View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_low_101 (Length: 201)
Name: NF3107_low_101
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_101 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 41624395 - 41624226
Alignment:
| Q |
20 |
aagaccattagcaaagtaatgagctaaacgttggagtccatcgccgaaaggcgaagagtgttgcctaatctgtttgagtagctcatctgtattcctttga |
119 |
Q |
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| T |
41624395 |
aagaccattagcaaagtaatgagctaaacgttggagtccatcgccgaaaggcgaagagtgttgcctaatctgtttgagtagctcatctgtattcctttga |
41624296 |
T |
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| Q |
120 |
tcgtagctcgccacagcttgtgcacattgattaagcatggtccacaaatccacagccgcgatattcttcg |
189 |
Q |
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| T |
41624295 |
tcgtagctcgccacagcttgtgcacattgattaagcatggtccacaaatccacagccgcgacatttttcg |
41624226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 41627356 - 41627197
Alignment:
| Q |
20 |
aagaccattagcaaagtaatgagctaaacgttggagtccatcgccgaaaggcgaagagtgttgcctaatctgtttgagtagctcatctgtattcctttga |
119 |
Q |
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| T |
41627356 |
aagaccattagcaaagtaatgagctaaacgttggagtccatcgccgaaaggcgaagagtgatgcctaatctgtttgagtagctcatctgtattcctttga |
41627257 |
T |
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| Q |
120 |
tcgtagctcgccacagcttgtgcacattgattaagcatggtccacaaatccacagccgcg |
179 |
Q |
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| T |
41627256 |
tcgtagctcgccacagcttgtgcacattgatttagcatggtccacaaatccacagccgcg |
41627197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 41621049 - 41620896
Alignment:
| Q |
20 |
aagaccattagcaaagtaatgagctaaacgttggagtccatcgccgaaaggcgaagagtgttgcctaatctgtttgagtagctcatctgtattcctttga |
119 |
Q |
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| T |
41621049 |
aagaccattagcaaagtaatgagctaaccgctgaagtccatccccaaaaggcgaagagtgtttcctaatctgcttgagtagctcatttgtattcctttga |
41620950 |
T |
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| Q |
120 |
tcgtagctcgccacagcttgtgcacattgattaagcatggtccacaaatccaca |
173 |
Q |
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| T |
41620949 |
tcatagcttgccacggcctgtgcacattgagttagcatagtccacaaatccaca |
41620896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 23930220 - 23930095
Alignment:
| Q |
24 |
ccattagcaaagtaatgagctaaacgttggagtccatcgccgaaaggcgaagagtgttgcctaatctgtttgagtagctcatctgtattcctttgatcgt |
123 |
Q |
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|||| ||||||||||||||||||||| || ||||||||||| |||||||| || ||||||||||| || |||| |||| || |||||||||||| | |
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| T |
23930220 |
ccatcagcaaagtaatgagctaaacgctgaagtccatcgccacttggcgaagaatgctgcctaatctgcttcagtatatcatttgcattcctttgatcat |
23930121 |
T |
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| Q |
124 |
agctcgccacagcttgtgcacattga |
149 |
Q |
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|||| | |||||||||||||||||| |
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| T |
23930120 |
agctaccaacagcttgtgcacattga |
23930095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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