View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3107_low_100 (Length: 202)

Name: NF3107_low_100
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3107_low_100
NF3107_low_100
[»] chr3 (20 HSPs)
chr3 (1-202)||(22630747-22630948)
chr3 (1-199)||(22468256-22468454)
chr3 (1-161)||(22368220-22368380)
chr3 (32-199)||(22632204-22632371)
chr3 (1-195)||(22358310-22358504)
chr3 (2-199)||(22443048-22443245)
chr3 (2-199)||(22431461-22431657)
chr3 (1-195)||(22635811-22636005)
chr3 (1-122)||(22354119-22354242)
chr3 (2-194)||(21937118-21937310)
chr3 (2-197)||(22458798-22458993)
chr3 (2-197)||(22481779-22481974)
chr3 (2-196)||(22436943-22437137)
chr3 (53-156)||(21930424-21930527)
chr3 (53-156)||(22034520-22034623)
chr3 (53-156)||(22052736-22052839)
chr3 (55-134)||(22615621-22615700)
chr3 (53-194)||(22027965-22028106)
chr3 (53-194)||(22186953-22187094)
chr3 (53-101)||(21945682-21945730)
[»] chr4 (1 HSPs)
chr4 (109-199)||(29610973-29611062)
[»] chr8 (1 HSPs)
chr8 (53-101)||(27294606-27294654)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 22630747 - 22630948
Alignment:
Q  1 cgagacaccgtgatccatacatgagaattaaagtgtttaacgacctttgggttgtcaaaaactttcttggctaaagtggttttccccagtcctcccattc 100  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||||| |||||||||||| ||||||||| | ||||||||||||||||||||||||||    
T  22630747 cgagacaccgtgatccattcatgacaatcaaagtgtttaacgacctttcggttgtcaaaaattttcttggcaagagtggttttccccagtcctcccattc 22630846  T
Q  101 caacaatagagacaactgtgcgttctgctcttccctctatcagccaatcaatcaatttgtcgcgtggctcgtcaaagcccacaacatcagcttcatccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22630847 caacaatagagacaactgtgcgttctgctcttccctctatcagccaatcaatcaatttgtctcgtggctcgtcaaagcccacaacatcagcttcatccaa 22630946  T
Q  201 at 202  Q
    ||    
T  22630947 at 22630948  T

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Target: chr3; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 22468256 - 22468454
Alignment:
Q  1 cgagacaccgtgatccatacatgagaattaaagtgtttaacgacctttgggttgtcaaaaactttcttggctaaagtggttttccccagtcctcccattc 100  Q
    |||||||||||||||||||||||| ||| ||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  22468256 cgagacaccgtgatccatacatgacaatcaaaatgtttaacgaccttttggttgtcaaaaactttcttggctatagtggtttttcccagtcctcccattc 22468355  T
Q  101 caacaatagagacaactgtgcgttctgctcttccctctatcagccaatcaatcaatttgtcgcgtggctcgtcaaagcccacaacatcagcttcatcca 199  Q
    |||| || |||||||| ||||| |||||||||||||||| || | |||||||||||||||| |||||||| ||||| ||||||| ||||||||||||||    
T  22468356 caactatggagacaacggtgcgctctgctcttccctctaccaacaaatcaatcaatttgtctcgtggctcttcaaatcccacaagatcagcttcatcca 22468454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 22368220 - 22368380
Alignment:
Q  1 cgagacaccgtgatccatacatgagaattaaagtgtttaacgacctttgggttgtcaaaaactttcttggctaaagtggttttccccagtcctcccattc 100  Q
    ||||| ||||||||||||| | || ||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  22368220 cgagaaaccgtgatccataaacgacaatcaaagtgtttaacgaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtcctcccattc 22368319  T
Q  101 caacaatagagacaactgtgcgttctgctcttccctctatcagccaatcaatcaatttgtc 161  Q
    ||||||| |||||||||||||| | |||||||||||||| || | ||||||||||||||||    
T  22368320 caacaatggagacaactgtgcggtgtgctcttccctctaccaacaaatcaatcaatttgtc 22368380  T

