View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_high_76 (Length: 237)
Name: NF3107_high_76
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_high_76 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 37753517 - 37753297
Alignment:
| Q |
1 |
aagtaatgtgtttgtagcatttttgttggtggttcatcttgtttcaacatgttcctatttcttcgtacttcccaaagcaatgtttgaataaatgtggtga |
100 |
Q |
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| T |
37753517 |
aagtaatgtgtttgtagcatttttgttggtggttcatcttgtttcaacatgttcctatttcttcgtacttcccaaagcaatgtttgaataaatgtggtga |
37753418 |
T |
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| Q |
101 |
tcgagtgagtgaatcatacaaaccaccttaaatctcgatcaccgacacccatcataccaagtcaacaaccctaccacgtcagctgcacnnnnnnngttct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
37753417 |
tcgagtgagtgaatcatacaaaccaccttaaatctcgatcaccaacacccatcataccaagtcaacaaccctaccacgtcagcagcacaaaaaaagttct |
37753318 |
T |
|
| Q |
201 |
tcgacaaactattatgaagaa |
221 |
Q |
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|| |||||||||||||||||| |
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| T |
37753317 |
tcaacaaactattatgaagaa |
37753297 |
T |
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