View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_high_80 (Length: 232)
Name: NF3107_high_80
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_high_80 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 23190486 - 23190717
Alignment:
| Q |
1 |
cactcattgaagcaagatgagttttagagtgacttcgctagttgtaagaatttaatagttacttgtttgggtaacattgaaaaaacttgtgtcaatgcta |
100 |
Q |
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| T |
23190486 |
cactcattgaagcaagatgagttttagagtgacttcgctagttgtaagaatttaatagttacttgtttgggtaacattgaaaaaacttgtgtcaatgcta |
23190585 |
T |
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| Q |
101 |
ctattatttctttcctttatctactccaatgttgttttagtaaaatctgtcaaagataatcattaggagaataaaatttgttagtagtttagaaaatttg |
200 |
Q |
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| T |
23190586 |
ctattatttctttcctttatctactccaatgttgttttagtaaaatctgtcaaggataatcattaggagaataaaatttgttagtagtttagaaaattag |
23190685 |
T |
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| Q |
201 |
ttaaactttaaattatatgctctataattaaa |
232 |
Q |
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| T |
23190686 |
ttaaactttaaattatatgctctataaataaa |
23190717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 23183113 - 23183344
Alignment:
| Q |
4 |
tcattgaagcaagatgagttttagagtgacttcg---ctagttgtaagaatttaatagttacttgtttgggtaacattgaaaaaacttgtgtcaatgcta |
100 |
Q |
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| T |
23183113 |
tcattgaagcaagatgagttttagagtgacgacgtcactatctgtaagaattgaatacttacttgtttgggtaacattgaacaaacttgtgtcaatgcta |
23183212 |
T |
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| Q |
101 |
ctattat---ttctttcctttatctactccaatgttgttttagtaaaatctgtcaaagataatcattaggagaataaaatttgttagtagtttagaaaat |
197 |
Q |
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| T |
23183213 |
ctattataatttctttcctttatctactccaatgttgttttagtaaaatctgtcaaggataatcattaggagaataaaattagatagtagtttagaaaat |
23183312 |
T |
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| Q |
198 |
ttgttaaactttaaattatatgctctataattaaa |
232 |
Q |
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| T |
23183313 |
tagttaaaatttaa---atatgctctataaataaa |
23183344 |
T |
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