View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_low_20 (Length: 417)
Name: NF3107_low_20
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 17 - 406
Target Start/End: Complemental strand, 25601740 - 25601351
Alignment:
| Q |
17 |
catgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcatgctcgttctcagagtgtattgctttatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25601740 |
catgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcatgctcgttctcagagtgtattgctttatt |
25601641 |
T |
|
| Q |
117 |
caaaaaatttataaaatcagacatgtcccttgtttcgactttgttaagcactgaatcagaacaaaaacaatgtaattatattgtgcaataggattgatta |
216 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25601640 |
caaattttttataaaatcagacatgtcccttgtttcgactttgttaagcactgaatcagaacaaaaacaatgtaattatattgtgcaataagattgatta |
25601541 |
T |
|
| Q |
217 |
tagagcaagattccaatcctaattaaaatctagaatgtatttttaagtatgaagtagaataataattaaaaatttaggggtaaaggaaataattggaatg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25601540 |
tagagcaagattccaatcctaattaaaatctagaatgtatttttaagtatgaagtagaataataattaaaaatttaggggtaaaggaaataattggaatg |
25601441 |
T |
|
| Q |
317 |
tgaaataccttggcgcaccagtttcttagcacatagaacttacagtctagtttcttagcacaaccgcgacccaccagtttcgttcttctt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25601440 |
tgaaataccttggcgcaccagtttcttagcacatagaacttacagtctagtttcttagcacaaccgcgacacaccagtttcgttcttctt |
25601351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 22 - 303
Target Start/End: Complemental strand, 25596930 - 25596646
Alignment:
| Q |
22 |
ttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcatgctcgttctcagagtgtattgctttattcaaaa |
121 |
Q |
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|||||||| ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||| ||| || ||| ||||||||||||| | || |
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| T |
25596930 |
ttggtattcaaaaatgacaaaatgtgaagaagaacattgtcgggtaaatcgctcaatctgtcttcattctcattttcacagtgtattgctttctccattt |
25596831 |
T |
|
| Q |
122 |
aatttataaaatcagacatgtcccttgtttcgactttgttaagcactgaatcagaacaaaaacaatgtaattatattgtgcaataggattgattatagag |
221 |
Q |
| |
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|| || ||||||| || ||| |||||||| ||||||||| ||| |||| | || ||||||||| ||||||||| ||||||| || ||||| || |
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| T |
25596830 |
ttttaatgaaatcaggcacgtcacttgtttccactttgttaggcattgaaactgataaaaaacaattgaattatattatgcaata--at---ttataaag |
25596736 |
T |
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| Q |
222 |
caagattccaatcctaattaa--------aatctagaatgtatttttaagtatgaagtagaataataattaaaaatttaggggtaaagga |
303 |
Q |
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||| |||| ||||||||||| ||||| ||||||||||| ||||||||||||| ||||||||||||||| || ||| |||||| |
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| T |
25596735 |
caatcttccgatcctaattaaaatctgttaatcttgaatgtattttgaagtatgaagtaggataataattaaaaatataaggggaaagga |
25596646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 55967098 - 55967153
Alignment:
| Q |
32 |
aaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttca |
87 |
Q |
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||||||| ||||| ||||||||||||| ||||||||| ||||| ||||||||||| |
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| T |
55967098 |
aaaatgataaaatgtgaaggagaacactgtcgggtaagtcactttatctgtcttca |
55967153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 36636999 - 36637069
Alignment:
| Q |
17 |
catgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttca |
87 |
Q |
| |
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||||||||||||| ||||||||||||| ||||||| | || ||||||||| ||||||| ||||||||| |
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| T |
36636999 |
catgtttggtattcaaaaatgacaaaatgtgaaggattataccgtcgggtaagtcactcagcctgtcttca |
36637069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 17667160 - 17667196
Alignment:
| Q |
32 |
aaaatgacaaaatatgaaggagaacacagtcgggtaa |
68 |
Q |
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||||||||||||||||||||| ||||| ||||||||| |
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| T |
17667160 |
aaaatgacaaaatatgaaggataacactgtcgggtaa |
17667196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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