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Target: chr3; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 32 - 199
Target Start/End: Original strand, 22632204 - 22632371
Alignment:
Q  32 agtgtttaacgacctttgggttgtcaaaaactttcttggctaaagtggttttccccagtcctcccattccaacaatagagacaactgtgcgttctgctct 131  Q
    |||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||    
T  22632204 agtgtttaacgatctttcggttgtcaaaaactttcttggctagagtggttttccccagtcctcccattccaataatggagacaactgtgcgatctgctct 22632303  T
Q  132 tccctctatcagccaatcaatcaatttgtcgcgtggctcgtcaaagcccacaacatcagcttcatcca 199  Q
    |||||||| |||||||| ||| | ||| ||   |||||| ||||| ||||||||||||||||||||||    
T  22632304 tccctctaccagccaattaattagtttctctattggctcttcaaatcccacaacatcagcttcatcca 22632371  T

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Target: chr3; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 22358310 - 22358504
Alignment:
Q  1 cgagacaccgtgatccatacatgagaattaaagtgtttaacgacctttgggttgtcaaaaactttcttggctaaagtggttttccccagtcctcccattc 100  Q
    ||||||||||| ||||||||| ||  || ||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||    
T  22358310 cgagacaccgtaatccatacacgacgatcaaagtgttttacgacctttgggttgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattc 22358409  T
Q  101 caacaatagagacaactgtgcgttctgctcttccctctatcagccaatcaatcaatttgtcgcgtggctcgtcaaagcccacaacatcagcttca 195  Q
    ||||||| ||||||| ||| || |||||||||||  ||| ||   |||||||||||||||| | || ||  ||||| || |||||||||||||||    
T  22358410 caacaatggagacaattgtccggtctgctcttcctgctaccaaaaaatcaatcaatttgtctcttgtcttatcaaatcctacaacatcagcttca 22358504  T

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Target: chr3; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 2 - 199
Target Start/End: Original strand, 22443048 - 22443245
Alignment:
Q  2 gagacaccgtgatccatacatgagaattaaagtgtttaacgacctttgggttgtcaaaaactttcttggctaaagtggttttccccagtcctcccattcc 101  Q
    |||||||| ||||||||| | || | | |||||| ||||| |||||| |||||||||||| ||   |||||| ||||||||| |||| ||||||||||||    
T  22443048 gagacaccatgatccataaaagacagtcaaagtgcttaactaccttttggttgtcaaaaatttgtctggctagagtggtttttcccaatcctcccattcc 22443147  T
Q  102 aacaatagagacaactgtgcgttctgctcttccctctatcagccaatcaatcaatttgtcgcgtggctcgtcaaagcccacaacatcagcttcatcca 199  Q
    |||||| |||||||||||||| ||| |||||||||||| || | |||||||||||||||| | |||||| |||||||| |||| ||||||||||||||    
T  22443148 aacaatggagacaactgtgcggtcttctcttccctctaccaacaaatcaatcaatttgtctcttggctcttcaaagccaacaatatcagcttcatcca 22443245  T

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Target: chr3; HSP #7
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 2 - 199
Target Start/End: Original strand, 22431461 - 22431657
Alignment:
Q  2 gagacaccgtgatccatacatgagaattaaagtgtttaacgacctttgggttgtcaaaaactttcttggctaaagtggttttccccagtcctcccattcc 101  Q
    ||||||| |||||||||| | || ||| ||||||||||| |||| |   |||||||||||||||||||| || ||||||||| |||||||||||||||||    
T  22431461 gagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcctcccattcc 22431560  T
Q  102 aacaatagagacaactgtgcgttctgctcttccctctatcagccaatcaatcaatttgtcgcgtggctcgtcaaagcccacaacatcagcttcatcca 199  Q
     ||||| ||||| |||||| | ||| || |||| | || |||||||||||||||| |||| | |||||| ||||| ||||||||||||||||||||||    
T  22431561 -acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcagcttcatcca 22431657  T

