View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_high_90 (Length: 209)
Name: NF3107_high_90
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_high_90 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 31614424 - 31614249
Alignment:
| Q |
15 |
cacaacactgacataaacactagacacaacaatgaaattgacatatttatacataatactttgaaaaataaattaatcgaatataatcacatgtattact |
114 |
Q |
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| T |
31614424 |
cacaacactgacataaacactagacacaacaatgaaattgacatatttatacataatactttgaaaaataaattaatcgaatataatcacatgtgttact |
31614325 |
T |
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| Q |
115 |
atcatgtcagacacaactttcaataagaagtgtcagtgctacatagctcagtataagatttgaactataagtgatg |
190 |
Q |
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| T |
31614324 |
atcgtgtcagacataactttcaataagaagtgtcagtgctacatagcccagtataagatttgaactataagtgatg |
31614249 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 35871232 - 35871176
Alignment:
| Q |
67 |
ataatactttgaaaaataaattaatcgaatataatcacatgtattactatcatgtca |
123 |
Q |
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|||||| ||||||||||||| |||| |||| ||||||||||| || |||||||||| |
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| T |
35871232 |
ataataatttgaaaaataaagtaattgaatgtaatcacatgtgttggtatcatgtca |
35871176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 24445433 - 24445377
Alignment:
| Q |
67 |
ataatactttgaaaaataaattaatcgaatataatcacatgtattactatcatgtca |
123 |
Q |
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|||||| ||||||||||||| |||| |||| ||||||||||| || |||||||||| |
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| T |
24445433 |
ataataatttgaaaaataaagtaattgaatgtaatcacatgtgttggtatcatgtca |
24445377 |
T |
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