View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3107_high_8 (Length: 574)
Name: NF3107_high_8
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 10 - 555
Target Start/End: Complemental strand, 38931631 - 38931084
Alignment:
| Q |
10 |
gtgaaggagaagaagaggaagtggtagaagagagagaaacaaaaactaaagagcattgtcaccatggtgaaaaagaaagaagccatggtgagagaacaag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38931631 |
gtgaaggagaagaagaggaagtggtagaagagagagaaacaaaaactaaagagcattgtcaccatggtgaaaaagaaagaagccatggtgagagaacaag |
38931532 |
T |
|
| Q |
110 |
aaccagagaacatgaagaacaacacaacttcttcgatgaaaccgtttgcacattgaagcttcatgagaacatagctgatccttcacgtgccgatgtgttt |
209 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38931531 |
aaccagagaacatgaaggacaacacaacttcttcgatgaaactgtttgcacattgaagcttcatgagaacatagctgatccttcacgtgccgatgtgttt |
38931432 |
T |
|
| Q |
210 |
aacccaagagcaggtcgtataacgaatgtcaatagtttgactctcccagttctcaaattgcttcatcttagtgcccaatgggtttacctctacaaggtaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38931431 |
aacccaagagcaggtcgtataacgaatgtcaatagtttgactctcccagttctcaaattgcttcatcttagtgcccaatgggtttacctctacaaggtaa |
38931332 |
T |
|
| Q |
310 |
ctaaataagtgcatcattctgcaattctgtattgcagaagtcacgtgt--tacattgaactatatcatttaaatttaacttaactgatatttcgcttatg |
407 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38931331 |
ttaaataagtgcatcattctgcaattatgaattgcagaagtcacgtgtcagacactgaactatatcatttaaatttaacttaactgatatttcgcttatg |
38931232 |
T |
|
| Q |
408 |
tgcaggatggtatatttgtgccacattggaacatgaatgcgaacagcataatgtatgtaacaagaggaagagggagggttcaagtggtgaatagtgaggg |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38931231 |
tgcaggatggtatatttgtgccacattggaacatgaatgcgaacagcataatgtacgtaacaagaggaagagggagggttcaagtggtgaatagtgaggg |
38931132 |
T |
|
| Q |
508 |
aaaatcggtgttcaatggagaggtaaaaaggggaagattgttggtggt |
555 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38931131 |
aaaatcagtgttcaatggagaggtaaaaaggggaagattgttggtggt |
38931084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University