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Target: chr3; HSP #8
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 22635811 - 22636005
Alignment:
Q  1 cgagacaccgtgatccatacatgagaattaaagtgtttaacgacctttgggttgtcaaaaactttcttggctaaagtggttttccccagtcctcccattc 100  Q
    ||||||||||| ||||||||| || ||| ||||| ||| ||||||||||||||||||||||||||||| |||| ||||||||| ||  ||||||||||||    
T  22635811 cgagacaccgtaatccatacacgacaatcaaagtattttacgacctttgggttgtcaaaaactttcttcgctagagtggtttttccttgtcctcccattc 22635910  T
Q  101 caacaatagagacaactgtgcgttctgctcttccctctatcagccaatcaatcaatttgtcgcgtggctcgtcaaagcccacaacatcagcttca 195  Q
    |||  || ||||||| ||| || |||||||||||| ||| ||    ||||||||||| ||| | |||||  ||||| || |||||||||||||||    
T  22635911 caaagatggagacaattgtccggtctgctcttcccgctaccaaaagatcaatcaattcgtctcttggcttatcaaatcctacaacatcagcttca 22636005  T

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Target: chr3; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 22354119 - 22354242
Alignment:
Q  1 cgagacaccgtgatccata--catgagaattaaagtgtttaacgacctttgggttgtcaaaaactttcttggctaaagtggttttccccagtcctcccat 98  Q
    ||||| |||||||||||||  ||| | ||| |||||  ||||| |||||| ||||||||||||||||  |||||| ||||||||| ||||||||||||||    
T  22354119 cgagataccgtgatccatatacataacaatcaaagttcttaactaccttttggttgtcaaaaacttttctggctagagtggtttttcccagtcctcccat 22354218  T
Q  99 tccaacaatagagacaactgtgcg 122  Q
    ||||||||| ||||||||||||||    
T  22354219 tccaacaatggagacaactgtgcg 22354242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 2 - 194
Target Start/End: Complemental strand, 21937310 - 21937118
Alignment:
Q  2 gagacaccgtgatccatacatgagaattaaagtgtttaacgacctttgggttgtcaaaaactttcttggctaaagtggttttccccagtcctcccattcc 101  Q
    ||||||| |||||||||||| || ||| |||||||  |||||| |    | |||||||| ||||||| |||| ||||||||| ||  | |||||||||||    
T  21937310 gagacactgtgatccatacacgacaatcaaagtgtccaacgacatccttgctgtcaaaagctttcttagctagagtggtttttccttgccctcccattcc 21937211  T
Q  102 aacaatagagacaactgtgcgttctgctcttccctctatcagccaatcaatcaatttgtcgcgtggctcgtcaaagcccacaacatcagcttc 194  Q
     || | ||| ||||| ||||| ||||| ||||||| ||||| ||||||||||||  |||| | | | | ||||||||||||||| ||||||||    
T  21937210 taccacagaaacaacagtgcgctctgcccttccctttatcatccaatcaatcaaaatgtccctttgtttgtcaaagcccacaacgtcagcttc 21937118  T

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Target: chr3; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 197
Target Start/End: Original strand, 22458798 - 22458993
Alignment:
Q  2 gagacaccgtgatccatacatgagaattaaagtgtttaacgacctttgggttgtcaaaaactttcttggctaaagtggttttccccagtcctcccattcc 101  Q
    |||||||  |||||||||||||| ||| |||||||||||||| |||   || ||||||||| ||||| || | ||| ||||| ||  |||||||| ||||    
T  22458798 gagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttgtcgtcaaaaaccttctttgcaagagttgtttttccttgtcctccctttcc 22458897  T
Q  102 aacaatagagacaactgtgcgttctgctcttccctctatcagccaatcaatcaatttgtcgcgtggctcgtcaaagcccacaacatcagcttcatc 197  Q
    |||||| | ||||| |||| |  || ||||  ||||||||| ||||||||| | | |||| | |||  | |||||||| ||||||||| |||||||    
T  22458898 aacaatggtgacaattgtgtgcacttctctctcctctatcaaccaatcaattagtatgtctcttggaacttcaaagcctacaacatcatcttcatc 22458993  T

