View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_low_2 (Length: 821)
Name: NF3107_low_2
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 203 - 605
Target Start/End: Complemental strand, 21127759 - 21127355
Alignment:
| Q |
203 |
tgatatatatttttcgtgtgaattggataacctttgcgtgcaatgcaagagtattcccttgatcctcgtcgtaagaccgcaactcatagctggattcgaa |
302 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21127759 |
tgatatatatttttcgtgtgaattggataacctttgcatgcaattcaagagtattcccttgatcctcgtcgtaagaccgcaactcatagctggattcgaa |
21127660 |
T |
|
| Q |
303 |
cttagaacctttagttaagctggaagatccttaccatctcacctaagtgttcttgagcgagcggagagaataatcgatttaacttacactacaataaccc |
402 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21127659 |
cttagaacctttagttaagctgaaagatccttaccatctcacctaagtgttcttgagcgagcggagagaataatcgatttaacttacactacaataaccc |
21127560 |
T |
|
| Q |
403 |
tatactcttaatatgacattaaatattagggttaatagtgtttta--cctgtaatatagatcatttctgctttttccctgtaatagtgttttatccctgt |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||| |||||||||||||| |||||| |
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| T |
21127559 |
tatactcttaatatgacattaaatattagggttaatagtgttttacccctgtaatattagtcatttctggtttttcccagtaatagtgttttaaccctgt |
21127460 |
T |
|
| Q |
501 |
attataagggtgaaaaatgtaatttactttccgtcgaaattcctccccttgtttaaccaaacgcaaagcattttaaaatctctcccccctatatctcttc |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
21127459 |
attataagggtgaaaaatgtaatttactttccgtcgaaattcctccccttgtctaaccaaacacaaagcattttaaaatctctcccctctatatctcttc |
21127360 |
T |
|
| Q |
601 |
cccca |
605 |
Q |
| |
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||||| |
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| T |
21127359 |
cccca |
21127355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 21127982 - 21127803
Alignment:
| Q |
25 |
ccaaatgagatccttatgagtcacctattcatcttgaacaacctgagtcaacacatgataaattcctttgactgagtacccatcatcgggataaaggttc |
124 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
21127982 |
ccaaatgagatccttatgagtcgcctattcatcttgaacaacctgagtcaaca-atgataaattcctttgactgagtacccatcattaggataaatgttc |
21127884 |
T |
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| Q |
125 |
tagtcccatttgtcttaagcactatcctgcaaaacattgttatccggcatagaactacattcttccaccaatccctcctga |
205 |
Q |
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| | |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21127883 |
caataccatttgtcttaagagctatcctgcaaaaaattgttatccggcatagaactacattcttccaccaatccctcctga |
21127803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 674 - 808
Target Start/End: Complemental strand, 21127294 - 21127161
Alignment:
| Q |
674 |
agtttaattattttatttcaattgaatttgaatgtaaagagctaattaagtttnnnnnnncagaagaaaactaaccagggtccccaacgttcaggtgggg |
773 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
21127294 |
agtttaattattttatttcaattgaacttgaatgtaaagagctaattaagtttaaaaaa-cagaagaaaactaaccatggtccccaacgttcaggtgggg |
21127196 |
T |
|
| Q |
774 |
tgcaaatagaaggaggcaatcgtgctttcatctca |
808 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
21127195 |
tgcaaatagaaggaggcaatcgtgctttcatctca |
21127161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 429 - 484
Target Start/End: Complemental strand, 42149109 - 42149054
Alignment:
| Q |
429 |
tagggttaatagtgttttacctgtaatatagatcatttctgctttttccctgtaat |
484 |
Q |
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|||||||||||||| ||||||| ||||||| ||||||||| |||||||||||||| |
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| T |
42149109 |
tagggttaatagtgctttacctccaatataggtcatttctggtttttccctgtaat |
42149054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 429 - 483
Target Start/End: Complemental strand, 35359700 - 35359644
Alignment:
| Q |
429 |
tagggttaatagtgttttacc--tgtaatatagatcatttctgctttttccctgtaa |
483 |
Q |
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|||||||||| |||||||||| |||||||||| |||||| || ||||||||||||| |
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| T |
35359700 |
tagggttaatggtgttttacccctgtaatataggtcatttttggtttttccctgtaa |
35359644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 430 - 474
Target Start/End: Complemental strand, 30872767 - 30872723
Alignment:
| Q |
430 |
agggttaatagtgttttacctgtaatatagatcatttctgctttt |
474 |
Q |
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| T |
30872767 |
agggttaatagtgttttacccgtaatataggtcatttccgctttt |
30872723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 448 - 483
Target Start/End: Complemental strand, 27987563 - 27987528
Alignment:
| Q |
448 |
cctgtaatatagatcatttctgctttttccctgtaa |
483 |
Q |
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|||||||||||||||||||||| ||||||||||||| |
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| T |
27987563 |
cctgtaatatagatcatttctggtttttccctgtaa |
27987528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 448 - 483
Target Start/End: Complemental strand, 28044865 - 28044830
Alignment:
| Q |
448 |
cctgtaatatagatcatttctgctttttccctgtaa |
483 |
Q |
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|||||||||||||||||||||| ||||||||||||| |
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| T |
28044865 |
cctgtaatatagatcatttctggtttttccctgtaa |
28044830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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