View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_low_19 (Length: 424)
Name: NF3107_low_19
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 10495100 - 10495226
Alignment:
| Q |
168 |
cccttcatagaatcttacattgagaatcggtaagtatttactaactcagtttccaattcctattactcctaattcctactcaaggctcgggttcgg-taa |
266 |
Q |
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| T |
10495100 |
cccttcatagaattttacattgagaatcggtaagtatttactaactcaatttccaattcctattactcctaattcctactcaaggctcgggttcggttaa |
10495199 |
T |
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| Q |
267 |
agtaagattcaccaatatctcttattt |
293 |
Q |
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| T |
10495200 |
agtaagattcaccaatatctcttattt |
10495226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 292 - 402
Target Start/End: Original strand, 10495313 - 10495423
Alignment:
| Q |
292 |
ttgtggaaatacaattttataatcaataaccaatgcaatttataaagtaatttgaattagagtactcctaacactttaaattcaattccttatggttaaa |
391 |
Q |
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| T |
10495313 |
ttgtagaaatacaattttataatcaataaccaatgcaatttataaagtaatttgaattagagtactcctaacactttaaattcaattccttatggtcaaa |
10495412 |
T |
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| Q |
392 |
cttaaaagcat |
402 |
Q |
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| T |
10495413 |
cttaaaagcat |
10495423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 10494912 - 10494955
Alignment:
| Q |
2 |
tatcaacatcaccatggaaaccatcacaaagcaccgcaaaccaa |
45 |
Q |
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| T |
10494912 |
tatcaacaccaccatgaaaaccatcacaaagcaccgcaaaccaa |
10494955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 199 - 283
Target Start/End: Complemental strand, 29822616 - 29822531
Alignment:
| Q |
199 |
aagtatttactaactcagtttccaattcctattactcctaattcctactcaaggctcgggttcgg-taaagtaagattcaccaata |
283 |
Q |
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| T |
29822616 |
aagtatttactaactcagttttgaattcctattaatcctaaatcctactcaagactcgggtttggttaaagtaagattcaccaata |
29822531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 29822430 - 29822366
Alignment:
| Q |
292 |
ttgtggaaatacaattttataatcaataaccaatgcaatttataaagtaatttgaattagagtact |
357 |
Q |
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| T |
29822430 |
ttgtagaaattcaattttataatcaatcaccaatgcaattta-gaagtaatttgaattagagtact |
29822366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 35966638 - 35966589
Alignment:
| Q |
202 |
tatttactaactcagtttccaattcctattactcctaattcctactcaag |
251 |
Q |
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| T |
35966638 |
tatttactaacttactttccaattcctctaacttctaattcctactcaag |
35966589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 14950384 - 14950328
Alignment:
| Q |
2 |
tatcaacatcaccatggaaaccatcacaaagcaccgcaaaccaa-acaacgaaaaat |
57 |
Q |
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| T |
14950384 |
tatcaacatcaccatggaaaccaccacgaaccaccacaaaccaacacaacaaaaaat |
14950328 |
T |
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