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Target: chr3; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 197
Target Start/End: Original strand, 22481779 - 22481974
Alignment:
Q  2 gagacaccgtgatccatacatgagaattaaagtgtttaacgacctttgggttgtcaaaaactttcttggctaaagtggttttccccagtcctcccattcc 101  Q
    |||||||  |||||||||||||| ||| |||||||||||||| |||   || ||||||||| ||||| || | ||| ||||| ||  |||||||| ||||    
T  22481779 gagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttgtcgtcaaaaaccttctttgcaagagttgtttttccttgtcctccctttcc 22481878  T
Q  102 aacaatagagacaactgtgcgttctgctcttccctctatcagccaatcaatcaatttgtcgcgtggctcgtcaaagcccacaacatcagcttcatc 197  Q
    |||||| | ||||| |||| |  || ||||  ||||||||| ||||||||| | | |||| | |||  | |||||||| ||||||||| |||||||    
T  22481879 aacaatggtgacaattgtgtgcacttctctctcctctatcaaccaatcaattagtatgtctcttggaacttcaaagcctacaacatcatcttcatc 22481974  T

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Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 22436943 - 22437137
Alignment:
Q  2 gagacaccgtgatccatacatgagaattaaagtgtttaacgacctttgggttgtcaaaaactttcttggctaaagtggttttccccagtcctcccattcc 101  Q
    ||||||| ||||||||||||||| | | ||| ||||| | ||| ||   ||| ||||||||||||||||| | ||| ||||| ||  | |||||||||||    
T  22436943 gagacactgtgatccatacatgacagtcaaattgttttaagactttgatgttctcaaaaactttcttggccagagtagtttttccttgccctcccattcc 22437042  T
Q  102 aacaatagagacaactgtgcgttctgctcttccctctatcagccaatcaatcaatttgtcgcgt-ggctcgtcaaagcccacaacatcagcttcat 196  Q
     ||||||||||||||||  || ||| ||||||||   | |||||||| || |||| || ||  | ||||| ||||||||||| |||||||||||||    
T  22437043 tacaatagagacaactgcacgctctactcttcccctcaccagccaattaaacaatatg-cgtttgggctcttcaaagcccacgacatcagcttcat 22437137  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 156
Target Start/End: Complemental strand, 21930527 - 21930424
Alignment:
Q  53 tgtcaaaaactttcttggctaaagtggttttccccagtcctcccattccaacaatagagacaactgtgcgttctgctcttccctctatcagccaatcaat 152  Q
    ||||||||||||||||||||| ||| ||||| ||  | ||||||||||| || | ||| || || ||||| ||| | ||||||| || || |||||||||    
T  21930527 tgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctcttcccttccctgtaccatccaatcaat 21930428  T
Q  153 caat 156  Q
    ||||    
T  21930427 caat 21930424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 156
Target Start/End: Complemental strand, 22034623 - 22034520
Alignment:
Q  53 tgtcaaaaactttcttggctaaagtggttttccccagtcctcccattccaacaatagagacaactgtgcgttctgctcttccctctatcagccaatcaat 152  Q
    ||||||||||||||||||||| ||| ||||| ||  | ||||||||||| || | ||| || || ||||| ||| | ||||||| || || |||||||||    
T  22034623 tgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctcttcccttccctgtaccatccaatcaat 22034524  T
Q  153 caat 156  Q
    ||||    
T  22034523 caat 22034520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 156
Target Start/End: Complemental strand, 22052839 - 22052736
Alignment:
Q  53 tgtcaaaaactttcttggctaaagtggttttccccagtcctcccattccaacaatagagacaactgtgcgttctgctcttccctctatcagccaatcaat 152  Q
