View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3107_high_9 (Length: 546)
Name: NF3107_high_9
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 9 - 361
Target Start/End: Original strand, 33357391 - 33357755
Alignment:
| Q |
9 |
agcataggtagcatttcatttaattaaatcggtgggaggtttgatatcaatgttgattatagcatgggtttggattatagttgggagttaggtttattca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33357391 |
agcataggtagcatttcatttaattaaatcggtgggaggtttgatatcaatgttgattatagcatgggtttggattatagttgggagttaggtttattca |
33357490 |
T |
|
| Q |
109 |
tgtcattcttacctctcttattgcctacctggagcaactactctttattattg--tttgagttaaatatgttcatctccacgtaggcaaacttgggt--- |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33357491 |
tgtcattcttacctctcttattgcctacctggggcaactactctttattattgtttttgagttaaatatgttcatctccacgtaggcaaacttgggtaga |
33357590 |
T |
|
| Q |
204 |
-------agagttggacaaataaattaaggccaactcaactcacagtaaaaacatatttagcataaataagcaataggatgtgtgaggtgttactttggc |
296 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33357591 |
caatgcaagagttggacaaattaattaaggccaactcaactcacagtaaaaacatatttagcataaataagcaatagggtgtgtgaggtgttactttggc |
33357690 |
T |
|
| Q |
297 |
gttaaaaatttagcattttattttaagggacacagttgaaatgacatacaaattatcgtaaaatg |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
33357691 |
gttaaaaatttagcattttattttaagggacacagttcaaatggcatacaaattatcgtaaaatg |
33357755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 435 - 527
Target Start/End: Original strand, 33357870 - 33357962
Alignment:
| Q |
435 |
gtgaagtgtgggagaaacaattttcccatgagatacgtggtgtggattcgagtcgaactaaatcgagtatttatgttgcattttggttcagtc |
527 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33357870 |
gtgaagtgtgggacaaacaattttcccatgagatatgtggtgtggtttcgagtcgaactaaatcgaatatttatgttgcattttggttcagtc |
33357962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University