttttgtactatttttggcgtgtcaatatttatggggatgttttgtctatttt |
36203113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 36214316 - 36214245
Alignment:
| Q |
70 |
ttggagggcaaggctatgctttgacctgataaataattgtataattgtaaag--gcttttgtactatgtttg |
139 |
Q |
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|||||| | ||| ||||| ||||||||||||||||||| | ||||||||| | |||||||||||||||||| |
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| T |
36214316 |
ttggagtgtaagtctatgttttgacctgataaataattatgtaattgtaagggcgcttttgtactatgtttg |
36214245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 36215673 - 36215577
Alignment:
| Q |
124 |
ttttgtactatgtttgaaatctcaatattttaggagatgttttgtcgatttttctacacaga-tccttgcaatacgagttttataatttagtagtct |
219 |
Q |
| |
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|||||||||||||||| || ||||||||| | | || |||||||| |||||||| | | | |||||| ||||| ||||||||||||||||||||| |
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| T |
36215673 |
ttttgtactatgtttgggatgtcaatatttcaagggaggttttgtccatttttctgtagaaattccttggaatacaagttttataatttagtagtct |
36215577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 36208720 - 36208659
Alignment:
| Q |
163 |
ttttgtcgatttttctacacagat-ccttgcaatacgagttttataatttagtagtctgttt |
223 |
Q |
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|||||| |||||||||| ||| || |||||| |||| |||||||||||||||| |||||||| |
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| T |
36208720 |
ttttgttgatttttctatacaaattccttgctatacaagttttataatttagtggtctgttt |
36208659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 36196503 - 36196475
Alignment:
| Q |
1 |
ttgctaaatagtatagcatattgtagctg |
29 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
36196503 |
ttgctaaatagtatagcatattgtagctg |
36196475 |
T |
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