    ||||||||||||||||||||| ||| ||||| ||  | ||||||||||| || | ||| || || ||||| ||| | ||||||| || || |||||||||    
T  22052839 tgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccagagaaaccacagtgcgctcttcccttccctttaccatccaatcaat 22052740  T
Q  153 caat 156  Q
    ||||    
T  22052739 caat 22052736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 22615621 - 22615700
Alignment:
Q  55 tcaaaaactttcttggctaaagtggttttccccagtcctcccattccaacaatagagacaactgtgcgttctgctcttcc 134  Q
    |||||||| |||||||| | ||||||||| ||| | ||||||||||| || | ||||||||| ||||| ||| |||||||    
T  22615621 tcaaaaacattcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttcc 22615700  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 194
Target Start/End: Complemental strand, 22028106 - 22027965
Alignment:
Q  53 tgtcaaaaactttcttggctaaagtggttttccccagtcctcccattccaacaatagagacaactgtgcgttctgctcttccctctatcagccaatcaat 152  Q
    ||||||||||||||||||||| ||| ||||| ||  | ||||||||||| || | ||| || || ||||| ||| | ||||||| || || ||||||| |    
T  22028106 tgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctcttcccttccctgtaccaaccaatcagt 22028007  T
Q  153 caatttgtcgcgtggctcgtcaaagcccacaacatcagcttc 194  Q
    |||| | |  | |||| | ||||| |||||||| ||||||||    
T  22028006 caatctttttcttggcgcttcaaatcccacaacctcagcttc 22027965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 194
Target Start/End: Complemental strand, 22187094 - 22186953
Alignment:
Q  53 tgtcaaaaactttcttggctaaagtggttttccccagtcctcccattccaacaatagagacaactgtgcgttctgctcttccctctatcagccaatcaat 152  Q
    ||||||||||||||||||||| ||| ||||| ||  | ||||||||||| || | ||| | ||| ||||| ||| | ||||||| || || ||| |||||    
T  22187094 tgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagaaagaacagtgcgctcttcccttccctttaccatccactcaat 22186995  T
Q  153 caatttgtcgcgtggctcgtcaaagcccacaacatcagcttc 194  Q
    |||| | |  | |||| | ||||| |||||||| ||||||||    
T  22186994 caatctttttcttggcgcttcaaatcccacaacctcagcttc 22186953  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 21945730 - 21945682
Alignment:
Q  53 tgtcaaaaactttcttggctaaagtggttttccccagtcctcccattcc 101  Q
    ||||||||||||||||||||| ||||||||| ||  | |||||||||||    
T  21945730 tgtcaaaaactttcttggctagagtggtttttccttgccctcccattcc 21945682  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 29610973 - 29611062
Alignment:
Q  109 gagacaactgtgcgttctgctcttccctctatcagccaatcaatcaatttgtcgcgtggctcgtcaaagcccacaacatcagcttcatcca 199  Q
    ||||| |||||||| ||||||||||||| || |||||||||||| ||| | || | |||||| ||||||||  |||| |||||||||||||    
T  29610973 gagacgactgtgcgctctgctcttccct-taccagccaatcaattaatatttctcttggctcttcaaagcctgcaacgtcagcttcatcca 29611062  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 27294654 - 27294606
Alignment:
Q  53 tgtcaaaaactttcttggctaaagtggttttccccagtcctcccattcc 101  Q
    ||||||||||||||||| ||| ||||||||| ||  |||||||||||||    
T  27294654 tgtcaaaaactttcttgactagagtggtttttccttgtcctcccattcc 27294606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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