View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_low_14 (Length: 538)
Name: NF3107_low_14
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_14 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 23 - 538
Target Start/End: Original strand, 28283632 - 28284139
Alignment:
| Q |
23 |
aagaaataggtggatgaattgcaagactactctaagaagtattgagtgtattgagtgtcaccgtacccatatgcatagagaaggaaatgttgttgtagac |
122 |
Q |
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| T |
28283632 |
aagaaataggtggatgaattgcaagactactctaagaagtattgagtgg-----gtg-----gtacccatatacatagagaaggaaatgttgttgtagat |
28283721 |
T |
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| Q |
123 |
gctttagctaataatggccaaagcttaatgatattagctaataatgttgttggagaaacacaagaagaaaatgttgttggagatgattctacagattcac |
222 |
Q |
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| T |
28283722 |
gctttagctaataatggccaaagcttaatgatattagctaataatgttgttggagaaacacaagaagaaaatgttgttggagatgattctacagattcac |
28283821 |
T |
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| Q |
223 |
cactcactaaaatgcggggtgcacgacaaaactcttcaagccacattaattagacttttggaggaggaaggagccatttagatccttgaatcattccaag |
322 |
Q |
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| T |
28283822 |
cactcactaaaatgcggggtgcacgacaaaactcttcaagccacattaattagacttttggaggaggaaggagccatttagatccttgaatcattccaag |
28283921 |
T |
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| Q |
323 |
cgtaatgaaaggtttaacctctgctgcacttagttgttttccgacagttgcacgtcctttgggatctgactttggtcctgtgttctgatattctccaaag |
422 |
Q |
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| T |
28283922 |
cgtaatgaaaggtttaacctctgctgcacttagttgttttccgacagttgcacgtcctttgggatctgactttggtcctgtgttctgatattctccaaag |
28284021 |
T |
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| Q |
423 |
tatgaagttctgtgaatagcataatgtattaatgttaaaaatatatttaacctaaaatgatatatat--acactaacatattctaatggatgaatatata |
520 |
Q |
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| T |
28284022 |
tatgaagttctgtgaataacataatgtattaatgttaaaaatatatttaacctaaaatgatatatatacacactaacatattctaatggatgaatatata |
28284121 |
T |
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| Q |
521 |
tcattaaaatgcagaact |
538 |
Q |
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| T |
28284122 |
tcataaaaatgcagaact |
28284139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 217 - 455
Target Start/End: Original strand, 31113912 - 31114154
Alignment:
| Q |
217 |
attcaccactcactaaaatgcggggtgcacgacaaaactcttcaagccacat----taattagacttttggaggaggaaggagccatttagatccttgaa |
312 |
Q |
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| T |
31113912 |
attcaccactcactaaaatgtggggtgcaaggcaaaactcttgaagccacatacattaattagacttttggaggaggaaggagccattttgatccttgaa |
31114011 |
T |
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| Q |
313 |
tcattccaagcgtaatgaaaggtttaacctctgctgcacttagttgttttccgacagttgcacgtcctttgggatctgactttggtcctgtgttctgata |
412 |
Q |
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| T |
31114012 |
tcattccaagtgtaatgaaaggtttaacctctgcttcacttagttgctttgtgatacttacacgccctttcggatctgattttggtcctgtgttttgata |
31114111 |
T |
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| Q |
413 |
ttctccaaagtatgaagttctgtgaatagcataatgtattaat |
455 |
Q |
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| T |
31114112 |
ttctccaaagtatgatgttctgcagataagataatgtattaat |
31114154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 133; Significance: 7e-69; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 265 - 437
Target Start/End: Complemental strand, 174488 - 174316
Alignment:
| Q |
265 |
acattaattagacttttggaggaggaaggagccatttagatccttgaatcattccaagcgtaatgaaaggtttaacctctgctgcacttagttgttttcc |
364 |
Q |
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| T |
174488 |
acattaattagacttttggaggaggaaggagccatttagatgcttgaatcattccaagtgtaatgaaaggtttaacctctgcttcagttagttgctttgc |
174389 |
T |
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| Q |
365 |
gacagttgcacgtcctttgggatctgactttggtcctgtgttctgatattctccaaagtatgaagttctgtga |
437 |
Q |
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| T |
174388 |
aacacttgcacgccctttaggatctgactttggtcctgtgttctgatattctccaaagtatgaagttctgtga |
174316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 265 - 437
Target Start/End: Complemental strand, 180001 - 179829
Alignment:
| Q |
265 |
acattaattagacttttggaggaggaaggagccatttagatccttgaatcattccaagcgtaatgaaaggtttaacctctgctgcacttagttgttttcc |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || ||||||| ||| | |
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| T |
180001 |
acattaattagacttttggaggaggaaggagccatttagatgcttgaatcattccaagtgtaatgaaaggtttaacctctgcttcagttagttgctttgc |
179902 |
T |
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| Q |
365 |
gacagttgcacgtcctttgggatctgactttggtcctgtgttctgatattctccaaagtatgaagttctgtga |
437 |
Q |
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||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
179901 |
aacacttgcacgccctttaggatctgactttggtcctgtgttctgatattctccaaagtatgaagttctgtga |
179829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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