View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_low_13 (Length: 541)
Name: NF3107_low_13
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 11 - 521
Target Start/End: Original strand, 54266362 - 54266873
Alignment:
| Q |
11 |
cagagaataaa-ctgattaagcttacaaataaaaaggcatataaaacagattcagaaacttattgacagctacatcacagaattttgaagagaagacaag |
109 |
Q |
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| T |
54266362 |
cagagaataaaactgattaagcttacaaataaaaaggcatataaaacagattcagaaacttattgacagctacatcacagaattttgaagagaagacaag |
54266461 |
T |
|
| Q |
110 |
agagaaagaatttaacatagagccgattttacagacggccacaaacaaccatctttcagccggctatcacaattctgccagcacaaatttttctaacccc |
209 |
Q |
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| T |
54266462 |
agagaaagaatttaacatagagccgattttacagacggccacaaacaaccatctttcagccggctatcacaattctgccagcacaaatttttctaacccc |
54266561 |
T |
|
| Q |
210 |
attccttagcccatccctttaaattcttcttcacccaaacactatactataattcataaacattatttannnnnnnnnnnnnacctttcaaattaatgca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
54266562 |
attccttagcccatccctttaaattcttcttcacccaaacactatactataattcataaacattttttttatttttatttttacctttcaaattaatgca |
54266661 |
T |
|
| Q |
310 |
ccattaatactatatataaatatacatctttgctagcttgtttcttcattatacacttcttttttattccaatggcgaaaaaatcgcagaagcaaataga |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
54266662 |
ccattaatactatatataaatatacatctttgctagcttgtttcttcagtatacacttctttttttttccaatggcgaaaaaatcgcagaagcaaataga |
54266761 |
T |
|
| Q |
410 |
gaaagacgacaatgcaagcaatgataatgataatctgaatccaagtaacactgtcaccaccaaagcaaaacggacgaggaaaagtgtccctagaacttct |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54266762 |
gaaagacgacaatgcaagcaatgataatgataatctgaatccaagtaacactgtcaccaccaaagcaaaacggacgaggaaaagtgtccctagaacttct |
54266861 |
T |
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| Q |
510 |
ccacctcaacgc |
521 |
Q |
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| T |
54266862 |
ccacctcaacgc |
54266873 |
T |
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