View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_low_18 (Length: 451)
Name: NF3107_low_18
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 17 - 440
Target Start/End: Complemental strand, 53432128 - 53431709
Alignment:
| Q |
17 |
acaattttatagcgctagctcactctaagatgttccattcttatcattttattttgaaaagtgtcaactattttttatgcttagtaattgttgtacttta |
116 |
Q |
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| T |
53432128 |
acaattttatagcgctcgctcactctaagatgttccattcttatctttttattttgaaaagtgtcaactattttttatgcttagtaattgttgtacttta |
53432029 |
T |
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| Q |
117 |
gggtcaagccataaattattccccactttcaaaatacgccaaatatccattgataaccggagagtctgccnnnnnnnctaccgctgacttagttgaagca |
216 |
Q |
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| T |
53432028 |
gggtcaagccataaattattccccactttcaaaatacgccaaatatccattgataaccggagagtctgccaaaaaaactaccgctgacttagttgaagca |
53431929 |
T |
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| Q |
217 |
aggtatatatatggtgaatgaaaatcctataattaaccacaatgttttaaagttagacaaactaacatttatttttgaaatgcaggcaatgtcacccaaa |
316 |
Q |
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| T |
53431928 |
aggtatatatatggtcaatgaaaatcctataa----ccacaatgttttaaagttagacaaactaacatttatttttgaaatgcaggcaatgtcacccaaa |
53431833 |
T |
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| Q |
317 |
ttcattaaataagaaaaaagtcaaaggaaagattgtcatttgtgatggaataagtgatgatgattactcaaccaataacaaaattaaaacggtgcaaggg |
416 |
Q |
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| T |
53431832 |
ttcattaaataagaaaaaagtcaaaggaaagattgtcatttgtgatggaataagtgatgatgattactcaaccaataacaaaattaaaacggtgcaaggg |
53431733 |
T |
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| Q |
417 |
atgggtggattaggtcttgttcat |
440 |
Q |
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| T |
53431732 |
atgggtggattaggtcttgttcat |
53431709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 306 - 440
Target Start/End: Complemental strand, 53424691 - 53424560
Alignment:
| Q |
306 |
tgtcacccaaattcattaaataagaaaaaagtcaaaggaaagattgtcatttgtgatggaataagtgatgatgattactcaaccaataacaaaattaaaa |
405 |
Q |
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| T |
53424691 |
tgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcata---gatgatggttacacaatctatgacaagattaaaa |
53424595 |
T |
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| Q |
406 |
cggtgcaagggatgggtggattaggtcttgttcat |
440 |
Q |
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| T |
53424594 |
tggcgcaagagatgggtggattaggtcttgttcat |
53424560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 259 - 440
Target Start/End: Original strand, 48373828 - 48374005
Alignment:
| Q |
259 |
tgttttaaagttagacaaactaacatttatttttgaaatgcaggcaatgtcacccaaattcattaaataagaaaaaagtcaaaggaaagattgtcatttg |
358 |
Q |
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| T |
48373828 |
tgttttaaagttaggcaaactaacattc-tttatgaagtgcagtcagtgtcatccaagttcattagataagaaaaaagttgaaggaaatattgtcatctg |
48373926 |
T |
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| Q |
359 |
tgatggaataagtgatgatgattactcaaccaataacaaaattaaaacggtgcaagggatgggtggattaggtcttgttcat |
440 |
Q |
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| T |
48373927 |
cgatggggta---gatggtgattattcaaccgatgaaaaaattaggacggtgcaagaggcgggtggattaggtcttgttcat |
48374005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 48373636 - 48373716
Alignment:
| Q |
105 |
tgttgtactttagggtcaagccataaattattccccactttcaaaatacgccaaatatccattgataaccggagagtctgc |
185 |
Q |
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| T |
48373636 |
tgttgtactttagggtcaagccataaatttctcccctctttcaaaatctgccgattatccattgataactggaaagtctgc |
48373716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 363
Target Start/End: Complemental strand, 26096594 - 26096526
Alignment:
| Q |
295 |
aatgcaggcaatgtcacccaaattcattaaataagaaaaaagtcaaaggaaagattgtcatttgtgatg |
363 |
Q |
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| T |
26096594 |
aatgtaggcaatgttctccaagttcattagacaagaaaaaagtcaaaggaaagattgtcatatgtgatg |
26096526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 53319837 - 53319799
Alignment:
| Q |
312 |
ccaaattcattaaataagaaaaaagtcaaaggaaagatt |
350 |
Q |
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| T |
53319837 |
ccaaattcactagataagaaaaaagtcaaaggaaagatt |
53319799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 26096809 - 26096724
Alignment:
| Q |
101 |
taattgttgtactttagggtcaagccataaattattccccactttcaaaatacgccaaatatccattgataaccggagagtctgcc |
186 |
Q |
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|||||||| |||| ||||||||||||||||| | || || |||||||||| | || |||||||||||||| ||||| |||||| |
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| T |
26096809 |
taattgttttactatagggtcaagccataaacttctctcctctttcaaaatcacctaattatccattgataactggagaatctgcc |
26096724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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